Experiment: Z3 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01446 and OHPLBJKB_01447 overlap by 4 nucleotides OHPLBJKB_01447 and OHPLBJKB_01448 are separated by 14 nucleotides OHPLBJKB_01448 and OHPLBJKB_01449 overlap by 1 nucleotides
OHPLBJKB_01446: OHPLBJKB_01446 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase, at 1,490,580 to 1,492,250
_01446
OHPLBJKB_01447: OHPLBJKB_01447 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,492,247 to 1,493,005
_01447
OHPLBJKB_01448: OHPLBJKB_01448 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,493,020 to 1,493,877
_01448
OHPLBJKB_01449: OHPLBJKB_01449 - o-succinylbenzoate synthase, at 1,493,877 to 1,494,839
_01449
Position (kb)
1492
1493
1494 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1491.556 kb on + strand, within OHPLBJKB_01446 at 1491.715 kb on - strand, within OHPLBJKB_01446 at 1491.760 kb on + strand, within OHPLBJKB_01446 at 1491.760 kb on + strand, within OHPLBJKB_01446 at 1491.760 kb on + strand, within OHPLBJKB_01446 at 1491.761 kb on - strand, within OHPLBJKB_01446 at 1491.808 kb on - strand, within OHPLBJKB_01446 at 1491.808 kb on - strand, within OHPLBJKB_01446 at 1491.970 kb on + strand, within OHPLBJKB_01446 at 1491.970 kb on + strand, within OHPLBJKB_01446 at 1491.970 kb on + strand, within OHPLBJKB_01446 at 1491.970 kb on + strand, within OHPLBJKB_01446 at 1491.971 kb on - strand, within OHPLBJKB_01446 at 1491.971 kb on - strand, within OHPLBJKB_01446 at 1491.971 kb on - strand, within OHPLBJKB_01446 at 1492.044 kb on + strand, within OHPLBJKB_01446 at 1492.101 kb on + strand at 1492.102 kb on - strand at 1492.238 kb on - strand at 1492.238 kb on - strand at 1492.238 kb on - strand at 1492.246 kb on + strand at 1492.247 kb on - strand at 1492.247 kb on - strand at 1492.247 kb on - strand at 1492.247 kb on - strand at 1492.247 kb on - strand at 1492.247 kb on - strand at 1492.364 kb on + strand, within OHPLBJKB_01447 at 1492.376 kb on + strand, within OHPLBJKB_01447 at 1492.376 kb on + strand, within OHPLBJKB_01447 at 1492.377 kb on - strand, within OHPLBJKB_01447 at 1492.377 kb on - strand, within OHPLBJKB_01447 at 1492.377 kb on - strand, within OHPLBJKB_01447 at 1492.377 kb on - strand, within OHPLBJKB_01447 at 1492.446 kb on + strand, within OHPLBJKB_01447 at 1492.446 kb on + strand, within OHPLBJKB_01447 at 1492.447 kb on - strand, within OHPLBJKB_01447 at 1492.454 kb on - strand, within OHPLBJKB_01447 at 1492.466 kb on - strand, within OHPLBJKB_01447 at 1492.674 kb on + strand, within OHPLBJKB_01447 at 1492.675 kb on - strand, within OHPLBJKB_01447 at 1492.818 kb on + strand, within OHPLBJKB_01447 at 1492.819 kb on - strand, within OHPLBJKB_01447 at 1492.819 kb on - strand, within OHPLBJKB_01447 at 1492.819 kb on - strand, within OHPLBJKB_01447 at 1492.853 kb on + strand, within OHPLBJKB_01447 at 1492.857 kb on - strand, within OHPLBJKB_01447 at 1492.860 kb on + strand, within OHPLBJKB_01447 at 1492.860 kb on + strand, within OHPLBJKB_01447 at 1492.860 kb on + strand, within OHPLBJKB_01447 at 1492.860 kb on + strand, within OHPLBJKB_01447 at 1492.861 kb on - strand, within OHPLBJKB_01447 at 1492.861 kb on - strand, within OHPLBJKB_01447 at 1492.942 kb on + strand at 1492.971 kb on + strand at 1493.019 kb on + strand at 1493.048 kb on - strand at 1493.098 kb on + strand at 1493.213 kb on - strand, within OHPLBJKB_01448 at 1493.311 kb on - strand, within OHPLBJKB_01448 at 1493.327 kb on + strand, within OHPLBJKB_01448 at 1493.328 kb on - strand, within OHPLBJKB_01448 at 1493.367 kb on + strand, within OHPLBJKB_01448 at 1493.367 kb on + strand, within OHPLBJKB_01448 at 1493.463 kb on + strand, within OHPLBJKB_01448 at 1493.463 kb on + strand, within OHPLBJKB_01448 at 1493.464 kb on - strand, within OHPLBJKB_01448 at 1493.791 kb on + strand, within OHPLBJKB_01448 at 1493.792 kb on - strand at 1493.792 kb on - strand at 1493.792 kb on - strand at 1493.882 kb on + strand at 1493.893 kb on + strand at 1493.894 kb on - strand at 1493.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Z3 MOI1 remove 1,491,556 + OHPLBJKB_01446 0.58 +1.0 1,491,715 - OHPLBJKB_01446 0.68 -0.9 1,491,760 + OHPLBJKB_01446 0.71 -3.1 1,491,760 + OHPLBJKB_01446 0.71 +0.3 1,491,760 + OHPLBJKB_01446 0.71 -1.9 1,491,761 - OHPLBJKB_01446 0.71 +0.9 1,491,808 - OHPLBJKB_01446 0.73 -1.2 1,491,808 - OHPLBJKB_01446 0.73 -0.2 1,491,970 + OHPLBJKB_01446 0.83 +0.8 1,491,970 + OHPLBJKB_01446 0.83 +1.7 1,491,970 + OHPLBJKB_01446 0.83 +0.6 1,491,970 + OHPLBJKB_01446 0.83 -0.4 1,491,971 - OHPLBJKB_01446 0.83 +1.0 1,491,971 - OHPLBJKB_01446 0.83 -2.7 1,491,971 - OHPLBJKB_01446 0.83 +1.0 1,492,044 + OHPLBJKB_01446 0.88 -2.7 1,492,101 + -0.9 1,492,102 - +0.1 1,492,238 - -1.7 1,492,238 - +0.8 1,492,238 - +0.1 1,492,246 + +1.2 1,492,247 - -0.4 1,492,247 - -1.5 1,492,247 - +1.8 1,492,247 - -1.7 1,492,247 - -1.5 1,492,247 - -0.9 1,492,364 + OHPLBJKB_01447 0.15 -1.1 1,492,376 + OHPLBJKB_01447 0.17 -1.5 1,492,376 + OHPLBJKB_01447 0.17 +1.0 1,492,377 - OHPLBJKB_01447 0.17 +0.1 1,492,377 - OHPLBJKB_01447 0.17 +0.2 1,492,377 - OHPLBJKB_01447 0.17 -0.6 1,492,377 - OHPLBJKB_01447 0.17 -0.4 1,492,446 + OHPLBJKB_01447 0.26 +2.3 1,492,446 + OHPLBJKB_01447 0.26 +0.4 1,492,447 - OHPLBJKB_01447 0.26 -2.3 1,492,454 - OHPLBJKB_01447 0.27 -0.9 1,492,466 - OHPLBJKB_01447 0.29 -0.3 1,492,674 + OHPLBJKB_01447 0.56 -1.9 1,492,675 - OHPLBJKB_01447 0.56 -1.4 1,492,818 + OHPLBJKB_01447 0.75 +1.5 1,492,819 - OHPLBJKB_01447 0.75 +0.3 1,492,819 - OHPLBJKB_01447 0.75 +1.0 1,492,819 - OHPLBJKB_01447 0.75 -0.4 1,492,853 + OHPLBJKB_01447 0.80 -1.4 1,492,857 - OHPLBJKB_01447 0.80 -1.4 1,492,860 + OHPLBJKB_01447 0.81 +1.2 1,492,860 + OHPLBJKB_01447 0.81 +1.1 1,492,860 + OHPLBJKB_01447 0.81 -0.8 1,492,860 + OHPLBJKB_01447 0.81 -1.0 1,492,861 - OHPLBJKB_01447 0.81 +0.5 1,492,861 - OHPLBJKB_01447 0.81 -2.0 1,492,942 + +0.8 1,492,971 + +0.7 1,493,019 + -1.5 1,493,048 - +1.5 1,493,098 + +0.0 1,493,213 - OHPLBJKB_01448 0.22 +0.4 1,493,311 - OHPLBJKB_01448 0.34 -1.0 1,493,327 + OHPLBJKB_01448 0.36 +2.0 1,493,328 - OHPLBJKB_01448 0.36 -1.9 1,493,367 + OHPLBJKB_01448 0.40 -0.3 1,493,367 + OHPLBJKB_01448 0.40 -0.3 1,493,463 + OHPLBJKB_01448 0.52 -0.6 1,493,463 + OHPLBJKB_01448 0.52 -0.4 1,493,464 - OHPLBJKB_01448 0.52 +0.3 1,493,791 + OHPLBJKB_01448 0.90 +0.6 1,493,792 - +0.2 1,493,792 - -1.6 1,493,792 - -2.3 1,493,882 + +1.4 1,493,893 + +0.6 1,493,894 - -0.8 1,493,896 - -1.7
Or see this region's nucleotide sequence