Experiment: Z3 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00755 and OHPLBJKB_00756 are separated by 160 nucleotides OHPLBJKB_00756 and OHPLBJKB_00757 overlap by 1 nucleotides OHPLBJKB_00757 and OHPLBJKB_00758 are separated by 183 nucleotides
OHPLBJKB_00755: OHPLBJKB_00755 - Adenine DNA glycosylase, at 777,918 to 778,970
_00755
OHPLBJKB_00756: OHPLBJKB_00756 - tRNA (guanine-N(7)-)-methyltransferase, at 779,131 to 779,850
_00756
OHPLBJKB_00757: OHPLBJKB_00757 - hypothetical protein, at 779,850 to 780,176
_00757
OHPLBJKB_00758: OHPLBJKB_00758 - hypothetical protein, at 780,360 to 781,079
_00758
Position (kb) 779
780
781 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 778.872 kb on + strand at 778.872 kb on + strand at 778.872 kb on + strand at 778.872 kb on + strand at 778.872 kb on + strand at 778.872 kb on + strand at 778.872 kb on + strand at 778.872 kb on + strand at 778.873 kb on - strand at 778.921 kb on + strand at 778.921 kb on + strand at 778.922 kb on - strand at 778.925 kb on + strand at 778.926 kb on - strand at 778.926 kb on - strand at 779.057 kb on - strand at 779.057 kb on - strand at 779.078 kb on + strand at 779.079 kb on - strand at 779.079 kb on - strand at 779.079 kb on - strand at 779.187 kb on + strand at 779.194 kb on - strand at 779.251 kb on + strand, within OHPLBJKB_00756 at 779.251 kb on + strand, within OHPLBJKB_00756 at 779.251 kb on + strand, within OHPLBJKB_00756 at 779.286 kb on + strand, within OHPLBJKB_00756 at 779.286 kb on + strand, within OHPLBJKB_00756 at 779.286 kb on + strand, within OHPLBJKB_00756 at 779.287 kb on - strand, within OHPLBJKB_00756 at 779.287 kb on - strand, within OHPLBJKB_00756 at 779.465 kb on + strand, within OHPLBJKB_00756 at 779.465 kb on + strand, within OHPLBJKB_00756 at 779.466 kb on - strand, within OHPLBJKB_00756 at 779.512 kb on - strand, within OHPLBJKB_00756 at 779.584 kb on - strand, within OHPLBJKB_00756 at 779.587 kb on - strand, within OHPLBJKB_00756 at 779.596 kb on - strand, within OHPLBJKB_00756 at 779.601 kb on - strand, within OHPLBJKB_00756 at 779.625 kb on - strand, within OHPLBJKB_00756 at 779.625 kb on - strand, within OHPLBJKB_00756 at 779.658 kb on + strand, within OHPLBJKB_00756 at 779.691 kb on + strand, within OHPLBJKB_00756 at 779.691 kb on + strand, within OHPLBJKB_00756 at 779.691 kb on + strand, within OHPLBJKB_00756 at 779.691 kb on + strand, within OHPLBJKB_00756 at 779.691 kb on + strand, within OHPLBJKB_00756 at 779.691 kb on + strand, within OHPLBJKB_00756 at 779.692 kb on - strand, within OHPLBJKB_00756 at 779.692 kb on - strand, within OHPLBJKB_00756 at 779.692 kb on - strand, within OHPLBJKB_00756 at 779.692 kb on - strand, within OHPLBJKB_00756 at 779.692 kb on - strand, within OHPLBJKB_00756 at 779.692 kb on - strand, within OHPLBJKB_00756 at 779.692 kb on - strand, within OHPLBJKB_00756 at 779.692 kb on - strand, within OHPLBJKB_00756 at 779.692 kb on - strand, within OHPLBJKB_00756 at 779.713 kb on - strand, within OHPLBJKB_00756 at 779.713 kb on - strand, within OHPLBJKB_00756 at 779.713 kb on - strand, within OHPLBJKB_00756 at 779.724 kb on + strand, within OHPLBJKB_00756 at 779.724 kb on + strand, within OHPLBJKB_00756 at 779.725 kb on - strand, within OHPLBJKB_00756 at 779.725 kb on - strand, within OHPLBJKB_00756 at 779.725 kb on - strand, within OHPLBJKB_00756 at 779.750 kb on - strand, within OHPLBJKB_00756 at 779.750 kb on - strand, within OHPLBJKB_00756 at 779.750 kb on - strand, within OHPLBJKB_00756 at 779.828 kb on + strand at 779.828 kb on + strand at 779.828 kb on + strand at 779.828 kb on + strand at 779.828 kb on + strand at 779.829 kb on - strand at 779.829 kb on - strand at 779.848 kb on + strand at 779.849 kb on - strand at 779.849 kb on - strand at 779.864 kb on + strand at 779.945 kb on + strand, within OHPLBJKB_00757 at 779.945 kb on + strand, within OHPLBJKB_00757 at 779.945 kb on + strand, within OHPLBJKB_00757 at 779.946 kb on - strand, within OHPLBJKB_00757 at 779.946 kb on - strand, within OHPLBJKB_00757 at 779.966 kb on + strand, within OHPLBJKB_00757 at 779.966 kb on + strand, within OHPLBJKB_00757 at 779.985 kb on - strand, within OHPLBJKB_00757 at 779.985 kb on - strand, within OHPLBJKB_00757 at 780.107 kb on + strand, within OHPLBJKB_00757 at 780.107 kb on + strand, within OHPLBJKB_00757 at 780.108 kb on - strand, within OHPLBJKB_00757 at 780.108 kb on - strand, within OHPLBJKB_00757 at 780.139 kb on + strand, within OHPLBJKB_00757 at 780.139 kb on + strand, within OHPLBJKB_00757 at 780.175 kb on - strand at 780.175 kb on - strand at 780.184 kb on + strand at 780.185 kb on - strand at 780.226 kb on + strand at 780.256 kb on - strand at 780.359 kb on + strand at 780.359 kb on + strand at 780.359 kb on + strand at 780.360 kb on - strand at 780.360 kb on - strand at 780.360 kb on - strand at 780.360 kb on - strand at 780.360 kb on - strand at 780.360 kb on - strand at 780.360 kb on - strand at 780.360 kb on - strand at 780.360 kb on - strand at 780.423 kb on + strand at 780.424 kb on - strand at 780.531 kb on + strand, within OHPLBJKB_00758 at 780.531 kb on + strand, within OHPLBJKB_00758 at 780.531 kb on + strand, within OHPLBJKB_00758 at 780.531 kb on + strand, within OHPLBJKB_00758 at 780.531 kb on + strand, within OHPLBJKB_00758 at 780.531 kb on + strand, within OHPLBJKB_00758 at 780.532 kb on - strand, within OHPLBJKB_00758 at 780.533 kb on + strand, within OHPLBJKB_00758 at 780.586 kb on - strand, within OHPLBJKB_00758 at 780.598 kb on + strand, within OHPLBJKB_00758 at 780.598 kb on + strand, within OHPLBJKB_00758 at 780.668 kb on + strand, within OHPLBJKB_00758 at 780.675 kb on - strand, within OHPLBJKB_00758 at 780.795 kb on + strand, within OHPLBJKB_00758 at 780.797 kb on + strand, within OHPLBJKB_00758 at 780.797 kb on + strand, within OHPLBJKB_00758 at 780.797 kb on + strand, within OHPLBJKB_00758 at 780.798 kb on - strand, within OHPLBJKB_00758 at 780.835 kb on + strand, within OHPLBJKB_00758 at 780.836 kb on - strand, within OHPLBJKB_00758 at 780.862 kb on + strand, within OHPLBJKB_00758 at 780.922 kb on + strand, within OHPLBJKB_00758 at 780.923 kb on - strand, within OHPLBJKB_00758 at 781.077 kb on + strand at 781.077 kb on + strand at 781.078 kb on - strand at 781.078 kb on - strand at 781.090 kb on + strand at 781.100 kb on + strand at 781.101 kb on - strand at 781.154 kb on + strand at 781.154 kb on + strand at 781.155 kb on - strand at 781.155 kb on - strand at 781.167 kb on + strand at 781.169 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Z3 MOI1 remove 778,872 + +0.2 778,872 + +0.2 778,872 + -0.1 778,872 + +0.5 778,872 + -1.4 778,872 + -0.1 778,872 + +0.5 778,872 + -3.0 778,873 - +0.8 778,921 + +2.2 778,921 + +0.6 778,922 - +2.6 778,925 + +0.5 778,926 - -3.3 778,926 - +1.7 779,057 - -0.2 779,057 - -0.2 779,078 + +1.0 779,079 - -1.5 779,079 - -0.4 779,079 - -1.7 779,187 + -2.6 779,194 - +1.6 779,251 + OHPLBJKB_00756 0.17 -1.5 779,251 + OHPLBJKB_00756 0.17 +2.5 779,251 + OHPLBJKB_00756 0.17 +0.5 779,286 + OHPLBJKB_00756 0.22 -0.7 779,286 + OHPLBJKB_00756 0.22 -1.4 779,286 + OHPLBJKB_00756 0.22 -2.4 779,287 - OHPLBJKB_00756 0.22 +1.7 779,287 - OHPLBJKB_00756 0.22 +0.8 779,465 + OHPLBJKB_00756 0.46 -0.8 779,465 + OHPLBJKB_00756 0.46 +1.6 779,466 - OHPLBJKB_00756 0.47 -0.7 779,512 - OHPLBJKB_00756 0.53 +1.3 779,584 - OHPLBJKB_00756 0.63 +0.1 779,587 - OHPLBJKB_00756 0.63 -1.9 779,596 - OHPLBJKB_00756 0.65 -0.0 779,601 - OHPLBJKB_00756 0.65 +0.2 779,625 - OHPLBJKB_00756 0.69 -2.2 779,625 - OHPLBJKB_00756 0.69 -0.8 779,658 + OHPLBJKB_00756 0.73 -1.7 779,691 + OHPLBJKB_00756 0.78 -1.1 779,691 + OHPLBJKB_00756 0.78 +1.9 779,691 + OHPLBJKB_00756 0.78 -1.3 779,691 + OHPLBJKB_00756 0.78 -1.2 779,691 + OHPLBJKB_00756 0.78 +2.3 779,691 + OHPLBJKB_00756 0.78 -2.0 779,692 - OHPLBJKB_00756 0.78 -1.0 779,692 - OHPLBJKB_00756 0.78 +0.8 779,692 - OHPLBJKB_00756 0.78 -0.2 779,692 - OHPLBJKB_00756 0.78 +0.3 779,692 - OHPLBJKB_00756 0.78 -0.0 779,692 - OHPLBJKB_00756 0.78 -1.0 779,692 - OHPLBJKB_00756 0.78 +0.5 779,692 - OHPLBJKB_00756 0.78 -0.4 779,692 - OHPLBJKB_00756 0.78 -1.0 779,713 - OHPLBJKB_00756 0.81 +0.9 779,713 - OHPLBJKB_00756 0.81 -2.2 779,713 - OHPLBJKB_00756 0.81 -0.1 779,724 + OHPLBJKB_00756 0.82 +4.3 779,724 + OHPLBJKB_00756 0.82 +2.3 779,725 - OHPLBJKB_00756 0.82 -0.6 779,725 - OHPLBJKB_00756 0.82 -1.3 779,725 - OHPLBJKB_00756 0.82 -0.2 779,750 - OHPLBJKB_00756 0.86 -1.6 779,750 - OHPLBJKB_00756 0.86 -0.8 779,750 - OHPLBJKB_00756 0.86 -0.4 779,828 + -0.0 779,828 + +0.2 779,828 + -1.9 779,828 + -0.0 779,828 + -1.7 779,829 - -1.0 779,829 - -0.8 779,848 + -2.8 779,849 - -0.3 779,849 - +0.9 779,864 + +0.1 779,945 + OHPLBJKB_00757 0.29 +0.2 779,945 + OHPLBJKB_00757 0.29 +0.2 779,945 + OHPLBJKB_00757 0.29 -2.1 779,946 - OHPLBJKB_00757 0.29 -2.0 779,946 - OHPLBJKB_00757 0.29 -2.0 779,966 + OHPLBJKB_00757 0.35 +1.2 779,966 + OHPLBJKB_00757 0.35 +0.2 779,985 - OHPLBJKB_00757 0.41 +0.5 779,985 - OHPLBJKB_00757 0.41 -0.1 780,107 + OHPLBJKB_00757 0.79 +1.8 780,107 + OHPLBJKB_00757 0.79 -0.3 780,108 - OHPLBJKB_00757 0.79 -1.5 780,108 - OHPLBJKB_00757 0.79 +1.6 780,139 + OHPLBJKB_00757 0.88 +1.8 780,139 + OHPLBJKB_00757 0.88 +1.0 780,175 - +0.4 780,175 - -1.0 780,184 + +0.1 780,185 - -2.2 780,226 + -0.9 780,256 - +3.1 780,359 + -2.5 780,359 + -1.0 780,359 + +0.4 780,360 - +0.2 780,360 - +0.4 780,360 - +0.5 780,360 - -0.9 780,360 - +0.8 780,360 - +2.1 780,360 - -1.8 780,360 - -2.0 780,360 - +0.8 780,423 + -0.5 780,424 - +1.9 780,531 + OHPLBJKB_00758 0.24 +0.6 780,531 + OHPLBJKB_00758 0.24 -0.8 780,531 + OHPLBJKB_00758 0.24 +2.1 780,531 + OHPLBJKB_00758 0.24 -1.3 780,531 + OHPLBJKB_00758 0.24 -2.2 780,531 + OHPLBJKB_00758 0.24 -0.4 780,532 - OHPLBJKB_00758 0.24 -0.4 780,533 + OHPLBJKB_00758 0.24 -1.5 780,586 - OHPLBJKB_00758 0.31 +0.7 780,598 + OHPLBJKB_00758 0.33 -0.3 780,598 + OHPLBJKB_00758 0.33 +0.6 780,668 + OHPLBJKB_00758 0.43 +0.2 780,675 - OHPLBJKB_00758 0.44 -0.7 780,795 + OHPLBJKB_00758 0.60 -0.9 780,797 + OHPLBJKB_00758 0.61 +1.4 780,797 + OHPLBJKB_00758 0.61 -1.4 780,797 + OHPLBJKB_00758 0.61 -0.6 780,798 - OHPLBJKB_00758 0.61 -0.9 780,835 + OHPLBJKB_00758 0.66 -2.5 780,836 - OHPLBJKB_00758 0.66 +0.6 780,862 + OHPLBJKB_00758 0.70 +1.6 780,922 + OHPLBJKB_00758 0.78 -1.7 780,923 - OHPLBJKB_00758 0.78 +1.5 781,077 + -0.4 781,077 + -0.9 781,078 - -1.5 781,078 - -0.2 781,090 + +0.1 781,100 + +1.6 781,101 - -0.1 781,154 + +1.4 781,154 + +0.3 781,155 - +1.9 781,155 - +0.4 781,167 + +1.4 781,169 + +4.7
Or see this region's nucleotide sequence