Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00560

Experiment: Z3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00559 and OHPLBJKB_00560 are separated by 400 nucleotidesOHPLBJKB_00560 and OHPLBJKB_00561 are separated by 54 nucleotidesOHPLBJKB_00561 and OHPLBJKB_00562 overlap by 11 nucleotides OHPLBJKB_00559: OHPLBJKB_00559 - putative fimbrial-like protein YraH, at 571,966 to 572,550 _00559 OHPLBJKB_00560: OHPLBJKB_00560 - Glucosamine-6-phosphate deaminase 1, at 572,951 to 573,652 _00560 OHPLBJKB_00561: OHPLBJKB_00561 - PTS system mannose-specific EIID component, at 573,707 to 574,498 _00561 OHPLBJKB_00562: OHPLBJKB_00562 - N-acetylgalactosamine permease IIC component 1, at 574,488 to 575,291 _00562 Position (kb) 572 573 574Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 571.951 kb on + strandat 571.964 kb on + strandat 571.964 kb on + strandat 571.964 kb on + strandat 571.965 kb on - strandat 571.965 kb on - strandat 571.984 kb on + strandat 572.041 kb on + strand, within OHPLBJKB_00559at 572.041 kb on + strand, within OHPLBJKB_00559at 572.041 kb on + strand, within OHPLBJKB_00559at 572.041 kb on + strand, within OHPLBJKB_00559at 572.042 kb on - strand, within OHPLBJKB_00559at 572.045 kb on + strand, within OHPLBJKB_00559at 572.045 kb on + strand, within OHPLBJKB_00559at 572.045 kb on + strand, within OHPLBJKB_00559at 572.045 kb on + strand, within OHPLBJKB_00559at 572.046 kb on - strand, within OHPLBJKB_00559at 572.046 kb on - strand, within OHPLBJKB_00559at 572.049 kb on - strand, within OHPLBJKB_00559at 572.049 kb on - strand, within OHPLBJKB_00559at 572.073 kb on + strand, within OHPLBJKB_00559at 572.073 kb on + strand, within OHPLBJKB_00559at 572.074 kb on - strand, within OHPLBJKB_00559at 572.074 kb on - strand, within OHPLBJKB_00559at 572.110 kb on - strand, within OHPLBJKB_00559at 572.188 kb on + strand, within OHPLBJKB_00559at 572.263 kb on + strand, within OHPLBJKB_00559at 572.322 kb on + strand, within OHPLBJKB_00559at 572.322 kb on + strand, within OHPLBJKB_00559at 572.327 kb on - strand, within OHPLBJKB_00559at 572.390 kb on + strand, within OHPLBJKB_00559at 572.391 kb on - strand, within OHPLBJKB_00559at 572.552 kb on + strandat 572.553 kb on - strandat 572.576 kb on - strandat 572.586 kb on - strandat 572.589 kb on + strandat 572.811 kb on + strandat 572.971 kb on + strandat 572.972 kb on - strandat 572.972 kb on - strandat 573.100 kb on + strand, within OHPLBJKB_00560at 573.152 kb on + strand, within OHPLBJKB_00560at 573.152 kb on + strand, within OHPLBJKB_00560at 573.194 kb on - strand, within OHPLBJKB_00560at 573.269 kb on + strand, within OHPLBJKB_00560at 573.269 kb on + strand, within OHPLBJKB_00560at 573.329 kb on + strand, within OHPLBJKB_00560at 573.330 kb on - strand, within OHPLBJKB_00560at 573.369 kb on - strand, within OHPLBJKB_00560at 573.415 kb on + strand, within OHPLBJKB_00560at 573.419 kb on - strand, within OHPLBJKB_00560at 573.419 kb on - strand, within OHPLBJKB_00560at 573.419 kb on - strand, within OHPLBJKB_00560at 573.513 kb on + strand, within OHPLBJKB_00560at 573.513 kb on + strand, within OHPLBJKB_00560at 573.513 kb on + strand, within OHPLBJKB_00560at 573.519 kb on + strand, within OHPLBJKB_00560at 573.519 kb on + strand, within OHPLBJKB_00560at 573.520 kb on - strand, within OHPLBJKB_00560at 573.590 kb on + strandat 573.591 kb on - strandat 573.594 kb on + strandat 573.594 kb on + strandat 573.595 kb on - strandat 573.624 kb on + strandat 573.624 kb on + strandat 573.624 kb on + strandat 573.624 kb on + strandat 573.625 kb on - strandat 573.625 kb on - strandat 573.625 kb on - strandat 573.625 kb on - strandat 573.667 kb on + strandat 573.671 kb on + strandat 573.671 kb on + strandat 573.672 kb on - strandat 573.672 kb on - strandat 573.737 kb on - strandat 573.737 kb on - strandat 573.798 kb on + strand, within OHPLBJKB_00561at 573.799 kb on - strand, within OHPLBJKB_00561at 573.799 kb on - strand, within OHPLBJKB_00561at 573.801 kb on + strand, within OHPLBJKB_00561at 573.801 kb on + strand, within OHPLBJKB_00561at 573.801 kb on + strand, within OHPLBJKB_00561at 573.801 kb on + strand, within OHPLBJKB_00561at 573.802 kb on - strand, within OHPLBJKB_00561at 573.827 kb on + strand, within OHPLBJKB_00561at 573.884 kb on - strand, within OHPLBJKB_00561at 573.916 kb on + strand, within OHPLBJKB_00561at 573.917 kb on - strand, within OHPLBJKB_00561at 573.917 kb on - strand, within OHPLBJKB_00561at 573.917 kb on - strand, within OHPLBJKB_00561at 573.924 kb on + strand, within OHPLBJKB_00561at 573.924 kb on + strand, within OHPLBJKB_00561at 573.924 kb on + strand, within OHPLBJKB_00561at 573.925 kb on - strand, within OHPLBJKB_00561at 573.925 kb on - strand, within OHPLBJKB_00561at 574.069 kb on + strand, within OHPLBJKB_00561at 574.077 kb on + strand, within OHPLBJKB_00561at 574.077 kb on + strand, within OHPLBJKB_00561at 574.163 kb on - strand, within OHPLBJKB_00561at 574.269 kb on - strand, within OHPLBJKB_00561at 574.303 kb on + strand, within OHPLBJKB_00561at 574.304 kb on - strand, within OHPLBJKB_00561at 574.307 kb on - strand, within OHPLBJKB_00561at 574.309 kb on + strand, within OHPLBJKB_00561at 574.322 kb on - strand, within OHPLBJKB_00561at 574.362 kb on + strand, within OHPLBJKB_00561at 574.363 kb on - strand, within OHPLBJKB_00561at 574.363 kb on - strand, within OHPLBJKB_00561at 574.363 kb on - strand, within OHPLBJKB_00561at 574.396 kb on + strand, within OHPLBJKB_00561at 574.396 kb on + strand, within OHPLBJKB_00561at 574.505 kb on - strandat 574.580 kb on - strand, within OHPLBJKB_00562at 574.636 kb on + strand, within OHPLBJKB_00562at 574.637 kb on - strand, within OHPLBJKB_00562

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Per-strain Table

Position Strand Gene LocusTag Fraction Z3 MOI1
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571,951 + -0.4
571,964 + -1.2
571,964 + -2.3
571,964 + +1.4
571,965 - +0.8
571,965 - -1.8
571,984 + -2.7
572,041 + OHPLBJKB_00559 0.13 -2.9
572,041 + OHPLBJKB_00559 0.13 +1.2
572,041 + OHPLBJKB_00559 0.13 -0.7
572,041 + OHPLBJKB_00559 0.13 -0.2
572,042 - OHPLBJKB_00559 0.13 +1.2
572,045 + OHPLBJKB_00559 0.14 +0.5
572,045 + OHPLBJKB_00559 0.14 +1.0
572,045 + OHPLBJKB_00559 0.14 -0.4
572,045 + OHPLBJKB_00559 0.14 +3.4
572,046 - OHPLBJKB_00559 0.14 +1.1
572,046 - OHPLBJKB_00559 0.14 -1.3
572,049 - OHPLBJKB_00559 0.14 -0.8
572,049 - OHPLBJKB_00559 0.14 +0.6
572,073 + OHPLBJKB_00559 0.18 -1.2
572,073 + OHPLBJKB_00559 0.18 +0.4
572,074 - OHPLBJKB_00559 0.18 +0.0
572,074 - OHPLBJKB_00559 0.18 +0.2
572,110 - OHPLBJKB_00559 0.25 +0.2
572,188 + OHPLBJKB_00559 0.38 +0.3
572,263 + OHPLBJKB_00559 0.51 -1.8
572,322 + OHPLBJKB_00559 0.61 -0.3
572,322 + OHPLBJKB_00559 0.61 -1.5
572,327 - OHPLBJKB_00559 0.62 +1.9
572,390 + OHPLBJKB_00559 0.72 +0.1
572,391 - OHPLBJKB_00559 0.73 -2.1
572,552 + +0.4
572,553 - -0.5
572,576 - -0.9
572,586 - +0.4
572,589 + -0.5
572,811 + -2.3
572,971 + -2.8
572,972 - +0.0
572,972 - -1.1
573,100 + OHPLBJKB_00560 0.21 +2.9
573,152 + OHPLBJKB_00560 0.29 +0.5
573,152 + OHPLBJKB_00560 0.29 -0.5
573,194 - OHPLBJKB_00560 0.35 -0.1
573,269 + OHPLBJKB_00560 0.45 +1.9
573,269 + OHPLBJKB_00560 0.45 +0.7
573,329 + OHPLBJKB_00560 0.54 -0.5
573,330 - OHPLBJKB_00560 0.54 -2.2
573,369 - OHPLBJKB_00560 0.60 -2.3
573,415 + OHPLBJKB_00560 0.66 -0.0
573,419 - OHPLBJKB_00560 0.67 -0.6
573,419 - OHPLBJKB_00560 0.67 -2.0
573,419 - OHPLBJKB_00560 0.67 -0.0
573,513 + OHPLBJKB_00560 0.80 -1.9
573,513 + OHPLBJKB_00560 0.80 -2.1
573,513 + OHPLBJKB_00560 0.80 -2.6
573,519 + OHPLBJKB_00560 0.81 -0.3
573,519 + OHPLBJKB_00560 0.81 +1.0
573,520 - OHPLBJKB_00560 0.81 +1.3
573,590 + +0.5
573,591 - -0.1
573,594 + -1.6
573,594 + -0.2
573,595 - +0.8
573,624 + +1.1
573,624 + -0.3
573,624 + +0.2
573,624 + -1.7
573,625 - -0.2
573,625 - +1.7
573,625 - -1.5
573,625 - -0.9
573,667 + -1.6
573,671 + +0.1
573,671 + -1.0
573,672 - -1.6
573,672 - -3.0
573,737 - +0.6
573,737 - -1.3
573,798 + OHPLBJKB_00561 0.11 +0.3
573,799 - OHPLBJKB_00561 0.12 -1.2
573,799 - OHPLBJKB_00561 0.12 -1.3
573,801 + OHPLBJKB_00561 0.12 +1.4
573,801 + OHPLBJKB_00561 0.12 -1.7
573,801 + OHPLBJKB_00561 0.12 -0.2
573,801 + OHPLBJKB_00561 0.12 +1.2
573,802 - OHPLBJKB_00561 0.12 +1.0
573,827 + OHPLBJKB_00561 0.15 +0.3
573,884 - OHPLBJKB_00561 0.22 -0.4
573,916 + OHPLBJKB_00561 0.26 +1.7
573,917 - OHPLBJKB_00561 0.27 +0.5
573,917 - OHPLBJKB_00561 0.27 +0.0
573,917 - OHPLBJKB_00561 0.27 -1.7
573,924 + OHPLBJKB_00561 0.27 +2.3
573,924 + OHPLBJKB_00561 0.27 -1.6
573,924 + OHPLBJKB_00561 0.27 -1.5
573,925 - OHPLBJKB_00561 0.28 +0.5
573,925 - OHPLBJKB_00561 0.28 -0.7
574,069 + OHPLBJKB_00561 0.46 +0.1
574,077 + OHPLBJKB_00561 0.47 -0.2
574,077 + OHPLBJKB_00561 0.47 +0.0
574,163 - OHPLBJKB_00561 0.58 +0.5
574,269 - OHPLBJKB_00561 0.71 -0.5
574,303 + OHPLBJKB_00561 0.75 -1.1
574,304 - OHPLBJKB_00561 0.75 -0.3
574,307 - OHPLBJKB_00561 0.76 -1.8
574,309 + OHPLBJKB_00561 0.76 +1.5
574,322 - OHPLBJKB_00561 0.78 -2.0
574,362 + OHPLBJKB_00561 0.83 +1.0
574,363 - OHPLBJKB_00561 0.83 -1.4
574,363 - OHPLBJKB_00561 0.83 -1.3
574,363 - OHPLBJKB_00561 0.83 -0.6
574,396 + OHPLBJKB_00561 0.87 -0.8
574,396 + OHPLBJKB_00561 0.87 +2.7
574,505 - +1.5
574,580 - OHPLBJKB_00562 0.11 -2.1
574,636 + OHPLBJKB_00562 0.18 +0.3
574,637 - OHPLBJKB_00562 0.19 -0.3

Or see this region's nucleotide sequence