Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00477

Experiment: Z3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00475 and OHPLBJKB_00476 are separated by 5 nucleotidesOHPLBJKB_00476 and OHPLBJKB_00477 are separated by 42 nucleotidesOHPLBJKB_00477 and OHPLBJKB_00478 are separated by 56 nucleotidesOHPLBJKB_00478 and OHPLBJKB_00479 are separated by 378 nucleotides OHPLBJKB_00475: OHPLBJKB_00475 - Stringent starvation protein A, at 489,893 to 490,531 _00475 OHPLBJKB_00476: OHPLBJKB_00476 - Stringent starvation protein B, at 490,537 to 491,034 _00476 OHPLBJKB_00477: OHPLBJKB_00477 - Putative cryptic C4-dicarboxylate transporter DcuD, at 491,077 to 492,066 _00477 OHPLBJKB_00478: OHPLBJKB_00478 - Putative cryptic C4-dicarboxylate transporter DcuD, at 492,123 to 492,443 _00478 OHPLBJKB_00479: OHPLBJKB_00479 - HTH-type transcriptional repressor NanR, at 492,822 to 493,613 _00479 Position (kb) 491 492 493Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 490.124 kb on + strand, within OHPLBJKB_00475at 490.125 kb on - strand, within OHPLBJKB_00475at 490.196 kb on + strand, within OHPLBJKB_00475at 490.196 kb on + strand, within OHPLBJKB_00475at 490.196 kb on + strand, within OHPLBJKB_00475at 490.197 kb on - strand, within OHPLBJKB_00475at 490.197 kb on - strand, within OHPLBJKB_00475at 490.197 kb on - strand, within OHPLBJKB_00475at 490.197 kb on - strand, within OHPLBJKB_00475at 490.197 kb on - strand, within OHPLBJKB_00475at 490.279 kb on + strand, within OHPLBJKB_00475at 490.280 kb on - strand, within OHPLBJKB_00475at 490.280 kb on - strand, within OHPLBJKB_00475at 490.371 kb on - strand, within OHPLBJKB_00475at 490.448 kb on + strand, within OHPLBJKB_00475at 490.448 kb on + strand, within OHPLBJKB_00475at 490.448 kb on + strand, within OHPLBJKB_00475at 490.448 kb on + strand, within OHPLBJKB_00475at 490.448 kb on + strand, within OHPLBJKB_00475at 490.449 kb on - strand, within OHPLBJKB_00475at 490.449 kb on - strand, within OHPLBJKB_00475at 490.451 kb on - strand, within OHPLBJKB_00475at 490.530 kb on - strandat 490.530 kb on - strandat 490.553 kb on + strandat 490.554 kb on - strandat 490.554 kb on - strandat 490.588 kb on + strand, within OHPLBJKB_00476at 490.588 kb on + strand, within OHPLBJKB_00476at 490.588 kb on + strand, within OHPLBJKB_00476at 490.588 kb on + strand, within OHPLBJKB_00476at 490.588 kb on + strand, within OHPLBJKB_00476at 490.588 kb on + strand, within OHPLBJKB_00476at 490.588 kb on + strand, within OHPLBJKB_00476at 490.589 kb on - strand, within OHPLBJKB_00476at 490.691 kb on + strand, within OHPLBJKB_00476at 490.745 kb on + strand, within OHPLBJKB_00476at 490.746 kb on - strand, within OHPLBJKB_00476at 490.816 kb on + strand, within OHPLBJKB_00476at 490.817 kb on - strand, within OHPLBJKB_00476at 490.817 kb on - strand, within OHPLBJKB_00476at 490.817 kb on - strand, within OHPLBJKB_00476at 490.865 kb on - strand, within OHPLBJKB_00476at 490.876 kb on - strand, within OHPLBJKB_00476at 490.876 kb on - strand, within OHPLBJKB_00476at 491.032 kb on + strandat 491.032 kb on + strandat 491.033 kb on - strandat 491.070 kb on + strandat 491.081 kb on + strandat 491.082 kb on - strandat 491.086 kb on + strandat 491.187 kb on + strand, within OHPLBJKB_00477at 491.188 kb on - strand, within OHPLBJKB_00477at 491.188 kb on - strand, within OHPLBJKB_00477at 491.254 kb on - strand, within OHPLBJKB_00477at 491.260 kb on + strand, within OHPLBJKB_00477at 491.261 kb on - strand, within OHPLBJKB_00477at 491.272 kb on + strand, within OHPLBJKB_00477at 491.272 kb on + strand, within OHPLBJKB_00477at 491.272 kb on + strand, within OHPLBJKB_00477at 491.273 kb on - strand, within OHPLBJKB_00477at 491.273 kb on - strand, within OHPLBJKB_00477at 491.273 kb on - strand, within OHPLBJKB_00477at 491.273 kb on - strand, within OHPLBJKB_00477at 491.278 kb on + strand, within OHPLBJKB_00477at 491.278 kb on + strand, within OHPLBJKB_00477at 491.278 kb on + strand, within OHPLBJKB_00477at 491.278 kb on + strand, within OHPLBJKB_00477at 491.278 kb on + strand, within OHPLBJKB_00477at 491.278 kb on + strand, within OHPLBJKB_00477at 491.279 kb on - strand, within OHPLBJKB_00477at 491.279 kb on - strand, within OHPLBJKB_00477at 491.279 kb on - strand, within OHPLBJKB_00477at 491.279 kb on - strand, within OHPLBJKB_00477at 491.279 kb on - strand, within OHPLBJKB_00477at 491.319 kb on + strand, within OHPLBJKB_00477at 491.380 kb on - strand, within OHPLBJKB_00477at 491.380 kb on - strand, within OHPLBJKB_00477at 491.456 kb on - strand, within OHPLBJKB_00477at 491.470 kb on + strand, within OHPLBJKB_00477at 491.470 kb on + strand, within OHPLBJKB_00477at 491.494 kb on + strand, within OHPLBJKB_00477at 491.565 kb on + strand, within OHPLBJKB_00477at 491.565 kb on + strand, within OHPLBJKB_00477at 491.566 kb on - strand, within OHPLBJKB_00477at 491.611 kb on + strand, within OHPLBJKB_00477at 491.704 kb on + strand, within OHPLBJKB_00477at 491.715 kb on - strand, within OHPLBJKB_00477at 491.717 kb on + strand, within OHPLBJKB_00477at 491.718 kb on - strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.984 kb on - strandat 492.011 kb on - strandat 492.030 kb on + strandat 492.030 kb on + strandat 492.054 kb on + strandat 492.083 kb on + strandat 492.083 kb on + strandat 492.083 kb on + strandat 492.083 kb on + strandat 492.083 kb on + strandat 492.084 kb on - strandat 492.084 kb on - strandat 492.084 kb on - strandat 492.084 kb on - strandat 492.084 kb on - strandat 492.099 kb on + strandat 492.099 kb on + strandat 492.102 kb on + strandat 492.102 kb on + strandat 492.259 kb on + strand, within OHPLBJKB_00478at 492.260 kb on - strand, within OHPLBJKB_00478at 492.260 kb on - strand, within OHPLBJKB_00478at 492.260 kb on - strand, within OHPLBJKB_00478at 492.277 kb on + strand, within OHPLBJKB_00478at 492.303 kb on + strand, within OHPLBJKB_00478at 492.407 kb on + strand, within OHPLBJKB_00478at 492.414 kb on + strandat 492.426 kb on + strandat 492.428 kb on + strandat 492.429 kb on - strandat 492.429 kb on - strandat 492.429 kb on - strandat 492.429 kb on - strandat 492.429 kb on - strandat 492.432 kb on + strandat 492.526 kb on - strandat 492.526 kb on - strandat 492.526 kb on - strandat 492.622 kb on - strandat 492.646 kb on + strandat 492.647 kb on - strandat 492.652 kb on + strandat 492.681 kb on + strandat 492.801 kb on + strandat 492.802 kb on - strandat 492.816 kb on + strandat 492.817 kb on - strandat 492.985 kb on + strand, within OHPLBJKB_00479at 492.985 kb on + strand, within OHPLBJKB_00479

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Per-strain Table

Position Strand Gene LocusTag Fraction Z3 MOI1
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490,124 + OHPLBJKB_00475 0.36 -0.2
490,125 - OHPLBJKB_00475 0.36 +2.7
490,196 + OHPLBJKB_00475 0.47 -1.4
490,196 + OHPLBJKB_00475 0.47 -2.0
490,196 + OHPLBJKB_00475 0.47 +1.5
490,197 - OHPLBJKB_00475 0.48 -0.7
490,197 - OHPLBJKB_00475 0.48 -0.0
490,197 - OHPLBJKB_00475 0.48 +1.1
490,197 - OHPLBJKB_00475 0.48 +0.7
490,197 - OHPLBJKB_00475 0.48 +1.9
490,279 + OHPLBJKB_00475 0.60 -0.1
490,280 - OHPLBJKB_00475 0.61 -0.9
490,280 - OHPLBJKB_00475 0.61 -0.2
490,371 - OHPLBJKB_00475 0.75 -0.7
490,448 + OHPLBJKB_00475 0.87 -1.6
490,448 + OHPLBJKB_00475 0.87 -1.5
490,448 + OHPLBJKB_00475 0.87 -0.1
490,448 + OHPLBJKB_00475 0.87 +1.6
490,448 + OHPLBJKB_00475 0.87 -0.1
490,449 - OHPLBJKB_00475 0.87 -1.2
490,449 - OHPLBJKB_00475 0.87 +1.5
490,451 - OHPLBJKB_00475 0.87 -0.6
490,530 - +1.2
490,530 - +0.9
490,553 + -0.9
490,554 - -0.8
490,554 - -0.0
490,588 + OHPLBJKB_00476 0.10 -1.1
490,588 + OHPLBJKB_00476 0.10 -1.3
490,588 + OHPLBJKB_00476 0.10 +0.1
490,588 + OHPLBJKB_00476 0.10 -3.0
490,588 + OHPLBJKB_00476 0.10 +0.8
490,588 + OHPLBJKB_00476 0.10 +1.1
490,588 + OHPLBJKB_00476 0.10 -1.5
490,589 - OHPLBJKB_00476 0.10 -0.2
490,691 + OHPLBJKB_00476 0.31 -0.9
490,745 + OHPLBJKB_00476 0.42 -2.2
490,746 - OHPLBJKB_00476 0.42 +2.0
490,816 + OHPLBJKB_00476 0.56 -1.6
490,817 - OHPLBJKB_00476 0.56 +0.2
490,817 - OHPLBJKB_00476 0.56 +0.5
490,817 - OHPLBJKB_00476 0.56 -0.9
490,865 - OHPLBJKB_00476 0.66 -0.6
490,876 - OHPLBJKB_00476 0.68 +2.1
490,876 - OHPLBJKB_00476 0.68 -1.1
491,032 + +1.2
491,032 + +1.0
491,033 - -0.7
491,070 + -2.6
491,081 + +0.2
491,082 - +1.3
491,086 + -1.1
491,187 + OHPLBJKB_00477 0.11 -1.6
491,188 - OHPLBJKB_00477 0.11 +0.1
491,188 - OHPLBJKB_00477 0.11 +0.6
491,254 - OHPLBJKB_00477 0.18 +1.4
491,260 + OHPLBJKB_00477 0.18 -0.6
491,261 - OHPLBJKB_00477 0.19 -1.3
491,272 + OHPLBJKB_00477 0.20 +1.1
491,272 + OHPLBJKB_00477 0.20 +0.1
491,272 + OHPLBJKB_00477 0.20 -1.3
491,273 - OHPLBJKB_00477 0.20 +1.2
491,273 - OHPLBJKB_00477 0.20 -0.7
491,273 - OHPLBJKB_00477 0.20 -0.4
491,273 - OHPLBJKB_00477 0.20 +0.6
491,278 + OHPLBJKB_00477 0.20 -1.3
491,278 + OHPLBJKB_00477 0.20 +0.6
491,278 + OHPLBJKB_00477 0.20 -1.5
491,278 + OHPLBJKB_00477 0.20 -2.8
491,278 + OHPLBJKB_00477 0.20 +0.4
491,278 + OHPLBJKB_00477 0.20 -0.4
491,279 - OHPLBJKB_00477 0.20 -0.0
491,279 - OHPLBJKB_00477 0.20 +1.0
491,279 - OHPLBJKB_00477 0.20 -0.4
491,279 - OHPLBJKB_00477 0.20 +1.1
491,279 - OHPLBJKB_00477 0.20 +1.1
491,319 + OHPLBJKB_00477 0.24 -0.2
491,380 - OHPLBJKB_00477 0.31 +0.6
491,380 - OHPLBJKB_00477 0.31 +0.5
491,456 - OHPLBJKB_00477 0.38 +0.9
491,470 + OHPLBJKB_00477 0.40 -0.7
491,470 + OHPLBJKB_00477 0.40 -1.3
491,494 + OHPLBJKB_00477 0.42 -0.8
491,565 + OHPLBJKB_00477 0.49 +0.4
491,565 + OHPLBJKB_00477 0.49 -1.3
491,566 - OHPLBJKB_00477 0.49 -1.7
491,611 + OHPLBJKB_00477 0.54 +0.3
491,704 + OHPLBJKB_00477 0.63 -0.3
491,715 - OHPLBJKB_00477 0.64 -0.0
491,717 + OHPLBJKB_00477 0.65 +1.0
491,718 - OHPLBJKB_00477 0.65 -0.7
491,870 + OHPLBJKB_00477 0.80 +1.9
491,870 + OHPLBJKB_00477 0.80 -0.2
491,870 + OHPLBJKB_00477 0.80 -0.9
491,870 + OHPLBJKB_00477 0.80 -1.3
491,870 + OHPLBJKB_00477 0.80 +0.9
491,870 + OHPLBJKB_00477 0.80 -1.9
491,871 - OHPLBJKB_00477 0.80 +1.0
491,871 - OHPLBJKB_00477 0.80 +1.2
491,871 - OHPLBJKB_00477 0.80 -1.8
491,871 - OHPLBJKB_00477 0.80 -0.4
491,871 - OHPLBJKB_00477 0.80 +1.5
491,871 - OHPLBJKB_00477 0.80 +0.3
491,871 - OHPLBJKB_00477 0.80 +0.4
491,871 - OHPLBJKB_00477 0.80 -1.1
491,871 - OHPLBJKB_00477 0.80 -0.9
491,871 - OHPLBJKB_00477 0.80 -2.0
491,871 - OHPLBJKB_00477 0.80 +0.6
491,871 - OHPLBJKB_00477 0.80 -1.9
491,871 - OHPLBJKB_00477 0.80 -0.2
491,984 - -2.1
492,011 - +0.3
492,030 + -1.3
492,030 + -2.0
492,054 + +0.3
492,083 + +0.3
492,083 + -0.5
492,083 + +1.3
492,083 + -0.5
492,083 + +1.5
492,084 - -2.8
492,084 - -1.1
492,084 - -0.6
492,084 - +0.9
492,084 - +0.9
492,099 + -1.0
492,099 + +0.9
492,102 + -1.2
492,102 + +1.1
492,259 + OHPLBJKB_00478 0.42 -0.5
492,260 - OHPLBJKB_00478 0.43 -2.0
492,260 - OHPLBJKB_00478 0.43 -0.9
492,260 - OHPLBJKB_00478 0.43 -1.3
492,277 + OHPLBJKB_00478 0.48 -0.4
492,303 + OHPLBJKB_00478 0.56 +2.5
492,407 + OHPLBJKB_00478 0.88 -2.8
492,414 + +2.1
492,426 + -0.1
492,428 + -1.1
492,429 - -2.6
492,429 - +1.2
492,429 - +0.4
492,429 - -0.4
492,429 - +0.1
492,432 + -2.1
492,526 - +0.9
492,526 - -2.1
492,526 - -1.0
492,622 - +3.1
492,646 + -2.0
492,647 - +0.9
492,652 + +1.2
492,681 + +1.0
492,801 + -0.1
492,802 - -0.3
492,816 + -1.8
492,817 - -0.8
492,985 + OHPLBJKB_00479 0.21 +0.5
492,985 + OHPLBJKB_00479 0.21 -1.6

Or see this region's nucleotide sequence