Experiment: Z3 MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00102 and OHPLBJKB_00103 are separated by 229 nucleotides OHPLBJKB_00103 and OHPLBJKB_00104 are separated by 536 nucleotides OHPLBJKB_00104 and OHPLBJKB_00105 are separated by 2 nucleotides
OHPLBJKB_00102: OHPLBJKB_00102 - Mannitol-1-phosphate 5-dehydrogenase, at 108,799 to 109,947
_00102
OHPLBJKB_00103: OHPLBJKB_00103 - PTS system mannitol-specific EIICBA component, at 110,177 to 112,090
_00103
OHPLBJKB_00104: OHPLBJKB_00104 - Inner membrane protein YiaW, at 112,627 to 112,989
_00104
OHPLBJKB_00105: OHPLBJKB_00105 - Inner membrane protein YibH, at 112,992 to 114,128
_00105
Position (kb) 110
111
112
113 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 109.285 kb on - strand, within OHPLBJKB_00102 at 109.285 kb on - strand, within OHPLBJKB_00102 at 109.285 kb on - strand, within OHPLBJKB_00102 at 109.443 kb on + strand, within OHPLBJKB_00102 at 109.510 kb on + strand, within OHPLBJKB_00102 at 109.665 kb on + strand, within OHPLBJKB_00102 at 109.777 kb on + strand, within OHPLBJKB_00102 at 109.804 kb on + strand, within OHPLBJKB_00102 at 109.804 kb on + strand, within OHPLBJKB_00102 at 109.804 kb on + strand, within OHPLBJKB_00102 at 109.805 kb on - strand, within OHPLBJKB_00102 at 109.805 kb on - strand, within OHPLBJKB_00102 at 109.815 kb on + strand, within OHPLBJKB_00102 at 109.815 kb on + strand, within OHPLBJKB_00102 at 109.815 kb on + strand, within OHPLBJKB_00102 at 109.840 kb on + strand at 109.950 kb on + strand at 109.953 kb on + strand at 110.050 kb on + strand at 110.068 kb on + strand at 110.109 kb on - strand at 110.118 kb on - strand at 110.179 kb on - strand at 110.179 kb on - strand at 110.182 kb on + strand at 110.183 kb on - strand at 110.183 kb on - strand at 110.314 kb on + strand at 110.315 kb on - strand at 110.500 kb on - strand, within OHPLBJKB_00103 at 110.500 kb on - strand, within OHPLBJKB_00103 at 110.500 kb on - strand, within OHPLBJKB_00103 at 110.500 kb on - strand, within OHPLBJKB_00103 at 110.618 kb on - strand, within OHPLBJKB_00103 at 110.658 kb on - strand, within OHPLBJKB_00103 at 110.752 kb on + strand, within OHPLBJKB_00103 at 110.752 kb on + strand, within OHPLBJKB_00103 at 110.752 kb on + strand, within OHPLBJKB_00103 at 110.752 kb on + strand, within OHPLBJKB_00103 at 110.752 kb on + strand, within OHPLBJKB_00103 at 110.752 kb on + strand, within OHPLBJKB_00103 at 110.752 kb on + strand, within OHPLBJKB_00103 at 110.753 kb on - strand, within OHPLBJKB_00103 at 110.753 kb on - strand, within OHPLBJKB_00103 at 110.753 kb on - strand, within OHPLBJKB_00103 at 110.851 kb on + strand, within OHPLBJKB_00103 at 110.852 kb on - strand, within OHPLBJKB_00103 at 110.852 kb on - strand, within OHPLBJKB_00103 at 110.852 kb on - strand, within OHPLBJKB_00103 at 110.894 kb on - strand, within OHPLBJKB_00103 at 110.956 kb on + strand, within OHPLBJKB_00103 at 110.956 kb on + strand, within OHPLBJKB_00103 at 110.956 kb on + strand, within OHPLBJKB_00103 at 110.960 kb on + strand, within OHPLBJKB_00103 at 110.961 kb on - strand, within OHPLBJKB_00103 at 111.013 kb on + strand, within OHPLBJKB_00103 at 111.058 kb on + strand, within OHPLBJKB_00103 at 111.097 kb on + strand, within OHPLBJKB_00103 at 111.098 kb on - strand, within OHPLBJKB_00103 at 111.156 kb on + strand, within OHPLBJKB_00103 at 111.156 kb on + strand, within OHPLBJKB_00103 at 111.156 kb on + strand, within OHPLBJKB_00103 at 111.156 kb on + strand, within OHPLBJKB_00103 at 111.156 kb on + strand, within OHPLBJKB_00103 at 111.157 kb on - strand, within OHPLBJKB_00103 at 111.157 kb on - strand, within OHPLBJKB_00103 at 111.157 kb on - strand, within OHPLBJKB_00103 at 111.193 kb on + strand, within OHPLBJKB_00103 at 111.235 kb on + strand, within OHPLBJKB_00103 at 111.236 kb on - strand, within OHPLBJKB_00103 at 111.307 kb on - strand, within OHPLBJKB_00103 at 111.307 kb on - strand, within OHPLBJKB_00103 at 111.316 kb on - strand, within OHPLBJKB_00103 at 111.316 kb on - strand, within OHPLBJKB_00103 at 111.316 kb on - strand, within OHPLBJKB_00103 at 111.316 kb on - strand, within OHPLBJKB_00103 at 111.316 kb on - strand, within OHPLBJKB_00103 at 111.373 kb on + strand, within OHPLBJKB_00103 at 111.399 kb on + strand, within OHPLBJKB_00103 at 111.399 kb on + strand, within OHPLBJKB_00103 at 111.399 kb on + strand, within OHPLBJKB_00103 at 111.399 kb on + strand, within OHPLBJKB_00103 at 111.399 kb on + strand, within OHPLBJKB_00103 at 111.400 kb on - strand, within OHPLBJKB_00103 at 111.460 kb on + strand, within OHPLBJKB_00103 at 111.502 kb on + strand, within OHPLBJKB_00103 at 111.502 kb on + strand, within OHPLBJKB_00103 at 111.556 kb on + strand, within OHPLBJKB_00103 at 111.556 kb on + strand, within OHPLBJKB_00103 at 111.556 kb on + strand, within OHPLBJKB_00103 at 111.556 kb on + strand, within OHPLBJKB_00103 at 111.556 kb on + strand, within OHPLBJKB_00103 at 111.556 kb on + strand, within OHPLBJKB_00103 at 111.556 kb on + strand, within OHPLBJKB_00103 at 111.556 kb on + strand, within OHPLBJKB_00103 at 111.556 kb on + strand, within OHPLBJKB_00103 at 111.557 kb on - strand, within OHPLBJKB_00103 at 111.557 kb on - strand, within OHPLBJKB_00103 at 111.757 kb on + strand, within OHPLBJKB_00103 at 111.757 kb on + strand, within OHPLBJKB_00103 at 111.791 kb on - strand, within OHPLBJKB_00103 at 111.791 kb on - strand, within OHPLBJKB_00103 at 111.791 kb on - strand, within OHPLBJKB_00103 at 111.892 kb on + strand, within OHPLBJKB_00103 at 111.894 kb on + strand, within OHPLBJKB_00103 at 111.918 kb on + strand at 111.939 kb on - strand at 111.979 kb on + strand at 111.984 kb on - strand at 112.021 kb on + strand at 112.075 kb on + strand at 112.075 kb on + strand at 112.076 kb on - strand at 112.076 kb on - strand at 112.091 kb on - strand at 112.091 kb on - strand at 112.091 kb on - strand at 112.106 kb on + strand at 112.106 kb on + strand at 112.106 kb on + strand at 112.106 kb on + strand at 112.107 kb on - strand at 112.107 kb on - strand at 112.107 kb on - strand at 112.148 kb on + strand at 112.166 kb on - strand at 112.178 kb on + strand at 112.178 kb on + strand at 112.179 kb on - strand at 112.179 kb on - strand at 112.179 kb on - strand at 112.182 kb on + strand at 112.183 kb on - strand at 112.183 kb on - strand at 112.250 kb on + strand at 112.255 kb on - strand at 112.255 kb on - strand at 112.271 kb on + strand at 112.271 kb on + strand at 112.271 kb on + strand at 112.272 kb on - strand at 112.357 kb on + strand at 112.445 kb on + strand at 112.446 kb on - strand at 112.446 kb on - strand at 112.455 kb on + strand at 112.455 kb on + strand at 112.455 kb on + strand at 112.456 kb on - strand at 112.468 kb on + strand at 112.469 kb on - strand at 112.478 kb on - strand at 112.478 kb on - strand at 112.478 kb on - strand at 112.481 kb on + strand at 112.481 kb on + strand at 112.481 kb on + strand at 112.481 kb on + strand at 112.481 kb on + strand at 112.481 kb on + strand at 112.482 kb on - strand at 112.482 kb on - strand at 112.482 kb on - strand at 112.482 kb on - strand at 112.485 kb on + strand at 112.485 kb on + strand at 112.485 kb on + strand at 112.485 kb on + strand at 112.485 kb on + strand at 112.486 kb on - strand at 112.524 kb on - strand at 112.548 kb on + strand at 112.548 kb on + strand at 112.548 kb on + strand at 112.559 kb on + strand at 112.605 kb on + strand at 112.605 kb on + strand at 112.606 kb on - strand at 112.626 kb on + strand at 112.626 kb on + strand at 112.626 kb on + strand at 112.626 kb on + strand at 112.626 kb on + strand at 112.626 kb on + strand at 112.626 kb on + strand at 112.626 kb on + strand at 112.627 kb on - strand at 112.627 kb on - strand at 112.640 kb on - strand at 112.640 kb on - strand at 112.714 kb on + strand, within OHPLBJKB_00104 at 112.761 kb on + strand, within OHPLBJKB_00104 at 112.798 kb on - strand, within OHPLBJKB_00104 at 112.798 kb on - strand, within OHPLBJKB_00104 at 112.831 kb on + strand, within OHPLBJKB_00104 at 112.966 kb on + strand at 112.967 kb on - strand at 112.987 kb on + strand at 112.987 kb on + strand at 112.987 kb on + strand at 112.987 kb on + strand at 112.987 kb on + strand at 112.987 kb on + strand at 112.987 kb on + strand at 112.988 kb on - strand at 112.988 kb on - strand at 112.988 kb on - strand at 112.988 kb on - strand at 112.988 kb on - strand at 112.988 kb on - strand at 112.988 kb on - strand at 112.988 kb on - strand at 112.988 kb on - strand at 112.991 kb on + strand at 112.991 kb on + strand at 112.999 kb on + strand at 112.999 kb on + strand at 112.999 kb on + strand at 112.999 kb on + strand at 112.999 kb on + strand at 112.999 kb on + strand at 112.999 kb on + strand at 113.000 kb on - strand at 113.016 kb on + strand at 113.017 kb on - strand at 113.017 kb on - strand at 113.017 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Z3 MOI1 remove 109,285 - OHPLBJKB_00102 0.42 -0.1 109,285 - OHPLBJKB_00102 0.42 -1.1 109,285 - OHPLBJKB_00102 0.42 -0.3 109,443 + OHPLBJKB_00102 0.56 -0.1 109,510 + OHPLBJKB_00102 0.62 +0.3 109,665 + OHPLBJKB_00102 0.75 +0.3 109,777 + OHPLBJKB_00102 0.85 +0.3 109,804 + OHPLBJKB_00102 0.87 -0.8 109,804 + OHPLBJKB_00102 0.87 -0.4 109,804 + OHPLBJKB_00102 0.87 +0.3 109,805 - OHPLBJKB_00102 0.88 +0.1 109,805 - OHPLBJKB_00102 0.88 -1.6 109,815 + OHPLBJKB_00102 0.88 -0.3 109,815 + OHPLBJKB_00102 0.88 +0.3 109,815 + OHPLBJKB_00102 0.88 -0.1 109,840 + -1.2 109,950 + +2.3 109,953 + +1.3 110,050 + +0.2 110,068 + -1.5 110,109 - -1.0 110,118 - +0.3 110,179 - -1.9 110,179 - -0.9 110,182 + +0.6 110,183 - +1.3 110,183 - +1.4 110,314 + -2.6 110,315 - +0.6 110,500 - OHPLBJKB_00103 0.17 +2.2 110,500 - OHPLBJKB_00103 0.17 +1.7 110,500 - OHPLBJKB_00103 0.17 +1.3 110,500 - OHPLBJKB_00103 0.17 +0.1 110,618 - OHPLBJKB_00103 0.23 -1.2 110,658 - OHPLBJKB_00103 0.25 +1.7 110,752 + OHPLBJKB_00103 0.30 -0.6 110,752 + OHPLBJKB_00103 0.30 +0.1 110,752 + OHPLBJKB_00103 0.30 +1.0 110,752 + OHPLBJKB_00103 0.30 -0.5 110,752 + OHPLBJKB_00103 0.30 -2.3 110,752 + OHPLBJKB_00103 0.30 +0.4 110,752 + OHPLBJKB_00103 0.30 -0.2 110,753 - OHPLBJKB_00103 0.30 +0.9 110,753 - OHPLBJKB_00103 0.30 -0.5 110,753 - OHPLBJKB_00103 0.30 -3.1 110,851 + OHPLBJKB_00103 0.35 +0.3 110,852 - OHPLBJKB_00103 0.35 -1.7 110,852 - OHPLBJKB_00103 0.35 +0.1 110,852 - OHPLBJKB_00103 0.35 +0.3 110,894 - OHPLBJKB_00103 0.37 -3.0 110,956 + OHPLBJKB_00103 0.41 +0.4 110,956 + OHPLBJKB_00103 0.41 -0.2 110,956 + OHPLBJKB_00103 0.41 -2.7 110,960 + OHPLBJKB_00103 0.41 -1.4 110,961 - OHPLBJKB_00103 0.41 -1.3 111,013 + OHPLBJKB_00103 0.44 +0.1 111,058 + OHPLBJKB_00103 0.46 -1.2 111,097 + OHPLBJKB_00103 0.48 -2.7 111,098 - OHPLBJKB_00103 0.48 -0.2 111,156 + OHPLBJKB_00103 0.51 +0.1 111,156 + OHPLBJKB_00103 0.51 +0.9 111,156 + OHPLBJKB_00103 0.51 -0.5 111,156 + OHPLBJKB_00103 0.51 -1.1 111,156 + OHPLBJKB_00103 0.51 +0.3 111,157 - OHPLBJKB_00103 0.51 -1.1 111,157 - OHPLBJKB_00103 0.51 -1.3 111,157 - OHPLBJKB_00103 0.51 -1.1 111,193 + OHPLBJKB_00103 0.53 -0.7 111,235 + OHPLBJKB_00103 0.55 +1.0 111,236 - OHPLBJKB_00103 0.55 -1.2 111,307 - OHPLBJKB_00103 0.59 -0.8 111,307 - OHPLBJKB_00103 0.59 +0.4 111,316 - OHPLBJKB_00103 0.60 -3.1 111,316 - OHPLBJKB_00103 0.60 +2.4 111,316 - OHPLBJKB_00103 0.60 +0.4 111,316 - OHPLBJKB_00103 0.60 +1.2 111,316 - OHPLBJKB_00103 0.60 +0.6 111,373 + OHPLBJKB_00103 0.62 -0.9 111,399 + OHPLBJKB_00103 0.64 -2.2 111,399 + OHPLBJKB_00103 0.64 -0.8 111,399 + OHPLBJKB_00103 0.64 -1.6 111,399 + OHPLBJKB_00103 0.64 -0.1 111,399 + OHPLBJKB_00103 0.64 +0.4 111,400 - OHPLBJKB_00103 0.64 -1.3 111,460 + OHPLBJKB_00103 0.67 +1.3 111,502 + OHPLBJKB_00103 0.69 -0.9 111,502 + OHPLBJKB_00103 0.69 +1.6 111,556 + OHPLBJKB_00103 0.72 +1.4 111,556 + OHPLBJKB_00103 0.72 +2.3 111,556 + OHPLBJKB_00103 0.72 -2.7 111,556 + OHPLBJKB_00103 0.72 -0.5 111,556 + OHPLBJKB_00103 0.72 -0.6 111,556 + OHPLBJKB_00103 0.72 +1.0 111,556 + OHPLBJKB_00103 0.72 +1.7 111,556 + OHPLBJKB_00103 0.72 +1.4 111,556 + OHPLBJKB_00103 0.72 -0.1 111,557 - OHPLBJKB_00103 0.72 -2.2 111,557 - OHPLBJKB_00103 0.72 +1.5 111,757 + OHPLBJKB_00103 0.83 -0.7 111,757 + OHPLBJKB_00103 0.83 +0.3 111,791 - OHPLBJKB_00103 0.84 -2.2 111,791 - OHPLBJKB_00103 0.84 +1.4 111,791 - OHPLBJKB_00103 0.84 -1.8 111,892 + OHPLBJKB_00103 0.90 -1.0 111,894 + OHPLBJKB_00103 0.90 +0.3 111,918 + -1.4 111,939 - -0.3 111,979 + -1.1 111,984 - +1.3 112,021 + +1.8 112,075 + -2.5 112,075 + +0.5 112,076 - -0.8 112,076 - +0.4 112,091 - -1.4 112,091 - -0.5 112,091 - +0.8 112,106 + -0.7 112,106 + -1.7 112,106 + +0.1 112,106 + +0.8 112,107 - -0.3 112,107 - +0.1 112,107 - +1.3 112,148 + +0.5 112,166 - -1.2 112,178 + +0.6 112,178 + +0.9 112,179 - -1.0 112,179 - -1.0 112,179 - -1.1 112,182 + -0.3 112,183 - -1.4 112,183 - -0.9 112,250 + -0.2 112,255 - -1.3 112,255 - +1.0 112,271 + -2.4 112,271 + +1.6 112,271 + +0.8 112,272 - -2.1 112,357 + +1.5 112,445 + +1.8 112,446 - -0.9 112,446 - +1.1 112,455 + -1.9 112,455 + -2.0 112,455 + -0.8 112,456 - +0.8 112,468 + +0.2 112,469 - +0.1 112,478 - -1.0 112,478 - -0.8 112,478 - +1.1 112,481 + +0.6 112,481 + -1.0 112,481 + -0.3 112,481 + -1.0 112,481 + -0.7 112,481 + +1.0 112,482 - -1.6 112,482 - -0.2 112,482 - -2.2 112,482 - +1.2 112,485 + +2.0 112,485 + -1.6 112,485 + +0.9 112,485 + -1.8 112,485 + -3.5 112,486 - -1.4 112,524 - -0.3 112,548 + +0.5 112,548 + +0.6 112,548 + -0.2 112,559 + +0.9 112,605 + +2.8 112,605 + -0.3 112,606 - -0.9 112,626 + -2.3 112,626 + -0.0 112,626 + -2.1 112,626 + +1.1 112,626 + -0.4 112,626 + -3.0 112,626 + -1.5 112,626 + +0.1 112,627 - +0.6 112,627 - +2.1 112,640 - +2.5 112,640 - +1.4 112,714 + OHPLBJKB_00104 0.24 -0.3 112,761 + OHPLBJKB_00104 0.37 -1.7 112,798 - OHPLBJKB_00104 0.47 -2.5 112,798 - OHPLBJKB_00104 0.47 -2.4 112,831 + OHPLBJKB_00104 0.56 -2.4 112,966 + +1.8 112,967 - +1.5 112,987 + -1.8 112,987 + -2.5 112,987 + -1.2 112,987 + -1.6 112,987 + -0.3 112,987 + +8.3 112,987 + +0.3 112,988 - +1.0 112,988 - +0.2 112,988 - -3.0 112,988 - -2.6 112,988 - -1.5 112,988 - -2.5 112,988 - -1.4 112,988 - +0.6 112,988 - -1.2 112,991 + -0.4 112,991 + -1.0 112,999 + -0.5 112,999 + -1.4 112,999 + -1.8 112,999 + +0.1 112,999 + +0.3 112,999 + -1.2 112,999 + +0.2 113,000 - -1.4 113,016 + -2.8 113,017 - +0.6 113,017 - +5.8 113,017 - +0.9
Or see this region's nucleotide sequence