Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01447

Experiment: Z3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01446 and OHPLBJKB_01447 overlap by 4 nucleotidesOHPLBJKB_01447 and OHPLBJKB_01448 are separated by 14 nucleotidesOHPLBJKB_01448 and OHPLBJKB_01449 overlap by 1 nucleotides OHPLBJKB_01446: OHPLBJKB_01446 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase, at 1,490,580 to 1,492,250 _01446 OHPLBJKB_01447: OHPLBJKB_01447 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,492,247 to 1,493,005 _01447 OHPLBJKB_01448: OHPLBJKB_01448 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,493,020 to 1,493,877 _01448 OHPLBJKB_01449: OHPLBJKB_01449 - o-succinylbenzoate synthase, at 1,493,877 to 1,494,839 _01449 Position (kb) 1492 1493 1494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1491.556 kb on + strand, within OHPLBJKB_01446at 1491.715 kb on - strand, within OHPLBJKB_01446at 1491.760 kb on + strand, within OHPLBJKB_01446at 1491.760 kb on + strand, within OHPLBJKB_01446at 1491.760 kb on + strand, within OHPLBJKB_01446at 1491.761 kb on - strand, within OHPLBJKB_01446at 1491.808 kb on - strand, within OHPLBJKB_01446at 1491.808 kb on - strand, within OHPLBJKB_01446at 1491.970 kb on + strand, within OHPLBJKB_01446at 1491.970 kb on + strand, within OHPLBJKB_01446at 1491.970 kb on + strand, within OHPLBJKB_01446at 1491.970 kb on + strand, within OHPLBJKB_01446at 1491.971 kb on - strand, within OHPLBJKB_01446at 1491.971 kb on - strand, within OHPLBJKB_01446at 1491.971 kb on - strand, within OHPLBJKB_01446at 1492.044 kb on + strand, within OHPLBJKB_01446at 1492.101 kb on + strandat 1492.102 kb on - strandat 1492.238 kb on - strandat 1492.238 kb on - strandat 1492.238 kb on - strandat 1492.246 kb on + strandat 1492.247 kb on - strandat 1492.247 kb on - strandat 1492.247 kb on - strandat 1492.247 kb on - strandat 1492.247 kb on - strandat 1492.247 kb on - strandat 1492.364 kb on + strand, within OHPLBJKB_01447at 1492.376 kb on + strand, within OHPLBJKB_01447at 1492.376 kb on + strand, within OHPLBJKB_01447at 1492.377 kb on - strand, within OHPLBJKB_01447at 1492.377 kb on - strand, within OHPLBJKB_01447at 1492.377 kb on - strand, within OHPLBJKB_01447at 1492.377 kb on - strand, within OHPLBJKB_01447at 1492.446 kb on + strand, within OHPLBJKB_01447at 1492.446 kb on + strand, within OHPLBJKB_01447at 1492.447 kb on - strand, within OHPLBJKB_01447at 1492.454 kb on - strand, within OHPLBJKB_01447at 1492.466 kb on - strand, within OHPLBJKB_01447at 1492.674 kb on + strand, within OHPLBJKB_01447at 1492.675 kb on - strand, within OHPLBJKB_01447at 1492.818 kb on + strand, within OHPLBJKB_01447at 1492.819 kb on - strand, within OHPLBJKB_01447at 1492.819 kb on - strand, within OHPLBJKB_01447at 1492.819 kb on - strand, within OHPLBJKB_01447at 1492.853 kb on + strand, within OHPLBJKB_01447at 1492.857 kb on - strand, within OHPLBJKB_01447at 1492.860 kb on + strand, within OHPLBJKB_01447at 1492.860 kb on + strand, within OHPLBJKB_01447at 1492.860 kb on + strand, within OHPLBJKB_01447at 1492.860 kb on + strand, within OHPLBJKB_01447at 1492.861 kb on - strand, within OHPLBJKB_01447at 1492.861 kb on - strand, within OHPLBJKB_01447at 1492.942 kb on + strandat 1492.971 kb on + strandat 1493.019 kb on + strandat 1493.048 kb on - strandat 1493.098 kb on + strandat 1493.213 kb on - strand, within OHPLBJKB_01448at 1493.311 kb on - strand, within OHPLBJKB_01448at 1493.327 kb on + strand, within OHPLBJKB_01448at 1493.328 kb on - strand, within OHPLBJKB_01448at 1493.367 kb on + strand, within OHPLBJKB_01448at 1493.367 kb on + strand, within OHPLBJKB_01448at 1493.463 kb on + strand, within OHPLBJKB_01448at 1493.463 kb on + strand, within OHPLBJKB_01448at 1493.464 kb on - strand, within OHPLBJKB_01448at 1493.791 kb on + strand, within OHPLBJKB_01448at 1493.792 kb on - strandat 1493.792 kb on - strandat 1493.792 kb on - strandat 1493.882 kb on + strandat 1493.893 kb on + strandat 1493.894 kb on - strandat 1493.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Z3 MOI1
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1,491,556 + OHPLBJKB_01446 0.58 +1.0
1,491,715 - OHPLBJKB_01446 0.68 -0.9
1,491,760 + OHPLBJKB_01446 0.71 -3.1
1,491,760 + OHPLBJKB_01446 0.71 +0.3
1,491,760 + OHPLBJKB_01446 0.71 -1.9
1,491,761 - OHPLBJKB_01446 0.71 +0.9
1,491,808 - OHPLBJKB_01446 0.73 -1.2
1,491,808 - OHPLBJKB_01446 0.73 -0.2
1,491,970 + OHPLBJKB_01446 0.83 +0.8
1,491,970 + OHPLBJKB_01446 0.83 +1.7
1,491,970 + OHPLBJKB_01446 0.83 +0.6
1,491,970 + OHPLBJKB_01446 0.83 -0.4
1,491,971 - OHPLBJKB_01446 0.83 +1.0
1,491,971 - OHPLBJKB_01446 0.83 -2.7
1,491,971 - OHPLBJKB_01446 0.83 +1.0
1,492,044 + OHPLBJKB_01446 0.88 -2.7
1,492,101 + -0.9
1,492,102 - +0.1
1,492,238 - -1.7
1,492,238 - +0.8
1,492,238 - +0.1
1,492,246 + +1.2
1,492,247 - -0.4
1,492,247 - -1.5
1,492,247 - +1.8
1,492,247 - -1.7
1,492,247 - -1.5
1,492,247 - -0.9
1,492,364 + OHPLBJKB_01447 0.15 -1.1
1,492,376 + OHPLBJKB_01447 0.17 -1.5
1,492,376 + OHPLBJKB_01447 0.17 +1.0
1,492,377 - OHPLBJKB_01447 0.17 +0.1
1,492,377 - OHPLBJKB_01447 0.17 +0.2
1,492,377 - OHPLBJKB_01447 0.17 -0.6
1,492,377 - OHPLBJKB_01447 0.17 -0.4
1,492,446 + OHPLBJKB_01447 0.26 +2.3
1,492,446 + OHPLBJKB_01447 0.26 +0.4
1,492,447 - OHPLBJKB_01447 0.26 -2.3
1,492,454 - OHPLBJKB_01447 0.27 -0.9
1,492,466 - OHPLBJKB_01447 0.29 -0.3
1,492,674 + OHPLBJKB_01447 0.56 -1.9
1,492,675 - OHPLBJKB_01447 0.56 -1.4
1,492,818 + OHPLBJKB_01447 0.75 +1.5
1,492,819 - OHPLBJKB_01447 0.75 +0.3
1,492,819 - OHPLBJKB_01447 0.75 +1.0
1,492,819 - OHPLBJKB_01447 0.75 -0.4
1,492,853 + OHPLBJKB_01447 0.80 -1.4
1,492,857 - OHPLBJKB_01447 0.80 -1.4
1,492,860 + OHPLBJKB_01447 0.81 +1.2
1,492,860 + OHPLBJKB_01447 0.81 +1.1
1,492,860 + OHPLBJKB_01447 0.81 -0.8
1,492,860 + OHPLBJKB_01447 0.81 -1.0
1,492,861 - OHPLBJKB_01447 0.81 +0.5
1,492,861 - OHPLBJKB_01447 0.81 -2.0
1,492,942 + +0.8
1,492,971 + +0.7
1,493,019 + -1.5
1,493,048 - +1.5
1,493,098 + +0.0
1,493,213 - OHPLBJKB_01448 0.22 +0.4
1,493,311 - OHPLBJKB_01448 0.34 -1.0
1,493,327 + OHPLBJKB_01448 0.36 +2.0
1,493,328 - OHPLBJKB_01448 0.36 -1.9
1,493,367 + OHPLBJKB_01448 0.40 -0.3
1,493,367 + OHPLBJKB_01448 0.40 -0.3
1,493,463 + OHPLBJKB_01448 0.52 -0.6
1,493,463 + OHPLBJKB_01448 0.52 -0.4
1,493,464 - OHPLBJKB_01448 0.52 +0.3
1,493,791 + OHPLBJKB_01448 0.90 +0.6
1,493,792 - +0.2
1,493,792 - -1.6
1,493,792 - -2.3
1,493,882 + +1.4
1,493,893 + +0.6
1,493,894 - -0.8
1,493,896 - -1.7

Or see this region's nucleotide sequence