Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00181

Experiment: Z3 MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00180 and OHPLBJKB_00181 are separated by 48 nucleotidesOHPLBJKB_00181 and OHPLBJKB_00182 are separated by 447 nucleotides OHPLBJKB_00180: OHPLBJKB_00180 - Inner membrane protein YhjD, at 195,214 to 196,227 _00180 OHPLBJKB_00181: OHPLBJKB_00181 - HTH-type transcriptional regulator DmlR, at 196,276 to 197,247 _00181 OHPLBJKB_00182: OHPLBJKB_00182 - Putative HTH-type transcriptional regulator YhjB, at 197,695 to 198,297 _00182 Position (kb) 196 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 195.383 kb on + strand, within OHPLBJKB_00180at 195.383 kb on + strand, within OHPLBJKB_00180at 195.383 kb on + strand, within OHPLBJKB_00180at 195.384 kb on - strand, within OHPLBJKB_00180at 195.384 kb on - strand, within OHPLBJKB_00180at 195.399 kb on + strand, within OHPLBJKB_00180at 195.418 kb on - strand, within OHPLBJKB_00180at 195.503 kb on + strand, within OHPLBJKB_00180at 195.504 kb on - strand, within OHPLBJKB_00180at 195.586 kb on - strand, within OHPLBJKB_00180at 195.589 kb on - strand, within OHPLBJKB_00180at 195.683 kb on + strand, within OHPLBJKB_00180at 195.683 kb on + strand, within OHPLBJKB_00180at 195.684 kb on - strand, within OHPLBJKB_00180at 195.788 kb on + strand, within OHPLBJKB_00180at 195.826 kb on - strand, within OHPLBJKB_00180at 195.826 kb on - strand, within OHPLBJKB_00180at 195.919 kb on + strand, within OHPLBJKB_00180at 195.919 kb on + strand, within OHPLBJKB_00180at 195.982 kb on + strand, within OHPLBJKB_00180at 196.004 kb on + strand, within OHPLBJKB_00180at 196.004 kb on + strand, within OHPLBJKB_00180at 196.005 kb on - strand, within OHPLBJKB_00180at 196.005 kb on - strand, within OHPLBJKB_00180at 196.077 kb on + strand, within OHPLBJKB_00180at 196.135 kb on - strandat 196.267 kb on + strandat 196.269 kb on + strandat 196.270 kb on - strandat 196.298 kb on - strandat 196.327 kb on + strandat 196.358 kb on + strandat 196.400 kb on - strand, within OHPLBJKB_00181at 196.402 kb on + strand, within OHPLBJKB_00181at 196.402 kb on + strand, within OHPLBJKB_00181at 196.410 kb on + strand, within OHPLBJKB_00181at 196.511 kb on - strand, within OHPLBJKB_00181at 196.534 kb on - strand, within OHPLBJKB_00181at 196.534 kb on - strand, within OHPLBJKB_00181at 196.582 kb on + strand, within OHPLBJKB_00181at 196.583 kb on - strand, within OHPLBJKB_00181at 196.583 kb on - strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.599 kb on + strand, within OHPLBJKB_00181at 196.600 kb on - strand, within OHPLBJKB_00181at 196.601 kb on + strand, within OHPLBJKB_00181at 196.601 kb on + strand, within OHPLBJKB_00181at 196.610 kb on - strand, within OHPLBJKB_00181at 196.664 kb on + strand, within OHPLBJKB_00181at 196.665 kb on - strand, within OHPLBJKB_00181at 196.747 kb on + strand, within OHPLBJKB_00181at 196.776 kb on + strand, within OHPLBJKB_00181at 196.777 kb on - strand, within OHPLBJKB_00181at 196.777 kb on - strand, within OHPLBJKB_00181at 196.780 kb on + strand, within OHPLBJKB_00181at 196.894 kb on + strand, within OHPLBJKB_00181at 196.895 kb on - strand, within OHPLBJKB_00181at 196.900 kb on - strand, within OHPLBJKB_00181at 196.979 kb on + strand, within OHPLBJKB_00181at 196.980 kb on - strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.982 kb on + strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 196.983 kb on - strand, within OHPLBJKB_00181at 197.066 kb on - strand, within OHPLBJKB_00181at 197.352 kb on + strandat 197.390 kb on + strandat 197.475 kb on + strandat 197.475 kb on + strandat 197.476 kb on - strandat 197.476 kb on - strandat 197.476 kb on - strandat 197.478 kb on + strandat 197.491 kb on - strandat 197.491 kb on - strandat 197.517 kb on + strandat 197.548 kb on - strandat 197.558 kb on - strandat 197.574 kb on - strandat 197.674 kb on + strandat 197.675 kb on - strandat 197.675 kb on - strandat 197.702 kb on + strandat 197.730 kb on + strandat 197.731 kb on - strandat 197.764 kb on - strand, within OHPLBJKB_00182at 197.778 kb on + strand, within OHPLBJKB_00182at 197.778 kb on + strand, within OHPLBJKB_00182at 197.827 kb on + strand, within OHPLBJKB_00182at 197.840 kb on + strand, within OHPLBJKB_00182at 197.840 kb on + strand, within OHPLBJKB_00182at 197.840 kb on + strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.841 kb on - strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.844 kb on + strand, within OHPLBJKB_00182at 197.845 kb on - strand, within OHPLBJKB_00182at 197.979 kb on + strand, within OHPLBJKB_00182at 197.980 kb on - strand, within OHPLBJKB_00182at 198.036 kb on - strand, within OHPLBJKB_00182at 198.040 kb on - strand, within OHPLBJKB_00182at 198.102 kb on + strand, within OHPLBJKB_00182at 198.103 kb on - strand, within OHPLBJKB_00182at 198.143 kb on + strand, within OHPLBJKB_00182at 198.171 kb on + strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.172 kb on - strand, within OHPLBJKB_00182at 198.196 kb on - strand, within OHPLBJKB_00182

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Per-strain Table

Position Strand Gene LocusTag Fraction Z3 MOI1
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195,383 + OHPLBJKB_00180 0.17 +1.1
195,383 + OHPLBJKB_00180 0.17 -1.4
195,383 + OHPLBJKB_00180 0.17 +1.3
195,384 - OHPLBJKB_00180 0.17 +2.1
195,384 - OHPLBJKB_00180 0.17 -0.6
195,399 + OHPLBJKB_00180 0.18 +0.8
195,418 - OHPLBJKB_00180 0.20 +1.1
195,503 + OHPLBJKB_00180 0.29 -0.9
195,504 - OHPLBJKB_00180 0.29 -0.4
195,586 - OHPLBJKB_00180 0.37 -0.9
195,589 - OHPLBJKB_00180 0.37 -3.2
195,683 + OHPLBJKB_00180 0.46 -0.5
195,683 + OHPLBJKB_00180 0.46 -2.3
195,684 - OHPLBJKB_00180 0.46 +0.2
195,788 + OHPLBJKB_00180 0.57 +1.6
195,826 - OHPLBJKB_00180 0.60 +0.3
195,826 - OHPLBJKB_00180 0.60 -2.0
195,919 + OHPLBJKB_00180 0.70 -2.3
195,919 + OHPLBJKB_00180 0.70 -2.2
195,982 + OHPLBJKB_00180 0.76 -0.4
196,004 + OHPLBJKB_00180 0.78 +3.3
196,004 + OHPLBJKB_00180 0.78 -0.2
196,005 - OHPLBJKB_00180 0.78 +1.1
196,005 - OHPLBJKB_00180 0.78 +0.1
196,077 + OHPLBJKB_00180 0.85 +0.9
196,135 - +0.7
196,267 + +1.1
196,269 + -0.1
196,270 - -1.0
196,298 - -1.0
196,327 + +0.3
196,358 + -1.9
196,400 - OHPLBJKB_00181 0.13 -0.2
196,402 + OHPLBJKB_00181 0.13 +0.9
196,402 + OHPLBJKB_00181 0.13 +0.2
196,410 + OHPLBJKB_00181 0.14 +1.6
196,511 - OHPLBJKB_00181 0.24 -2.6
196,534 - OHPLBJKB_00181 0.27 +0.9
196,534 - OHPLBJKB_00181 0.27 +4.0
196,582 + OHPLBJKB_00181 0.31 +0.1
196,583 - OHPLBJKB_00181 0.32 +1.7
196,583 - OHPLBJKB_00181 0.32 +0.9
196,599 + OHPLBJKB_00181 0.33 -1.9
196,599 + OHPLBJKB_00181 0.33 -1.9
196,599 + OHPLBJKB_00181 0.33 +0.7
196,599 + OHPLBJKB_00181 0.33 +0.7
196,599 + OHPLBJKB_00181 0.33 -0.4
196,599 + OHPLBJKB_00181 0.33 +0.8
196,599 + OHPLBJKB_00181 0.33 +2.2
196,599 + OHPLBJKB_00181 0.33 -0.1
196,600 - OHPLBJKB_00181 0.33 -1.2
196,601 + OHPLBJKB_00181 0.33 -0.8
196,601 + OHPLBJKB_00181 0.33 +2.2
196,610 - OHPLBJKB_00181 0.34 -2.8
196,664 + OHPLBJKB_00181 0.40 -1.7
196,665 - OHPLBJKB_00181 0.40 +0.2
196,747 + OHPLBJKB_00181 0.48 -0.3
196,776 + OHPLBJKB_00181 0.51 -2.0
196,777 - OHPLBJKB_00181 0.52 -1.3
196,777 - OHPLBJKB_00181 0.52 -0.9
196,780 + OHPLBJKB_00181 0.52 +1.4
196,894 + OHPLBJKB_00181 0.64 -1.3
196,895 - OHPLBJKB_00181 0.64 -1.7
196,900 - OHPLBJKB_00181 0.64 -0.4
196,979 + OHPLBJKB_00181 0.72 +1.9
196,980 - OHPLBJKB_00181 0.72 +0.3
196,982 + OHPLBJKB_00181 0.73 +0.7
196,982 + OHPLBJKB_00181 0.73 -0.4
196,982 + OHPLBJKB_00181 0.73 -0.7
196,982 + OHPLBJKB_00181 0.73 -0.5
196,983 - OHPLBJKB_00181 0.73 -0.8
196,983 - OHPLBJKB_00181 0.73 -2.1
196,983 - OHPLBJKB_00181 0.73 -0.5
196,983 - OHPLBJKB_00181 0.73 +1.8
196,983 - OHPLBJKB_00181 0.73 +1.0
196,983 - OHPLBJKB_00181 0.73 +0.3
197,066 - OHPLBJKB_00181 0.81 +0.3
197,352 + -0.1
197,390 + +3.7
197,475 + +1.4
197,475 + -0.1
197,476 - -0.5
197,476 - -2.5
197,476 - -3.1
197,478 + -0.9
197,491 - +0.1
197,491 - +0.9
197,517 + +0.8
197,548 - +0.2
197,558 - -2.2
197,574 - +1.2
197,674 + -1.3
197,675 - -0.6
197,675 - +1.7
197,702 + +0.7
197,730 + -1.9
197,731 - -2.8
197,764 - OHPLBJKB_00182 0.11 +1.3
197,778 + OHPLBJKB_00182 0.14 +0.9
197,778 + OHPLBJKB_00182 0.14 +0.6
197,827 + OHPLBJKB_00182 0.22 -1.2
197,840 + OHPLBJKB_00182 0.24 +1.0
197,840 + OHPLBJKB_00182 0.24 +0.0
197,840 + OHPLBJKB_00182 0.24 +0.6
197,841 - OHPLBJKB_00182 0.24 +0.0
197,841 - OHPLBJKB_00182 0.24 -0.9
197,841 - OHPLBJKB_00182 0.24 -1.2
197,841 - OHPLBJKB_00182 0.24 -0.9
197,844 + OHPLBJKB_00182 0.25 -1.2
197,844 + OHPLBJKB_00182 0.25 -0.1
197,844 + OHPLBJKB_00182 0.25 -2.1
197,844 + OHPLBJKB_00182 0.25 -1.1
197,845 - OHPLBJKB_00182 0.25 +0.8
197,979 + OHPLBJKB_00182 0.47 +1.9
197,980 - OHPLBJKB_00182 0.47 +0.6
198,036 - OHPLBJKB_00182 0.57 -1.1
198,040 - OHPLBJKB_00182 0.57 +1.0
198,102 + OHPLBJKB_00182 0.67 -1.8
198,103 - OHPLBJKB_00182 0.68 +0.1
198,143 + OHPLBJKB_00182 0.74 +2.8
198,171 + OHPLBJKB_00182 0.79 +1.6
198,172 - OHPLBJKB_00182 0.79 -0.3
198,172 - OHPLBJKB_00182 0.79 -0.0
198,172 - OHPLBJKB_00182 0.79 +0.0
198,172 - OHPLBJKB_00182 0.79 -0.4
198,196 - OHPLBJKB_00182 0.83 -0.1

Or see this region's nucleotide sequence