Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00797

Experiment: Z3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00796 and OHPLBJKB_00797 are separated by 23 nucleotidesOHPLBJKB_00797 and OHPLBJKB_00798 are separated by 10 nucleotides OHPLBJKB_00796: OHPLBJKB_00796 - Propionyl-CoA:succinate CoA transferase, at 817,110 to 818,588 _00796 OHPLBJKB_00797: OHPLBJKB_00797 - Methylmalonyl-CoA decarboxylase, at 818,612 to 819,397 _00797 OHPLBJKB_00798: OHPLBJKB_00798 - GTPase ArgK, at 819,408 to 820,403 _00798 OHPLBJKB_00799: OHPLBJKB_00799 - Methylmalonyl-CoA mutase, at 820,396 to 822,540 _00799 Position (kb) 818 819 820Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 817.615 kb on + strand, within OHPLBJKB_00796at 817.615 kb on + strand, within OHPLBJKB_00796at 817.622 kb on + strand, within OHPLBJKB_00796at 817.623 kb on - strand, within OHPLBJKB_00796at 817.705 kb on - strand, within OHPLBJKB_00796at 817.725 kb on + strand, within OHPLBJKB_00796at 817.725 kb on + strand, within OHPLBJKB_00796at 817.726 kb on - strand, within OHPLBJKB_00796at 817.726 kb on - strand, within OHPLBJKB_00796at 817.739 kb on - strand, within OHPLBJKB_00796at 817.841 kb on + strand, within OHPLBJKB_00796at 817.926 kb on - strand, within OHPLBJKB_00796at 817.926 kb on - strand, within OHPLBJKB_00796at 817.990 kb on + strand, within OHPLBJKB_00796at 818.033 kb on + strand, within OHPLBJKB_00796at 818.099 kb on - strand, within OHPLBJKB_00796at 818.243 kb on - strand, within OHPLBJKB_00796at 818.243 kb on - strand, within OHPLBJKB_00796at 818.312 kb on + strand, within OHPLBJKB_00796at 818.313 kb on - strand, within OHPLBJKB_00796at 818.335 kb on + strand, within OHPLBJKB_00796at 818.336 kb on - strand, within OHPLBJKB_00796at 818.373 kb on + strand, within OHPLBJKB_00796at 818.374 kb on - strand, within OHPLBJKB_00796at 818.454 kb on - strandat 818.593 kb on - strandat 818.636 kb on - strandat 818.685 kb on + strandat 818.685 kb on + strandat 818.686 kb on - strandat 818.710 kb on + strand, within OHPLBJKB_00797at 818.710 kb on + strand, within OHPLBJKB_00797at 818.711 kb on - strand, within OHPLBJKB_00797at 818.711 kb on - strand, within OHPLBJKB_00797at 818.753 kb on + strand, within OHPLBJKB_00797at 818.754 kb on - strand, within OHPLBJKB_00797at 818.774 kb on - strand, within OHPLBJKB_00797at 818.822 kb on + strand, within OHPLBJKB_00797at 818.822 kb on + strand, within OHPLBJKB_00797at 818.823 kb on - strand, within OHPLBJKB_00797at 818.823 kb on - strand, within OHPLBJKB_00797at 818.823 kb on - strand, within OHPLBJKB_00797at 818.977 kb on + strand, within OHPLBJKB_00797at 818.978 kb on - strand, within OHPLBJKB_00797at 818.979 kb on + strand, within OHPLBJKB_00797at 818.980 kb on - strand, within OHPLBJKB_00797at 819.082 kb on + strand, within OHPLBJKB_00797at 819.083 kb on - strand, within OHPLBJKB_00797at 819.156 kb on + strand, within OHPLBJKB_00797at 819.156 kb on + strand, within OHPLBJKB_00797at 819.156 kb on + strand, within OHPLBJKB_00797at 819.156 kb on + strand, within OHPLBJKB_00797at 819.157 kb on - strand, within OHPLBJKB_00797at 819.157 kb on - strand, within OHPLBJKB_00797at 819.157 kb on - strand, within OHPLBJKB_00797at 819.157 kb on - strand, within OHPLBJKB_00797at 819.157 kb on - strand, within OHPLBJKB_00797at 819.157 kb on - strand, within OHPLBJKB_00797at 819.157 kb on - strand, within OHPLBJKB_00797at 819.247 kb on + strand, within OHPLBJKB_00797at 819.248 kb on - strand, within OHPLBJKB_00797at 819.248 kb on - strand, within OHPLBJKB_00797at 819.278 kb on + strand, within OHPLBJKB_00797at 819.289 kb on + strand, within OHPLBJKB_00797at 819.289 kb on + strand, within OHPLBJKB_00797at 819.289 kb on + strand, within OHPLBJKB_00797at 819.289 kb on + strand, within OHPLBJKB_00797at 819.290 kb on - strand, within OHPLBJKB_00797at 819.290 kb on - strand, within OHPLBJKB_00797at 819.310 kb on + strand, within OHPLBJKB_00797at 819.314 kb on + strand, within OHPLBJKB_00797at 819.315 kb on - strand, within OHPLBJKB_00797at 819.315 kb on - strand, within OHPLBJKB_00797at 819.322 kb on + strandat 819.336 kb on + strandat 819.337 kb on - strandat 819.508 kb on + strand, within OHPLBJKB_00798at 819.509 kb on - strand, within OHPLBJKB_00798at 819.546 kb on + strand, within OHPLBJKB_00798at 819.547 kb on - strand, within OHPLBJKB_00798at 819.547 kb on - strand, within OHPLBJKB_00798at 819.547 kb on - strand, within OHPLBJKB_00798at 819.690 kb on - strand, within OHPLBJKB_00798at 819.690 kb on - strand, within OHPLBJKB_00798at 819.690 kb on - strand, within OHPLBJKB_00798at 819.721 kb on + strand, within OHPLBJKB_00798at 819.722 kb on - strand, within OHPLBJKB_00798at 819.725 kb on + strand, within OHPLBJKB_00798at 819.725 kb on + strand, within OHPLBJKB_00798at 819.737 kb on + strand, within OHPLBJKB_00798at 819.754 kb on + strand, within OHPLBJKB_00798at 819.754 kb on + strand, within OHPLBJKB_00798at 819.754 kb on + strand, within OHPLBJKB_00798at 819.755 kb on - strand, within OHPLBJKB_00798at 819.755 kb on - strand, within OHPLBJKB_00798at 819.758 kb on + strand, within OHPLBJKB_00798at 819.758 kb on + strand, within OHPLBJKB_00798at 819.758 kb on + strand, within OHPLBJKB_00798at 819.758 kb on + strand, within OHPLBJKB_00798at 819.758 kb on + strand, within OHPLBJKB_00798at 819.758 kb on + strand, within OHPLBJKB_00798at 819.759 kb on - strand, within OHPLBJKB_00798at 819.759 kb on - strand, within OHPLBJKB_00798at 819.759 kb on - strand, within OHPLBJKB_00798at 819.759 kb on - strand, within OHPLBJKB_00798at 819.759 kb on - strand, within OHPLBJKB_00798at 819.759 kb on - strand, within OHPLBJKB_00798at 819.759 kb on - strand, within OHPLBJKB_00798at 819.783 kb on - strand, within OHPLBJKB_00798at 819.845 kb on + strand, within OHPLBJKB_00798at 819.890 kb on + strand, within OHPLBJKB_00798at 819.891 kb on - strand, within OHPLBJKB_00798at 819.891 kb on - strand, within OHPLBJKB_00798at 819.957 kb on + strand, within OHPLBJKB_00798at 819.957 kb on + strand, within OHPLBJKB_00798at 819.957 kb on + strand, within OHPLBJKB_00798at 819.958 kb on - strand, within OHPLBJKB_00798at 819.958 kb on - strand, within OHPLBJKB_00798at 819.958 kb on - strand, within OHPLBJKB_00798at 819.958 kb on - strand, within OHPLBJKB_00798at 819.964 kb on + strand, within OHPLBJKB_00798at 819.990 kb on + strand, within OHPLBJKB_00798at 819.990 kb on + strand, within OHPLBJKB_00798at 819.990 kb on + strand, within OHPLBJKB_00798at 819.991 kb on - strand, within OHPLBJKB_00798at 819.991 kb on - strand, within OHPLBJKB_00798at 820.262 kb on + strand, within OHPLBJKB_00798at 820.283 kb on + strand, within OHPLBJKB_00798at 820.283 kb on + strand, within OHPLBJKB_00798at 820.284 kb on - strand, within OHPLBJKB_00798at 820.284 kb on - strand, within OHPLBJKB_00798at 820.284 kb on - strand, within OHPLBJKB_00798at 820.284 kb on - strand, within OHPLBJKB_00798at 820.287 kb on + strand, within OHPLBJKB_00798at 820.287 kb on + strand, within OHPLBJKB_00798at 820.373 kb on + strandat 820.373 kb on + strandat 820.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Z3 MOI1
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817,615 + OHPLBJKB_00796 0.34 +0.8
817,615 + OHPLBJKB_00796 0.34 -0.2
817,622 + OHPLBJKB_00796 0.35 -1.8
817,623 - OHPLBJKB_00796 0.35 +0.7
817,705 - OHPLBJKB_00796 0.40 +0.1
817,725 + OHPLBJKB_00796 0.42 -0.0
817,725 + OHPLBJKB_00796 0.42 -1.3
817,726 - OHPLBJKB_00796 0.42 -1.4
817,726 - OHPLBJKB_00796 0.42 -2.0
817,739 - OHPLBJKB_00796 0.43 -0.9
817,841 + OHPLBJKB_00796 0.49 -0.1
817,926 - OHPLBJKB_00796 0.55 +1.2
817,926 - OHPLBJKB_00796 0.55 -0.6
817,990 + OHPLBJKB_00796 0.59 -1.3
818,033 + OHPLBJKB_00796 0.62 +0.5
818,099 - OHPLBJKB_00796 0.67 -0.2
818,243 - OHPLBJKB_00796 0.77 +2.1
818,243 - OHPLBJKB_00796 0.77 -0.8
818,312 + OHPLBJKB_00796 0.81 -1.8
818,313 - OHPLBJKB_00796 0.81 +0.6
818,335 + OHPLBJKB_00796 0.83 -0.4
818,336 - OHPLBJKB_00796 0.83 -0.6
818,373 + OHPLBJKB_00796 0.85 -1.5
818,374 - OHPLBJKB_00796 0.85 +1.8
818,454 - -0.6
818,593 - +0.9
818,636 - -0.5
818,685 + -0.7
818,685 + -1.0
818,686 - +1.1
818,710 + OHPLBJKB_00797 0.12 +1.4
818,710 + OHPLBJKB_00797 0.12 -0.2
818,711 - OHPLBJKB_00797 0.13 +0.1
818,711 - OHPLBJKB_00797 0.13 +0.6
818,753 + OHPLBJKB_00797 0.18 +1.0
818,754 - OHPLBJKB_00797 0.18 -0.1
818,774 - OHPLBJKB_00797 0.21 +1.1
818,822 + OHPLBJKB_00797 0.27 -0.7
818,822 + OHPLBJKB_00797 0.27 -2.2
818,823 - OHPLBJKB_00797 0.27 -2.0
818,823 - OHPLBJKB_00797 0.27 -0.8
818,823 - OHPLBJKB_00797 0.27 +0.2
818,977 + OHPLBJKB_00797 0.46 +0.4
818,978 - OHPLBJKB_00797 0.47 -0.5
818,979 + OHPLBJKB_00797 0.47 -0.9
818,980 - OHPLBJKB_00797 0.47 -0.2
819,082 + OHPLBJKB_00797 0.60 +0.4
819,083 - OHPLBJKB_00797 0.60 +1.5
819,156 + OHPLBJKB_00797 0.69 -2.5
819,156 + OHPLBJKB_00797 0.69 -1.6
819,156 + OHPLBJKB_00797 0.69 +0.4
819,156 + OHPLBJKB_00797 0.69 +0.0
819,157 - OHPLBJKB_00797 0.69 -1.4
819,157 - OHPLBJKB_00797 0.69 -1.0
819,157 - OHPLBJKB_00797 0.69 +0.5
819,157 - OHPLBJKB_00797 0.69 -2.3
819,157 - OHPLBJKB_00797 0.69 -1.5
819,157 - OHPLBJKB_00797 0.69 +0.1
819,157 - OHPLBJKB_00797 0.69 -1.8
819,247 + OHPLBJKB_00797 0.81 -0.4
819,248 - OHPLBJKB_00797 0.81 -0.8
819,248 - OHPLBJKB_00797 0.81 +0.4
819,278 + OHPLBJKB_00797 0.85 -1.6
819,289 + OHPLBJKB_00797 0.86 -1.0
819,289 + OHPLBJKB_00797 0.86 +0.3
819,289 + OHPLBJKB_00797 0.86 +0.6
819,289 + OHPLBJKB_00797 0.86 -0.8
819,290 - OHPLBJKB_00797 0.86 -0.0
819,290 - OHPLBJKB_00797 0.86 +0.3
819,310 + OHPLBJKB_00797 0.89 -2.7
819,314 + OHPLBJKB_00797 0.89 -0.6
819,315 - OHPLBJKB_00797 0.89 -0.7
819,315 - OHPLBJKB_00797 0.89 +0.2
819,322 + -0.4
819,336 + +1.2
819,337 - +2.1
819,508 + OHPLBJKB_00798 0.10 -0.3
819,509 - OHPLBJKB_00798 0.10 +0.8
819,546 + OHPLBJKB_00798 0.14 +0.3
819,547 - OHPLBJKB_00798 0.14 +2.4
819,547 - OHPLBJKB_00798 0.14 +1.3
819,547 - OHPLBJKB_00798 0.14 +0.4
819,690 - OHPLBJKB_00798 0.28 +0.4
819,690 - OHPLBJKB_00798 0.28 +2.8
819,690 - OHPLBJKB_00798 0.28 -0.7
819,721 + OHPLBJKB_00798 0.31 -1.8
819,722 - OHPLBJKB_00798 0.32 +0.4
819,725 + OHPLBJKB_00798 0.32 +0.6
819,725 + OHPLBJKB_00798 0.32 +1.5
819,737 + OHPLBJKB_00798 0.33 +1.2
819,754 + OHPLBJKB_00798 0.35 +1.0
819,754 + OHPLBJKB_00798 0.35 +0.1
819,754 + OHPLBJKB_00798 0.35 +0.3
819,755 - OHPLBJKB_00798 0.35 +0.9
819,755 - OHPLBJKB_00798 0.35 +0.7
819,758 + OHPLBJKB_00798 0.35 +2.2
819,758 + OHPLBJKB_00798 0.35 -0.6
819,758 + OHPLBJKB_00798 0.35 -1.7
819,758 + OHPLBJKB_00798 0.35 -2.2
819,758 + OHPLBJKB_00798 0.35 +1.1
819,758 + OHPLBJKB_00798 0.35 -2.2
819,759 - OHPLBJKB_00798 0.35 -0.2
819,759 - OHPLBJKB_00798 0.35 +2.4
819,759 - OHPLBJKB_00798 0.35 -0.8
819,759 - OHPLBJKB_00798 0.35 +1.0
819,759 - OHPLBJKB_00798 0.35 -0.2
819,759 - OHPLBJKB_00798 0.35 -2.3
819,759 - OHPLBJKB_00798 0.35 -1.4
819,783 - OHPLBJKB_00798 0.38 +0.2
819,845 + OHPLBJKB_00798 0.44 +1.0
819,890 + OHPLBJKB_00798 0.48 -2.1
819,891 - OHPLBJKB_00798 0.48 +0.5
819,891 - OHPLBJKB_00798 0.48 -1.0
819,957 + OHPLBJKB_00798 0.55 +0.8
819,957 + OHPLBJKB_00798 0.55 +0.2
819,957 + OHPLBJKB_00798 0.55 -2.6
819,958 - OHPLBJKB_00798 0.55 +0.8
819,958 - OHPLBJKB_00798 0.55 -2.6
819,958 - OHPLBJKB_00798 0.55 +5.7
819,958 - OHPLBJKB_00798 0.55 +1.5
819,964 + OHPLBJKB_00798 0.56 -2.0
819,990 + OHPLBJKB_00798 0.58 -1.3
819,990 + OHPLBJKB_00798 0.58 -0.3
819,990 + OHPLBJKB_00798 0.58 +1.4
819,991 - OHPLBJKB_00798 0.59 +0.6
819,991 - OHPLBJKB_00798 0.59 +2.2
820,262 + OHPLBJKB_00798 0.86 -1.1
820,283 + OHPLBJKB_00798 0.88 +0.1
820,283 + OHPLBJKB_00798 0.88 -0.0
820,284 - OHPLBJKB_00798 0.88 -2.0
820,284 - OHPLBJKB_00798 0.88 -2.4
820,284 - OHPLBJKB_00798 0.88 -0.5
820,284 - OHPLBJKB_00798 0.88 -0.4
820,287 + OHPLBJKB_00798 0.88 -0.2
820,287 + OHPLBJKB_00798 0.88 -1.2
820,373 + +2.6
820,373 + +0.6
820,374 - -0.0

Or see this region's nucleotide sequence