Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01136

Experiment: Z3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01134 and OHPLBJKB_01135 are separated by 32 nucleotidesOHPLBJKB_01135 and OHPLBJKB_01136 overlap by 1 nucleotidesOHPLBJKB_01136 and OHPLBJKB_01137 overlap by 4 nucleotidesOHPLBJKB_01137 and OHPLBJKB_01138 are separated by 197 nucleotides OHPLBJKB_01134: OHPLBJKB_01134 - ECF RNA polymerase sigma-E factor, at 1,162,278 to 1,162,853 _01134 OHPLBJKB_01135: OHPLBJKB_01135 - Anti-sigma-E factor RseA, at 1,162,886 to 1,163,536 _01135 OHPLBJKB_01136: OHPLBJKB_01136 - Sigma-E factor regulatory protein RseB, at 1,163,536 to 1,164,492 _01136 OHPLBJKB_01137: OHPLBJKB_01137 - Protein RseC, at 1,164,489 to 1,164,968 _01137 OHPLBJKB_01138: OHPLBJKB_01138 - Elongation factor 4, at 1,165,166 to 1,166,965 _01138 Position (kb) 1163 1164 1165Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1162.823 kb on + strandat 1162.881 kb on + strandat 1162.882 kb on - strandat 1162.991 kb on + strand, within OHPLBJKB_01135at 1162.998 kb on + strand, within OHPLBJKB_01135at 1162.998 kb on + strand, within OHPLBJKB_01135at 1163.249 kb on - strand, within OHPLBJKB_01135at 1163.293 kb on + strand, within OHPLBJKB_01135at 1163.293 kb on + strand, within OHPLBJKB_01135at 1163.294 kb on - strand, within OHPLBJKB_01135at 1163.296 kb on + strand, within OHPLBJKB_01135at 1163.297 kb on - strand, within OHPLBJKB_01135at 1163.493 kb on + strandat 1163.494 kb on - strandat 1163.583 kb on - strandat 1163.628 kb on - strandat 1163.628 kb on - strandat 1163.810 kb on - strand, within OHPLBJKB_01136at 1163.851 kb on + strand, within OHPLBJKB_01136at 1163.851 kb on + strand, within OHPLBJKB_01136at 1163.852 kb on - strand, within OHPLBJKB_01136at 1163.852 kb on - strand, within OHPLBJKB_01136at 1163.877 kb on + strand, within OHPLBJKB_01136at 1163.877 kb on + strand, within OHPLBJKB_01136at 1163.881 kb on + strand, within OHPLBJKB_01136at 1163.881 kb on + strand, within OHPLBJKB_01136at 1163.882 kb on - strand, within OHPLBJKB_01136at 1163.882 kb on - strand, within OHPLBJKB_01136at 1163.882 kb on - strand, within OHPLBJKB_01136at 1163.883 kb on + strand, within OHPLBJKB_01136at 1163.908 kb on + strand, within OHPLBJKB_01136at 1163.909 kb on - strand, within OHPLBJKB_01136at 1163.909 kb on - strand, within OHPLBJKB_01136at 1163.911 kb on + strand, within OHPLBJKB_01136at 1163.911 kb on + strand, within OHPLBJKB_01136at 1163.912 kb on - strand, within OHPLBJKB_01136at 1163.989 kb on - strand, within OHPLBJKB_01136at 1163.995 kb on + strand, within OHPLBJKB_01136at 1163.996 kb on - strand, within OHPLBJKB_01136at 1164.001 kb on + strand, within OHPLBJKB_01136at 1164.001 kb on + strand, within OHPLBJKB_01136at 1164.002 kb on - strand, within OHPLBJKB_01136at 1164.002 kb on - strand, within OHPLBJKB_01136at 1164.002 kb on - strand, within OHPLBJKB_01136at 1164.126 kb on + strand, within OHPLBJKB_01136at 1164.296 kb on - strand, within OHPLBJKB_01136at 1164.390 kb on + strand, within OHPLBJKB_01136at 1164.390 kb on + strand, within OHPLBJKB_01136at 1164.399 kb on - strandat 1164.399 kb on - strandat 1164.399 kb on - strandat 1164.405 kb on + strandat 1164.471 kb on + strandat 1164.472 kb on - strandat 1164.472 kb on - strandat 1164.555 kb on - strand, within OHPLBJKB_01137at 1164.555 kb on - strand, within OHPLBJKB_01137at 1164.607 kb on + strand, within OHPLBJKB_01137at 1164.607 kb on + strand, within OHPLBJKB_01137at 1164.608 kb on - strand, within OHPLBJKB_01137at 1164.611 kb on + strand, within OHPLBJKB_01137at 1164.611 kb on + strand, within OHPLBJKB_01137at 1164.635 kb on + strand, within OHPLBJKB_01137at 1164.635 kb on + strand, within OHPLBJKB_01137at 1164.636 kb on - strand, within OHPLBJKB_01137at 1164.636 kb on - strand, within OHPLBJKB_01137at 1164.732 kb on + strand, within OHPLBJKB_01137at 1164.732 kb on + strand, within OHPLBJKB_01137at 1164.732 kb on + strand, within OHPLBJKB_01137at 1164.732 kb on + strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.733 kb on - strand, within OHPLBJKB_01137at 1164.734 kb on + strand, within OHPLBJKB_01137at 1164.735 kb on - strand, within OHPLBJKB_01137at 1164.735 kb on - strand, within OHPLBJKB_01137at 1164.735 kb on - strand, within OHPLBJKB_01137at 1164.735 kb on - strand, within OHPLBJKB_01137at 1164.735 kb on - strand, within OHPLBJKB_01137at 1164.735 kb on - strand, within OHPLBJKB_01137at 1164.772 kb on + strand, within OHPLBJKB_01137at 1164.808 kb on + strand, within OHPLBJKB_01137at 1164.809 kb on - strand, within OHPLBJKB_01137at 1164.809 kb on - strand, within OHPLBJKB_01137at 1164.809 kb on - strand, within OHPLBJKB_01137at 1164.809 kb on - strand, within OHPLBJKB_01137at 1164.809 kb on - strand, within OHPLBJKB_01137at 1164.809 kb on - strand, within OHPLBJKB_01137at 1164.866 kb on + strand, within OHPLBJKB_01137at 1164.867 kb on - strand, within OHPLBJKB_01137at 1164.904 kb on + strand, within OHPLBJKB_01137at 1164.904 kb on + strand, within OHPLBJKB_01137at 1164.904 kb on + strand, within OHPLBJKB_01137at 1164.995 kb on + strandat 1165.020 kb on + strandat 1165.065 kb on - strandat 1165.065 kb on - strandat 1165.065 kb on - strandat 1165.065 kb on - strandat 1165.069 kb on + strandat 1165.069 kb on + strandat 1165.088 kb on + strandat 1165.091 kb on + strandat 1165.122 kb on - strandat 1165.160 kb on + strandat 1165.165 kb on + strandat 1165.376 kb on + strand, within OHPLBJKB_01138

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Per-strain Table

Position Strand Gene LocusTag Fraction Z3 MOI1
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1,162,823 + +1.3
1,162,881 + +0.6
1,162,882 - +1.6
1,162,991 + OHPLBJKB_01135 0.16 +0.3
1,162,998 + OHPLBJKB_01135 0.17 +1.1
1,162,998 + OHPLBJKB_01135 0.17 +0.3
1,163,249 - OHPLBJKB_01135 0.56 +1.6
1,163,293 + OHPLBJKB_01135 0.63 +0.3
1,163,293 + OHPLBJKB_01135 0.63 +1.1
1,163,294 - OHPLBJKB_01135 0.63 +1.1
1,163,296 + OHPLBJKB_01135 0.63 -0.2
1,163,297 - OHPLBJKB_01135 0.63 -0.7
1,163,493 + -0.1
1,163,494 - +0.6
1,163,583 - +0.2
1,163,628 - -1.4
1,163,628 - +0.5
1,163,810 - OHPLBJKB_01136 0.29 -0.9
1,163,851 + OHPLBJKB_01136 0.33 -2.2
1,163,851 + OHPLBJKB_01136 0.33 -0.2
1,163,852 - OHPLBJKB_01136 0.33 -0.4
1,163,852 - OHPLBJKB_01136 0.33 +1.7
1,163,877 + OHPLBJKB_01136 0.36 -1.8
1,163,877 + OHPLBJKB_01136 0.36 -1.3
1,163,881 + OHPLBJKB_01136 0.36 +1.4
1,163,881 + OHPLBJKB_01136 0.36 +1.3
1,163,882 - OHPLBJKB_01136 0.36 -0.9
1,163,882 - OHPLBJKB_01136 0.36 -1.5
1,163,882 - OHPLBJKB_01136 0.36 +0.6
1,163,883 + OHPLBJKB_01136 0.36 +0.0
1,163,908 + OHPLBJKB_01136 0.39 -1.6
1,163,909 - OHPLBJKB_01136 0.39 -2.4
1,163,909 - OHPLBJKB_01136 0.39 -0.8
1,163,911 + OHPLBJKB_01136 0.39 +2.6
1,163,911 + OHPLBJKB_01136 0.39 +1.9
1,163,912 - OHPLBJKB_01136 0.39 +0.6
1,163,989 - OHPLBJKB_01136 0.47 -1.4
1,163,995 + OHPLBJKB_01136 0.48 +0.2
1,163,996 - OHPLBJKB_01136 0.48 -1.4
1,164,001 + OHPLBJKB_01136 0.49 +0.9
1,164,001 + OHPLBJKB_01136 0.49 +0.7
1,164,002 - OHPLBJKB_01136 0.49 +0.8
1,164,002 - OHPLBJKB_01136 0.49 -0.1
1,164,002 - OHPLBJKB_01136 0.49 +1.1
1,164,126 + OHPLBJKB_01136 0.62 -1.8
1,164,296 - OHPLBJKB_01136 0.79 +0.3
1,164,390 + OHPLBJKB_01136 0.89 -0.4
1,164,390 + OHPLBJKB_01136 0.89 +1.5
1,164,399 - -0.7
1,164,399 - -1.1
1,164,399 - -1.1
1,164,405 + +0.8
1,164,471 + -0.1
1,164,472 - +1.5
1,164,472 - -1.4
1,164,555 - OHPLBJKB_01137 0.14 -0.8
1,164,555 - OHPLBJKB_01137 0.14 -2.0
1,164,607 + OHPLBJKB_01137 0.25 +0.9
1,164,607 + OHPLBJKB_01137 0.25 -0.9
1,164,608 - OHPLBJKB_01137 0.25 -0.8
1,164,611 + OHPLBJKB_01137 0.25 +0.5
1,164,611 + OHPLBJKB_01137 0.25 -1.9
1,164,635 + OHPLBJKB_01137 0.30 -1.1
1,164,635 + OHPLBJKB_01137 0.30 -2.4
1,164,636 - OHPLBJKB_01137 0.31 -1.2
1,164,636 - OHPLBJKB_01137 0.31 +1.3
1,164,732 + OHPLBJKB_01137 0.51 -1.4
1,164,732 + OHPLBJKB_01137 0.51 -1.5
1,164,732 + OHPLBJKB_01137 0.51 +0.3
1,164,732 + OHPLBJKB_01137 0.51 +1.2
1,164,733 - OHPLBJKB_01137 0.51 +0.8
1,164,733 - OHPLBJKB_01137 0.51 -0.1
1,164,733 - OHPLBJKB_01137 0.51 -1.1
1,164,733 - OHPLBJKB_01137 0.51 -0.8
1,164,733 - OHPLBJKB_01137 0.51 -1.3
1,164,733 - OHPLBJKB_01137 0.51 -0.2
1,164,733 - OHPLBJKB_01137 0.51 -0.5
1,164,733 - OHPLBJKB_01137 0.51 -0.2
1,164,733 - OHPLBJKB_01137 0.51 -1.7
1,164,733 - OHPLBJKB_01137 0.51 +1.0
1,164,733 - OHPLBJKB_01137 0.51 -0.6
1,164,734 + OHPLBJKB_01137 0.51 +1.1
1,164,735 - OHPLBJKB_01137 0.51 -1.2
1,164,735 - OHPLBJKB_01137 0.51 -1.9
1,164,735 - OHPLBJKB_01137 0.51 +0.7
1,164,735 - OHPLBJKB_01137 0.51 -0.2
1,164,735 - OHPLBJKB_01137 0.51 +1.6
1,164,735 - OHPLBJKB_01137 0.51 -0.1
1,164,772 + OHPLBJKB_01137 0.59 +0.6
1,164,808 + OHPLBJKB_01137 0.66 -0.3
1,164,809 - OHPLBJKB_01137 0.67 -1.4
1,164,809 - OHPLBJKB_01137 0.67 -0.4
1,164,809 - OHPLBJKB_01137 0.67 -0.8
1,164,809 - OHPLBJKB_01137 0.67 -1.2
1,164,809 - OHPLBJKB_01137 0.67 +0.8
1,164,809 - OHPLBJKB_01137 0.67 -0.6
1,164,866 + OHPLBJKB_01137 0.79 +0.2
1,164,867 - OHPLBJKB_01137 0.79 +0.3
1,164,904 + OHPLBJKB_01137 0.86 -0.6
1,164,904 + OHPLBJKB_01137 0.86 -0.0
1,164,904 + OHPLBJKB_01137 0.86 -0.4
1,164,995 + +0.9
1,165,020 + -3.2
1,165,065 - +3.4
1,165,065 - -1.2
1,165,065 - +1.4
1,165,065 - -0.3
1,165,069 + -0.7
1,165,069 + -1.2
1,165,088 + -1.9
1,165,091 + +1.0
1,165,122 - -0.2
1,165,160 + +0.8
1,165,165 + +0.0
1,165,376 + OHPLBJKB_01138 0.12 +0.1

Or see this region's nucleotide sequence