Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02692

Experiment: BWC1S MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02689 and OHPLBJKB_02690 overlap by 4 nucleotidesOHPLBJKB_02690 and OHPLBJKB_02691 overlap by 4 nucleotidesOHPLBJKB_02691 and OHPLBJKB_02692 overlap by 4 nucleotidesOHPLBJKB_02692 and OHPLBJKB_02693 are separated by 18 nucleotides OHPLBJKB_02689: OHPLBJKB_02689 - hypothetical protein, at 2,803,419 to 2,804,276 _02689 OHPLBJKB_02690: OHPLBJKB_02690 - Hydrogenase-1 operon protein HyaE, at 2,804,273 to 2,804,671 _02690 OHPLBJKB_02691: OHPLBJKB_02691 - Hydrogenase 1 maturation protease, at 2,804,668 to 2,805,255 _02691 OHPLBJKB_02692: OHPLBJKB_02692 - putative Ni/Fe-hydrogenase 1 B-type cytochrome subunit, at 2,805,252 to 2,805,959 _02692 OHPLBJKB_02693: OHPLBJKB_02693 - Hydrogenase-1 large chain, at 2,805,978 to 2,807,771 _02693 Position (kb) 2805 2806Strain fitness (log2 ratio) -2 -1 0 1 2at 2804.322 kb on - strand, within OHPLBJKB_02690at 2804.322 kb on - strand, within OHPLBJKB_02690at 2804.384 kb on + strand, within OHPLBJKB_02690at 2804.385 kb on - strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.467 kb on + strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.468 kb on - strand, within OHPLBJKB_02690at 2804.469 kb on + strand, within OHPLBJKB_02690at 2804.470 kb on - strand, within OHPLBJKB_02690at 2804.470 kb on - strand, within OHPLBJKB_02690at 2804.549 kb on + strand, within OHPLBJKB_02690at 2804.550 kb on - strand, within OHPLBJKB_02690at 2804.550 kb on - strand, within OHPLBJKB_02690at 2804.578 kb on + strand, within OHPLBJKB_02690at 2804.744 kb on + strand, within OHPLBJKB_02691at 2804.745 kb on - strand, within OHPLBJKB_02691at 2804.745 kb on - strand, within OHPLBJKB_02691at 2804.907 kb on + strand, within OHPLBJKB_02691at 2804.907 kb on + strand, within OHPLBJKB_02691at 2804.907 kb on + strand, within OHPLBJKB_02691at 2804.907 kb on + strand, within OHPLBJKB_02691at 2804.908 kb on - strand, within OHPLBJKB_02691at 2804.908 kb on - strand, within OHPLBJKB_02691at 2804.908 kb on - strand, within OHPLBJKB_02691at 2804.908 kb on - strand, within OHPLBJKB_02691at 2805.020 kb on + strand, within OHPLBJKB_02691at 2805.167 kb on + strand, within OHPLBJKB_02691at 2805.167 kb on + strand, within OHPLBJKB_02691at 2805.168 kb on - strand, within OHPLBJKB_02691at 2805.168 kb on - strand, within OHPLBJKB_02691at 2805.270 kb on - strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.273 kb on + strandat 2805.361 kb on + strand, within OHPLBJKB_02692at 2805.361 kb on + strand, within OHPLBJKB_02692at 2805.361 kb on + strand, within OHPLBJKB_02692at 2805.362 kb on - strand, within OHPLBJKB_02692at 2805.362 kb on - strand, within OHPLBJKB_02692at 2805.362 kb on - strand, within OHPLBJKB_02692at 2805.362 kb on - strand, within OHPLBJKB_02692at 2805.362 kb on - strand, within OHPLBJKB_02692at 2805.362 kb on - strand, within OHPLBJKB_02692at 2805.362 kb on - strand, within OHPLBJKB_02692at 2805.362 kb on - strand, within OHPLBJKB_02692at 2805.491 kb on - strand, within OHPLBJKB_02692at 2805.534 kb on - strand, within OHPLBJKB_02692at 2805.584 kb on + strand, within OHPLBJKB_02692at 2805.592 kb on - strand, within OHPLBJKB_02692at 2805.592 kb on - strand, within OHPLBJKB_02692at 2805.592 kb on - strand, within OHPLBJKB_02692at 2805.626 kb on - strand, within OHPLBJKB_02692at 2805.641 kb on - strand, within OHPLBJKB_02692at 2805.665 kb on + strand, within OHPLBJKB_02692at 2805.749 kb on + strand, within OHPLBJKB_02692at 2805.749 kb on + strand, within OHPLBJKB_02692at 2805.788 kb on - strand, within OHPLBJKB_02692at 2805.788 kb on - strand, within OHPLBJKB_02692at 2805.794 kb on + strand, within OHPLBJKB_02692at 2805.796 kb on + strand, within OHPLBJKB_02692at 2805.796 kb on + strand, within OHPLBJKB_02692at 2805.796 kb on + strand, within OHPLBJKB_02692at 2805.796 kb on + strand, within OHPLBJKB_02692at 2805.796 kb on + strand, within OHPLBJKB_02692at 2805.797 kb on - strand, within OHPLBJKB_02692at 2805.797 kb on - strand, within OHPLBJKB_02692at 2805.797 kb on - strand, within OHPLBJKB_02692at 2805.797 kb on - strand, within OHPLBJKB_02692at 2805.797 kb on - strand, within OHPLBJKB_02692at 2805.797 kb on - strand, within OHPLBJKB_02692at 2805.805 kb on + strand, within OHPLBJKB_02692at 2805.805 kb on + strand, within OHPLBJKB_02692at 2805.806 kb on - strand, within OHPLBJKB_02692at 2805.806 kb on - strand, within OHPLBJKB_02692at 2805.806 kb on - strand, within OHPLBJKB_02692at 2805.806 kb on - strand, within OHPLBJKB_02692at 2805.806 kb on - strand, within OHPLBJKB_02692at 2805.806 kb on - strand, within OHPLBJKB_02692at 2805.880 kb on - strand, within OHPLBJKB_02692at 2805.926 kb on - strandat 2805.926 kb on - strandat 2805.926 kb on - strandat 2806.379 kb on + strand, within OHPLBJKB_02693at 2806.380 kb on - strand, within OHPLBJKB_02693at 2806.651 kb on + strand, within OHPLBJKB_02693at 2806.651 kb on + strand, within OHPLBJKB_02693

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Per-strain Table

Position Strand Gene LocusTag Fraction BWC1S MOI1
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2,804,322 - OHPLBJKB_02690 0.12 +0.0
2,804,322 - OHPLBJKB_02690 0.12 +0.2
2,804,384 + OHPLBJKB_02690 0.28 +0.3
2,804,385 - OHPLBJKB_02690 0.28 +1.5
2,804,467 + OHPLBJKB_02690 0.49 +1.6
2,804,467 + OHPLBJKB_02690 0.49 -0.5
2,804,467 + OHPLBJKB_02690 0.49 +1.1
2,804,467 + OHPLBJKB_02690 0.49 +0.3
2,804,467 + OHPLBJKB_02690 0.49 -0.2
2,804,467 + OHPLBJKB_02690 0.49 +0.3
2,804,467 + OHPLBJKB_02690 0.49 -0.7
2,804,467 + OHPLBJKB_02690 0.49 +0.2
2,804,467 + OHPLBJKB_02690 0.49 -0.8
2,804,467 + OHPLBJKB_02690 0.49 -0.9
2,804,467 + OHPLBJKB_02690 0.49 +0.6
2,804,467 + OHPLBJKB_02690 0.49 -1.7
2,804,467 + OHPLBJKB_02690 0.49 +0.4
2,804,467 + OHPLBJKB_02690 0.49 -1.1
2,804,468 - OHPLBJKB_02690 0.49 -0.9
2,804,468 - OHPLBJKB_02690 0.49 +0.1
2,804,468 - OHPLBJKB_02690 0.49 +0.3
2,804,468 - OHPLBJKB_02690 0.49 +1.8
2,804,468 - OHPLBJKB_02690 0.49 -2.1
2,804,468 - OHPLBJKB_02690 0.49 +0.3
2,804,468 - OHPLBJKB_02690 0.49 -1.0
2,804,468 - OHPLBJKB_02690 0.49 +0.7
2,804,468 - OHPLBJKB_02690 0.49 +0.1
2,804,468 - OHPLBJKB_02690 0.49 -0.8
2,804,468 - OHPLBJKB_02690 0.49 +1.1
2,804,468 - OHPLBJKB_02690 0.49 -0.4
2,804,468 - OHPLBJKB_02690 0.49 +0.9
2,804,468 - OHPLBJKB_02690 0.49 -0.8
2,804,469 + OHPLBJKB_02690 0.49 -1.2
2,804,470 - OHPLBJKB_02690 0.49 +0.8
2,804,470 - OHPLBJKB_02690 0.49 +1.1
2,804,549 + OHPLBJKB_02690 0.69 -0.4
2,804,550 - OHPLBJKB_02690 0.69 -0.3
2,804,550 - OHPLBJKB_02690 0.69 -1.7
2,804,578 + OHPLBJKB_02690 0.76 -2.0
2,804,744 + OHPLBJKB_02691 0.13 -1.1
2,804,745 - OHPLBJKB_02691 0.13 -0.7
2,804,745 - OHPLBJKB_02691 0.13 -0.2
2,804,907 + OHPLBJKB_02691 0.41 +1.2
2,804,907 + OHPLBJKB_02691 0.41 -2.0
2,804,907 + OHPLBJKB_02691 0.41 -0.6
2,804,907 + OHPLBJKB_02691 0.41 -0.4
2,804,908 - OHPLBJKB_02691 0.41 -0.7
2,804,908 - OHPLBJKB_02691 0.41 -0.4
2,804,908 - OHPLBJKB_02691 0.41 -1.4
2,804,908 - OHPLBJKB_02691 0.41 +0.3
2,805,020 + OHPLBJKB_02691 0.60 +0.9
2,805,167 + OHPLBJKB_02691 0.85 +0.1
2,805,167 + OHPLBJKB_02691 0.85 +1.1
2,805,168 - OHPLBJKB_02691 0.85 +0.3
2,805,168 - OHPLBJKB_02691 0.85 +0.1
2,805,270 - +0.7
2,805,273 + +1.7
2,805,273 + -0.9
2,805,273 + +0.1
2,805,273 + +0.2
2,805,361 + OHPLBJKB_02692 0.15 +0.3
2,805,361 + OHPLBJKB_02692 0.15 -0.3
2,805,361 + OHPLBJKB_02692 0.15 +0.8
2,805,362 - OHPLBJKB_02692 0.16 -0.6
2,805,362 - OHPLBJKB_02692 0.16 -1.9
2,805,362 - OHPLBJKB_02692 0.16 -1.0
2,805,362 - OHPLBJKB_02692 0.16 -0.0
2,805,362 - OHPLBJKB_02692 0.16 +0.9
2,805,362 - OHPLBJKB_02692 0.16 -0.7
2,805,362 - OHPLBJKB_02692 0.16 +1.1
2,805,362 - OHPLBJKB_02692 0.16 -0.2
2,805,491 - OHPLBJKB_02692 0.34 +1.4
2,805,534 - OHPLBJKB_02692 0.40 +1.1
2,805,584 + OHPLBJKB_02692 0.47 +0.1
2,805,592 - OHPLBJKB_02692 0.48 +0.8
2,805,592 - OHPLBJKB_02692 0.48 +1.6
2,805,592 - OHPLBJKB_02692 0.48 +1.7
2,805,626 - OHPLBJKB_02692 0.53 +0.8
2,805,641 - OHPLBJKB_02692 0.55 -0.6
2,805,665 + OHPLBJKB_02692 0.58 -0.4
2,805,749 + OHPLBJKB_02692 0.70 -0.2
2,805,749 + OHPLBJKB_02692 0.70 -1.0
2,805,788 - OHPLBJKB_02692 0.76 +1.0
2,805,788 - OHPLBJKB_02692 0.76 -0.2
2,805,794 + OHPLBJKB_02692 0.77 +1.7
2,805,796 + OHPLBJKB_02692 0.77 +0.4
2,805,796 + OHPLBJKB_02692 0.77 +0.8
2,805,796 + OHPLBJKB_02692 0.77 -0.0
2,805,796 + OHPLBJKB_02692 0.77 +1.9
2,805,796 + OHPLBJKB_02692 0.77 -1.6
2,805,797 - OHPLBJKB_02692 0.77 -0.3
2,805,797 - OHPLBJKB_02692 0.77 +1.3
2,805,797 - OHPLBJKB_02692 0.77 -0.4
2,805,797 - OHPLBJKB_02692 0.77 +1.2
2,805,797 - OHPLBJKB_02692 0.77 -0.2
2,805,797 - OHPLBJKB_02692 0.77 +1.8
2,805,805 + OHPLBJKB_02692 0.78 +0.6
2,805,805 + OHPLBJKB_02692 0.78 +0.6
2,805,806 - OHPLBJKB_02692 0.78 -0.4
2,805,806 - OHPLBJKB_02692 0.78 -1.0
2,805,806 - OHPLBJKB_02692 0.78 +0.8
2,805,806 - OHPLBJKB_02692 0.78 -0.5
2,805,806 - OHPLBJKB_02692 0.78 -0.6
2,805,806 - OHPLBJKB_02692 0.78 +0.2
2,805,880 - OHPLBJKB_02692 0.89 -1.0
2,805,926 - +0.1
2,805,926 - +0.3
2,805,926 - +1.6
2,806,379 + OHPLBJKB_02693 0.22 -0.0
2,806,380 - OHPLBJKB_02693 0.22 -1.4
2,806,651 + OHPLBJKB_02693 0.38 +0.6
2,806,651 + OHPLBJKB_02693 0.38 +1.0

Or see this region's nucleotide sequence