Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00460

Experiment: Z3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00459 and OHPLBJKB_00460 are separated by 429 nucleotidesOHPLBJKB_00460 and OHPLBJKB_00461 are separated by 133 nucleotides OHPLBJKB_00459: OHPLBJKB_00459 - hypothetical protein, at 471,055 to 474,855 _00459 OHPLBJKB_00460: OHPLBJKB_00460 - Metalloprotease TldD, at 475,285 to 476,730 _00460 OHPLBJKB_00461: OHPLBJKB_00461 - HTH-type transcriptional regulator DmlR, at 476,864 to 477,793 _00461 Position (kb) 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 474.314 kb on + strand, within OHPLBJKB_00459at 474.314 kb on + strand, within OHPLBJKB_00459at 474.315 kb on - strand, within OHPLBJKB_00459at 474.325 kb on - strand, within OHPLBJKB_00459at 474.325 kb on - strand, within OHPLBJKB_00459at 474.372 kb on + strand, within OHPLBJKB_00459at 474.372 kb on + strand, within OHPLBJKB_00459at 474.446 kb on + strand, within OHPLBJKB_00459at 474.446 kb on + strand, within OHPLBJKB_00459at 474.447 kb on - strand, within OHPLBJKB_00459at 474.447 kb on - strand, within OHPLBJKB_00459at 474.447 kb on - strand, within OHPLBJKB_00459at 474.447 kb on - strand, within OHPLBJKB_00459at 474.538 kb on - strandat 474.620 kb on + strandat 474.735 kb on + strandat 474.736 kb on - strandat 474.871 kb on + strandat 474.889 kb on - strandat 474.889 kb on - strandat 474.931 kb on + strandat 474.931 kb on + strandat 474.932 kb on - strandat 475.003 kb on + strandat 475.017 kb on - strandat 475.017 kb on - strandat 475.017 kb on - strandat 475.017 kb on - strandat 475.023 kb on - strandat 475.023 kb on - strandat 475.023 kb on - strandat 475.032 kb on - strandat 475.041 kb on - strandat 475.113 kb on + strandat 475.200 kb on - strandat 475.263 kb on + strandat 475.264 kb on - strandat 475.302 kb on - strandat 475.414 kb on + strandat 475.414 kb on + strandat 475.415 kb on - strandat 475.434 kb on - strand, within OHPLBJKB_00460at 475.449 kb on + strand, within OHPLBJKB_00460at 475.462 kb on + strand, within OHPLBJKB_00460at 475.462 kb on + strand, within OHPLBJKB_00460at 475.462 kb on + strand, within OHPLBJKB_00460at 475.463 kb on - strand, within OHPLBJKB_00460at 475.463 kb on - strand, within OHPLBJKB_00460at 475.463 kb on - strand, within OHPLBJKB_00460at 475.603 kb on - strand, within OHPLBJKB_00460at 475.608 kb on - strand, within OHPLBJKB_00460at 475.608 kb on - strand, within OHPLBJKB_00460at 475.642 kb on + strand, within OHPLBJKB_00460at 475.642 kb on + strand, within OHPLBJKB_00460at 475.642 kb on + strand, within OHPLBJKB_00460at 475.642 kb on + strand, within OHPLBJKB_00460at 475.642 kb on + strand, within OHPLBJKB_00460at 475.642 kb on + strand, within OHPLBJKB_00460at 475.642 kb on + strand, within OHPLBJKB_00460at 475.643 kb on - strand, within OHPLBJKB_00460at 475.643 kb on - strand, within OHPLBJKB_00460at 475.643 kb on - strand, within OHPLBJKB_00460at 475.644 kb on + strand, within OHPLBJKB_00460at 475.644 kb on + strand, within OHPLBJKB_00460at 475.644 kb on + strand, within OHPLBJKB_00460at 475.645 kb on - strand, within OHPLBJKB_00460at 475.710 kb on + strand, within OHPLBJKB_00460at 475.771 kb on + strand, within OHPLBJKB_00460at 475.778 kb on + strand, within OHPLBJKB_00460at 475.912 kb on + strand, within OHPLBJKB_00460at 476.037 kb on - strand, within OHPLBJKB_00460at 476.123 kb on + strand, within OHPLBJKB_00460at 476.124 kb on - strand, within OHPLBJKB_00460at 476.127 kb on + strand, within OHPLBJKB_00460at 476.128 kb on - strand, within OHPLBJKB_00460at 476.229 kb on + strand, within OHPLBJKB_00460at 476.242 kb on + strand, within OHPLBJKB_00460at 476.243 kb on - strand, within OHPLBJKB_00460at 476.243 kb on - strand, within OHPLBJKB_00460at 476.278 kb on + strand, within OHPLBJKB_00460at 476.347 kb on + strand, within OHPLBJKB_00460at 476.347 kb on + strand, within OHPLBJKB_00460at 476.383 kb on + strand, within OHPLBJKB_00460at 476.383 kb on + strand, within OHPLBJKB_00460at 476.383 kb on + strand, within OHPLBJKB_00460at 476.383 kb on + strand, within OHPLBJKB_00460at 476.383 kb on + strand, within OHPLBJKB_00460at 476.383 kb on + strand, within OHPLBJKB_00460at 476.383 kb on + strand, within OHPLBJKB_00460at 476.383 kb on + strand, within OHPLBJKB_00460at 476.384 kb on - strand, within OHPLBJKB_00460at 476.384 kb on - strand, within OHPLBJKB_00460at 476.384 kb on - strand, within OHPLBJKB_00460at 476.384 kb on - strand, within OHPLBJKB_00460at 476.384 kb on - strand, within OHPLBJKB_00460at 476.384 kb on - strand, within OHPLBJKB_00460at 476.384 kb on - strand, within OHPLBJKB_00460at 476.384 kb on - strand, within OHPLBJKB_00460at 476.384 kb on - strand, within OHPLBJKB_00460at 476.384 kb on - strand, within OHPLBJKB_00460at 476.385 kb on + strand, within OHPLBJKB_00460at 476.385 kb on + strand, within OHPLBJKB_00460at 476.386 kb on - strand, within OHPLBJKB_00460at 476.386 kb on - strand, within OHPLBJKB_00460at 476.386 kb on - strand, within OHPLBJKB_00460at 476.386 kb on - strand, within OHPLBJKB_00460at 476.418 kb on + strand, within OHPLBJKB_00460at 476.440 kb on - strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.443 kb on + strand, within OHPLBJKB_00460at 476.444 kb on - strand, within OHPLBJKB_00460at 476.444 kb on - strand, within OHPLBJKB_00460at 476.444 kb on - strand, within OHPLBJKB_00460at 476.444 kb on - strand, within OHPLBJKB_00460at 476.444 kb on - strand, within OHPLBJKB_00460at 476.444 kb on - strand, within OHPLBJKB_00460at 476.516 kb on - strand, within OHPLBJKB_00460at 476.516 kb on - strand, within OHPLBJKB_00460at 476.537 kb on + strand, within OHPLBJKB_00460at 476.754 kb on + strandat 476.767 kb on + strandat 476.847 kb on + strandat 476.847 kb on + strandat 476.848 kb on - strandat 476.853 kb on + strandat 476.858 kb on + strandat 476.858 kb on + strandat 476.865 kb on + strandat 476.865 kb on + strandat 476.866 kb on - strandat 476.923 kb on - strandat 476.952 kb on - strandat 476.952 kb on - strandat 476.982 kb on + strand, within OHPLBJKB_00461at 476.982 kb on + strand, within OHPLBJKB_00461at 476.982 kb on + strand, within OHPLBJKB_00461at 476.982 kb on + strand, within OHPLBJKB_00461at 476.982 kb on + strand, within OHPLBJKB_00461at 476.982 kb on + strand, within OHPLBJKB_00461at 476.982 kb on + strand, within OHPLBJKB_00461at 476.983 kb on - strand, within OHPLBJKB_00461at 476.983 kb on - strand, within OHPLBJKB_00461at 476.983 kb on - strand, within OHPLBJKB_00461at 476.992 kb on - strand, within OHPLBJKB_00461at 477.015 kb on + strand, within OHPLBJKB_00461at 477.082 kb on - strand, within OHPLBJKB_00461at 477.133 kb on + strand, within OHPLBJKB_00461at 477.368 kb on + strand, within OHPLBJKB_00461at 477.368 kb on + strand, within OHPLBJKB_00461at 477.490 kb on + strand, within OHPLBJKB_00461at 477.491 kb on - strand, within OHPLBJKB_00461at 477.598 kb on - strand, within OHPLBJKB_00461at 477.600 kb on + strand, within OHPLBJKB_00461at 477.600 kb on + strand, within OHPLBJKB_00461at 477.637 kb on + strand, within OHPLBJKB_00461at 477.648 kb on - strand, within OHPLBJKB_00461at 477.657 kb on - strand, within OHPLBJKB_00461at 477.716 kb on + strandat 477.717 kb on - strandat 477.717 kb on - strandat 477.717 kb on - strandat 477.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Z3 MOI1
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474,314 + OHPLBJKB_00459 0.86 -1.1
474,314 + OHPLBJKB_00459 0.86 -1.7
474,315 - OHPLBJKB_00459 0.86 -1.4
474,325 - OHPLBJKB_00459 0.86 -0.7
474,325 - OHPLBJKB_00459 0.86 +0.3
474,372 + OHPLBJKB_00459 0.87 +0.3
474,372 + OHPLBJKB_00459 0.87 -1.7
474,446 + OHPLBJKB_00459 0.89 -1.9
474,446 + OHPLBJKB_00459 0.89 +0.4
474,447 - OHPLBJKB_00459 0.89 +1.6
474,447 - OHPLBJKB_00459 0.89 -1.5
474,447 - OHPLBJKB_00459 0.89 -1.2
474,447 - OHPLBJKB_00459 0.89 +4.8
474,538 - +0.5
474,620 + +0.7
474,735 + -0.1
474,736 - +0.5
474,871 + -0.2
474,889 - -1.9
474,889 - -1.6
474,931 + +1.5
474,931 + +0.9
474,932 - +1.9
475,003 + -0.7
475,017 - -0.3
475,017 - -3.3
475,017 - -0.5
475,017 - +2.1
475,023 - -0.9
475,023 - -1.0
475,023 - +0.1
475,032 - +0.0
475,041 - -0.7
475,113 + +0.4
475,200 - -0.5
475,263 + -1.8
475,264 - -1.9
475,302 - -2.3
475,414 + +1.8
475,414 + -2.1
475,415 - -0.8
475,434 - OHPLBJKB_00460 0.10 -1.4
475,449 + OHPLBJKB_00460 0.11 +1.3
475,462 + OHPLBJKB_00460 0.12 -0.7
475,462 + OHPLBJKB_00460 0.12 +0.1
475,462 + OHPLBJKB_00460 0.12 -0.6
475,463 - OHPLBJKB_00460 0.12 +3.7
475,463 - OHPLBJKB_00460 0.12 +0.1
475,463 - OHPLBJKB_00460 0.12 -0.6
475,603 - OHPLBJKB_00460 0.22 +1.1
475,608 - OHPLBJKB_00460 0.22 +3.9
475,608 - OHPLBJKB_00460 0.22 +1.2
475,642 + OHPLBJKB_00460 0.25 -2.5
475,642 + OHPLBJKB_00460 0.25 -0.8
475,642 + OHPLBJKB_00460 0.25 +0.3
475,642 + OHPLBJKB_00460 0.25 +0.1
475,642 + OHPLBJKB_00460 0.25 -2.0
475,642 + OHPLBJKB_00460 0.25 +2.5
475,642 + OHPLBJKB_00460 0.25 +1.6
475,643 - OHPLBJKB_00460 0.25 +1.3
475,643 - OHPLBJKB_00460 0.25 +1.7
475,643 - OHPLBJKB_00460 0.25 +1.7
475,644 + OHPLBJKB_00460 0.25 +0.6
475,644 + OHPLBJKB_00460 0.25 +0.5
475,644 + OHPLBJKB_00460 0.25 +1.3
475,645 - OHPLBJKB_00460 0.25 -2.6
475,710 + OHPLBJKB_00460 0.29 +0.0
475,771 + OHPLBJKB_00460 0.34 -0.4
475,778 + OHPLBJKB_00460 0.34 -1.7
475,912 + OHPLBJKB_00460 0.43 -0.2
476,037 - OHPLBJKB_00460 0.52 +1.1
476,123 + OHPLBJKB_00460 0.58 +0.8
476,124 - OHPLBJKB_00460 0.58 -0.4
476,127 + OHPLBJKB_00460 0.58 -0.9
476,128 - OHPLBJKB_00460 0.58 +0.9
476,229 + OHPLBJKB_00460 0.65 -1.5
476,242 + OHPLBJKB_00460 0.66 -1.4
476,243 - OHPLBJKB_00460 0.66 +1.3
476,243 - OHPLBJKB_00460 0.66 +1.3
476,278 + OHPLBJKB_00460 0.69 +2.4
476,347 + OHPLBJKB_00460 0.73 +0.2
476,347 + OHPLBJKB_00460 0.73 +0.2
476,383 + OHPLBJKB_00460 0.76 -2.9
476,383 + OHPLBJKB_00460 0.76 -3.1
476,383 + OHPLBJKB_00460 0.76 -1.6
476,383 + OHPLBJKB_00460 0.76 -1.4
476,383 + OHPLBJKB_00460 0.76 -1.7
476,383 + OHPLBJKB_00460 0.76 -0.4
476,383 + OHPLBJKB_00460 0.76 +1.2
476,383 + OHPLBJKB_00460 0.76 -2.3
476,384 - OHPLBJKB_00460 0.76 -0.2
476,384 - OHPLBJKB_00460 0.76 -1.2
476,384 - OHPLBJKB_00460 0.76 +0.6
476,384 - OHPLBJKB_00460 0.76 -1.3
476,384 - OHPLBJKB_00460 0.76 +0.6
476,384 - OHPLBJKB_00460 0.76 -1.2
476,384 - OHPLBJKB_00460 0.76 -1.6
476,384 - OHPLBJKB_00460 0.76 -2.0
476,384 - OHPLBJKB_00460 0.76 +0.4
476,384 - OHPLBJKB_00460 0.76 -3.6
476,385 + OHPLBJKB_00460 0.76 -2.2
476,385 + OHPLBJKB_00460 0.76 -0.2
476,386 - OHPLBJKB_00460 0.76 +0.2
476,386 - OHPLBJKB_00460 0.76 +2.0
476,386 - OHPLBJKB_00460 0.76 -0.9
476,386 - OHPLBJKB_00460 0.76 -1.4
476,418 + OHPLBJKB_00460 0.78 -0.3
476,440 - OHPLBJKB_00460 0.80 +2.7
476,443 + OHPLBJKB_00460 0.80 +1.1
476,443 + OHPLBJKB_00460 0.80 +0.8
476,443 + OHPLBJKB_00460 0.80 -0.3
476,443 + OHPLBJKB_00460 0.80 -1.1
476,443 + OHPLBJKB_00460 0.80 +1.1
476,443 + OHPLBJKB_00460 0.80 +1.0
476,443 + OHPLBJKB_00460 0.80 +0.3
476,443 + OHPLBJKB_00460 0.80 -0.3
476,443 + OHPLBJKB_00460 0.80 +0.7
476,443 + OHPLBJKB_00460 0.80 -0.9
476,443 + OHPLBJKB_00460 0.80 +2.1
476,443 + OHPLBJKB_00460 0.80 +0.1
476,444 - OHPLBJKB_00460 0.80 +0.5
476,444 - OHPLBJKB_00460 0.80 +0.2
476,444 - OHPLBJKB_00460 0.80 +0.4
476,444 - OHPLBJKB_00460 0.80 -1.4
476,444 - OHPLBJKB_00460 0.80 -0.0
476,444 - OHPLBJKB_00460 0.80 +0.6
476,516 - OHPLBJKB_00460 0.85 +0.3
476,516 - OHPLBJKB_00460 0.85 +1.4
476,537 + OHPLBJKB_00460 0.87 +2.3
476,754 + -1.7
476,767 + -1.6
476,847 + +0.9
476,847 + -0.1
476,848 - -1.6
476,853 + -0.3
476,858 + +2.6
476,858 + +0.5
476,865 + -2.1
476,865 + -2.5
476,866 - +0.9
476,923 - -2.2
476,952 - -2.0
476,952 - +1.1
476,982 + OHPLBJKB_00461 0.13 +2.8
476,982 + OHPLBJKB_00461 0.13 -1.7
476,982 + OHPLBJKB_00461 0.13 -0.5
476,982 + OHPLBJKB_00461 0.13 +0.5
476,982 + OHPLBJKB_00461 0.13 -1.2
476,982 + OHPLBJKB_00461 0.13 -0.5
476,982 + OHPLBJKB_00461 0.13 -1.2
476,983 - OHPLBJKB_00461 0.13 -1.0
476,983 - OHPLBJKB_00461 0.13 -0.9
476,983 - OHPLBJKB_00461 0.13 -2.0
476,992 - OHPLBJKB_00461 0.14 -0.2
477,015 + OHPLBJKB_00461 0.16 -1.9
477,082 - OHPLBJKB_00461 0.23 -0.6
477,133 + OHPLBJKB_00461 0.29 -2.1
477,368 + OHPLBJKB_00461 0.54 +0.8
477,368 + OHPLBJKB_00461 0.54 +0.9
477,490 + OHPLBJKB_00461 0.67 -1.2
477,491 - OHPLBJKB_00461 0.67 -0.7
477,598 - OHPLBJKB_00461 0.79 +0.6
477,600 + OHPLBJKB_00461 0.79 +0.3
477,600 + OHPLBJKB_00461 0.79 -1.8
477,637 + OHPLBJKB_00461 0.83 -0.5
477,648 - OHPLBJKB_00461 0.84 +1.5
477,657 - OHPLBJKB_00461 0.85 -0.7
477,716 + -0.9
477,717 - -1.4
477,717 - +0.3
477,717 - +0.6
477,717 - -0.1

Or see this region's nucleotide sequence