Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01668

Experiment: BWC1S MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01667 and OHPLBJKB_01668 are separated by 5 nucleotidesOHPLBJKB_01668 and OHPLBJKB_01669 are separated by 2 nucleotides OHPLBJKB_01667: OHPLBJKB_01667 - Phosphomannomutase/phosphoglucomutase, at 1,757,043 to 1,758,425 _01667 OHPLBJKB_01668: OHPLBJKB_01668 - hypothetical protein, at 1,758,431 to 1,759,216 _01668 OHPLBJKB_01669: OHPLBJKB_01669 - Vitamin B12 import ATP-binding protein BtuD, at 1,759,219 to 1,760,514 _01669 Position (kb) 1758 1759 1760Strain fitness (log2 ratio) -2 -1 0 1 2at 1757.835 kb on + strand, within OHPLBJKB_01667at 1757.838 kb on + strand, within OHPLBJKB_01667at 1757.838 kb on + strand, within OHPLBJKB_01667at 1757.838 kb on + strand, within OHPLBJKB_01667at 1757.839 kb on - strand, within OHPLBJKB_01667at 1757.839 kb on - strand, within OHPLBJKB_01667at 1757.839 kb on - strand, within OHPLBJKB_01667at 1757.839 kb on - strand, within OHPLBJKB_01667at 1757.839 kb on - strand, within OHPLBJKB_01667at 1757.922 kb on - strand, within OHPLBJKB_01667at 1757.922 kb on - strand, within OHPLBJKB_01667at 1758.045 kb on + strand, within OHPLBJKB_01667at 1758.046 kb on - strand, within OHPLBJKB_01667at 1758.286 kb on - strand, within OHPLBJKB_01667at 1758.317 kb on + strandat 1758.318 kb on - strandat 1758.407 kb on - strandat 1758.446 kb on + strandat 1758.446 kb on + strandat 1758.447 kb on - strandat 1758.447 kb on - strandat 1758.466 kb on + strandat 1758.467 kb on - strandat 1758.565 kb on + strand, within OHPLBJKB_01668at 1758.565 kb on + strand, within OHPLBJKB_01668at 1758.565 kb on + strand, within OHPLBJKB_01668at 1758.565 kb on + strand, within OHPLBJKB_01668at 1758.566 kb on - strand, within OHPLBJKB_01668at 1758.566 kb on - strand, within OHPLBJKB_01668at 1758.566 kb on - strand, within OHPLBJKB_01668at 1758.566 kb on - strand, within OHPLBJKB_01668at 1758.566 kb on - strand, within OHPLBJKB_01668at 1758.566 kb on - strand, within OHPLBJKB_01668at 1758.566 kb on - strand, within OHPLBJKB_01668at 1758.626 kb on + strand, within OHPLBJKB_01668at 1758.627 kb on - strand, within OHPLBJKB_01668at 1758.635 kb on + strand, within OHPLBJKB_01668at 1758.635 kb on + strand, within OHPLBJKB_01668at 1758.635 kb on + strand, within OHPLBJKB_01668at 1758.635 kb on + strand, within OHPLBJKB_01668at 1758.635 kb on + strand, within OHPLBJKB_01668at 1758.636 kb on - strand, within OHPLBJKB_01668at 1758.636 kb on - strand, within OHPLBJKB_01668at 1758.636 kb on - strand, within OHPLBJKB_01668at 1758.636 kb on - strand, within OHPLBJKB_01668at 1758.636 kb on - strand, within OHPLBJKB_01668at 1758.636 kb on - strand, within OHPLBJKB_01668at 1758.636 kb on - strand, within OHPLBJKB_01668at 1758.636 kb on - strand, within OHPLBJKB_01668at 1758.655 kb on - strand, within OHPLBJKB_01668at 1758.655 kb on - strand, within OHPLBJKB_01668at 1758.719 kb on - strand, within OHPLBJKB_01668at 1758.719 kb on - strand, within OHPLBJKB_01668at 1758.724 kb on + strand, within OHPLBJKB_01668at 1758.781 kb on + strand, within OHPLBJKB_01668at 1758.781 kb on + strand, within OHPLBJKB_01668at 1758.781 kb on + strand, within OHPLBJKB_01668at 1758.782 kb on - strand, within OHPLBJKB_01668at 1758.924 kb on + strand, within OHPLBJKB_01668at 1758.965 kb on - strand, within OHPLBJKB_01668at 1759.004 kb on + strand, within OHPLBJKB_01668at 1759.005 kb on - strand, within OHPLBJKB_01668at 1759.009 kb on - strand, within OHPLBJKB_01668at 1759.049 kb on + strand, within OHPLBJKB_01668at 1759.049 kb on + strand, within OHPLBJKB_01668at 1759.052 kb on - strand, within OHPLBJKB_01668at 1759.112 kb on - strand, within OHPLBJKB_01668at 1759.214 kb on + strandat 1759.252 kb on + strandat 1759.252 kb on + strandat 1759.253 kb on - strandat 1759.254 kb on + strandat 1759.254 kb on + strandat 1759.255 kb on - strandat 1759.255 kb on - strandat 1759.255 kb on - strandat 1759.258 kb on + strandat 1759.259 kb on - strandat 1759.259 kb on - strandat 1759.259 kb on - strandat 1759.269 kb on + strandat 1759.309 kb on - strandat 1759.404 kb on + strand, within OHPLBJKB_01669at 1759.540 kb on + strand, within OHPLBJKB_01669at 1759.540 kb on + strand, within OHPLBJKB_01669at 1759.540 kb on + strand, within OHPLBJKB_01669at 1759.540 kb on + strand, within OHPLBJKB_01669at 1759.540 kb on + strand, within OHPLBJKB_01669at 1759.540 kb on + strand, within OHPLBJKB_01669at 1759.540 kb on + strand, within OHPLBJKB_01669at 1759.540 kb on + strand, within OHPLBJKB_01669at 1759.541 kb on - strand, within OHPLBJKB_01669at 1759.541 kb on - strand, within OHPLBJKB_01669at 1759.541 kb on - strand, within OHPLBJKB_01669at 1759.542 kb on + strand, within OHPLBJKB_01669at 1759.542 kb on + strand, within OHPLBJKB_01669at 1759.542 kb on + strand, within OHPLBJKB_01669at 1759.542 kb on + strand, within OHPLBJKB_01669at 1759.542 kb on + strand, within OHPLBJKB_01669at 1759.543 kb on - strand, within OHPLBJKB_01669at 1759.543 kb on - strand, within OHPLBJKB_01669at 1759.543 kb on - strand, within OHPLBJKB_01669at 1759.543 kb on - strand, within OHPLBJKB_01669at 1759.543 kb on - strand, within OHPLBJKB_01669at 1759.543 kb on - strand, within OHPLBJKB_01669at 1759.543 kb on - strand, within OHPLBJKB_01669at 1759.627 kb on + strand, within OHPLBJKB_01669at 1759.644 kb on - strand, within OHPLBJKB_01669at 1759.651 kb on + strand, within OHPLBJKB_01669at 1759.651 kb on + strand, within OHPLBJKB_01669at 1759.652 kb on - strand, within OHPLBJKB_01669at 1759.769 kb on - strand, within OHPLBJKB_01669at 1759.769 kb on - strand, within OHPLBJKB_01669at 1759.789 kb on - strand, within OHPLBJKB_01669at 1759.881 kb on + strand, within OHPLBJKB_01669at 1759.881 kb on + strand, within OHPLBJKB_01669at 1759.888 kb on - strand, within OHPLBJKB_01669at 1760.035 kb on + strand, within OHPLBJKB_01669at 1760.036 kb on - strand, within OHPLBJKB_01669at 1760.036 kb on - strand, within OHPLBJKB_01669

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Per-strain Table

Position Strand Gene LocusTag Fraction BWC1S MOI1
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1,757,835 + OHPLBJKB_01667 0.57 -0.7
1,757,838 + OHPLBJKB_01667 0.57 -2.3
1,757,838 + OHPLBJKB_01667 0.57 +1.7
1,757,838 + OHPLBJKB_01667 0.57 -1.8
1,757,839 - OHPLBJKB_01667 0.58 +0.3
1,757,839 - OHPLBJKB_01667 0.58 -0.4
1,757,839 - OHPLBJKB_01667 0.58 +0.6
1,757,839 - OHPLBJKB_01667 0.58 +0.3
1,757,839 - OHPLBJKB_01667 0.58 +0.8
1,757,922 - OHPLBJKB_01667 0.64 -1.3
1,757,922 - OHPLBJKB_01667 0.64 +0.1
1,758,045 + OHPLBJKB_01667 0.72 -0.6
1,758,046 - OHPLBJKB_01667 0.73 +0.1
1,758,286 - OHPLBJKB_01667 0.90 +1.4
1,758,317 + -0.0
1,758,318 - +0.3
1,758,407 - +0.5
1,758,446 + +0.0
1,758,446 + +0.0
1,758,447 - +1.0
1,758,447 - -0.3
1,758,466 + +0.0
1,758,467 - +1.5
1,758,565 + OHPLBJKB_01668 0.17 -0.9
1,758,565 + OHPLBJKB_01668 0.17 +0.0
1,758,565 + OHPLBJKB_01668 0.17 -0.5
1,758,565 + OHPLBJKB_01668 0.17 +0.5
1,758,566 - OHPLBJKB_01668 0.17 +0.6
1,758,566 - OHPLBJKB_01668 0.17 -0.1
1,758,566 - OHPLBJKB_01668 0.17 -1.3
1,758,566 - OHPLBJKB_01668 0.17 -0.4
1,758,566 - OHPLBJKB_01668 0.17 -0.5
1,758,566 - OHPLBJKB_01668 0.17 -0.1
1,758,566 - OHPLBJKB_01668 0.17 -0.8
1,758,626 + OHPLBJKB_01668 0.25 +0.5
1,758,627 - OHPLBJKB_01668 0.25 +0.4
1,758,635 + OHPLBJKB_01668 0.26 -0.1
1,758,635 + OHPLBJKB_01668 0.26 -0.7
1,758,635 + OHPLBJKB_01668 0.26 +0.5
1,758,635 + OHPLBJKB_01668 0.26 -0.8
1,758,635 + OHPLBJKB_01668 0.26 -0.5
1,758,636 - OHPLBJKB_01668 0.26 +0.5
1,758,636 - OHPLBJKB_01668 0.26 +0.9
1,758,636 - OHPLBJKB_01668 0.26 -2.2
1,758,636 - OHPLBJKB_01668 0.26 -1.0
1,758,636 - OHPLBJKB_01668 0.26 +2.0
1,758,636 - OHPLBJKB_01668 0.26 -0.2
1,758,636 - OHPLBJKB_01668 0.26 +0.3
1,758,636 - OHPLBJKB_01668 0.26 -0.3
1,758,655 - OHPLBJKB_01668 0.28 +0.4
1,758,655 - OHPLBJKB_01668 0.28 -0.1
1,758,719 - OHPLBJKB_01668 0.37 +0.0
1,758,719 - OHPLBJKB_01668 0.37 -0.3
1,758,724 + OHPLBJKB_01668 0.37 -0.5
1,758,781 + OHPLBJKB_01668 0.45 +0.7
1,758,781 + OHPLBJKB_01668 0.45 -0.3
1,758,781 + OHPLBJKB_01668 0.45 +0.2
1,758,782 - OHPLBJKB_01668 0.45 +0.7
1,758,924 + OHPLBJKB_01668 0.63 +0.2
1,758,965 - OHPLBJKB_01668 0.68 +0.1
1,759,004 + OHPLBJKB_01668 0.73 -0.7
1,759,005 - OHPLBJKB_01668 0.73 +1.2
1,759,009 - OHPLBJKB_01668 0.74 -0.5
1,759,049 + OHPLBJKB_01668 0.79 -0.5
1,759,049 + OHPLBJKB_01668 0.79 +0.0
1,759,052 - OHPLBJKB_01668 0.79 +0.3
1,759,112 - OHPLBJKB_01668 0.87 -1.0
1,759,214 + +1.0
1,759,252 + -0.3
1,759,252 + +0.7
1,759,253 - -1.5
1,759,254 + +0.7
1,759,254 + +0.7
1,759,255 - +0.2
1,759,255 - +0.5
1,759,255 - +0.5
1,759,258 + -1.9
1,759,259 - -0.9
1,759,259 - +0.9
1,759,259 - +0.0
1,759,269 + -0.1
1,759,309 - -0.9
1,759,404 + OHPLBJKB_01669 0.14 -0.3
1,759,540 + OHPLBJKB_01669 0.25 -0.0
1,759,540 + OHPLBJKB_01669 0.25 -1.3
1,759,540 + OHPLBJKB_01669 0.25 -1.0
1,759,540 + OHPLBJKB_01669 0.25 +0.2
1,759,540 + OHPLBJKB_01669 0.25 -0.7
1,759,540 + OHPLBJKB_01669 0.25 +0.2
1,759,540 + OHPLBJKB_01669 0.25 -2.2
1,759,540 + OHPLBJKB_01669 0.25 -1.0
1,759,541 - OHPLBJKB_01669 0.25 -0.4
1,759,541 - OHPLBJKB_01669 0.25 -0.5
1,759,541 - OHPLBJKB_01669 0.25 -1.2
1,759,542 + OHPLBJKB_01669 0.25 -0.1
1,759,542 + OHPLBJKB_01669 0.25 +0.7
1,759,542 + OHPLBJKB_01669 0.25 -1.5
1,759,542 + OHPLBJKB_01669 0.25 -0.1
1,759,542 + OHPLBJKB_01669 0.25 -0.4
1,759,543 - OHPLBJKB_01669 0.25 +2.1
1,759,543 - OHPLBJKB_01669 0.25 -0.8
1,759,543 - OHPLBJKB_01669 0.25 -0.1
1,759,543 - OHPLBJKB_01669 0.25 -2.3
1,759,543 - OHPLBJKB_01669 0.25 -1.8
1,759,543 - OHPLBJKB_01669 0.25 -0.9
1,759,543 - OHPLBJKB_01669 0.25 +0.1
1,759,627 + OHPLBJKB_01669 0.31 +0.2
1,759,644 - OHPLBJKB_01669 0.33 +0.0
1,759,651 + OHPLBJKB_01669 0.33 +0.2
1,759,651 + OHPLBJKB_01669 0.33 -1.8
1,759,652 - OHPLBJKB_01669 0.33 -0.3
1,759,769 - OHPLBJKB_01669 0.42 +0.5
1,759,769 - OHPLBJKB_01669 0.42 +2.0
1,759,789 - OHPLBJKB_01669 0.44 +0.9
1,759,881 + OHPLBJKB_01669 0.51 +2.0
1,759,881 + OHPLBJKB_01669 0.51 +1.5
1,759,888 - OHPLBJKB_01669 0.52 +0.4
1,760,035 + OHPLBJKB_01669 0.63 -1.1
1,760,036 - OHPLBJKB_01669 0.63 +0.7
1,760,036 - OHPLBJKB_01669 0.63 +0.5

Or see this region's nucleotide sequence