Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01179

Experiment: BWC1S MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01178 and OHPLBJKB_01179 are separated by 240 nucleotidesOHPLBJKB_01179 and OHPLBJKB_01180 are separated by 27 nucleotidesOHPLBJKB_01180 and OHPLBJKB_01181 are separated by 16 nucleotidesOHPLBJKB_01181 and OHPLBJKB_01182 are separated by 95 nucleotides OHPLBJKB_01178: OHPLBJKB_01178 - HTH-type transcriptional regulator IscR, at 1,210,847 to 1,211,335 _01178 OHPLBJKB_01179: OHPLBJKB_01179 - Cysteine desulfurase IscS, at 1,211,576 to 1,212,790 _01179 OHPLBJKB_01180: OHPLBJKB_01180 - Iron-sulfur cluster assembly scaffold protein IscU, at 1,212,818 to 1,213,204 _01180 OHPLBJKB_01181: OHPLBJKB_01181 - Iron-binding protein IscA, at 1,213,221 to 1,213,544 _01181 OHPLBJKB_01182: OHPLBJKB_01182 - Co-chaperone protein HscB, at 1,213,640 to 1,214,155 _01182 Position (kb) 1211 1212 1213Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1210.611 kb on + strandat 1210.621 kb on - strandat 1210.621 kb on - strandat 1210.627 kb on + strandat 1210.677 kb on - strandat 1210.724 kb on - strandat 1210.800 kb on + strandat 1210.861 kb on + strandat 1210.871 kb on + strandat 1210.967 kb on + strand, within OHPLBJKB_01178at 1211.019 kb on + strand, within OHPLBJKB_01178at 1211.019 kb on + strand, within OHPLBJKB_01178at 1211.082 kb on + strand, within OHPLBJKB_01178at 1211.086 kb on + strand, within OHPLBJKB_01178at 1211.086 kb on + strand, within OHPLBJKB_01178at 1211.106 kb on + strand, within OHPLBJKB_01178at 1211.106 kb on + strand, within OHPLBJKB_01178at 1211.106 kb on + strand, within OHPLBJKB_01178at 1211.218 kb on + strand, within OHPLBJKB_01178at 1211.218 kb on + strand, within OHPLBJKB_01178at 1211.218 kb on + strand, within OHPLBJKB_01178at 1211.218 kb on + strand, within OHPLBJKB_01178at 1211.218 kb on + strand, within OHPLBJKB_01178at 1211.218 kb on + strand, within OHPLBJKB_01178at 1211.218 kb on + strand, within OHPLBJKB_01178at 1211.218 kb on + strand, within OHPLBJKB_01178at 1211.218 kb on + strand, within OHPLBJKB_01178at 1211.301 kb on + strandat 1211.301 kb on + strandat 1211.320 kb on + strandat 1211.320 kb on + strandat 1211.378 kb on + strandat 1211.378 kb on + strandat 1211.395 kb on + strandat 1211.395 kb on + strandat 1211.395 kb on + strandat 1211.395 kb on + strandat 1211.395 kb on + strandat 1211.395 kb on + strandat 1211.395 kb on + strandat 1211.395 kb on + strandat 1211.395 kb on + strandat 1211.399 kb on + strandat 1211.399 kb on + strandat 1211.399 kb on + strandat 1211.399 kb on + strandat 1211.399 kb on + strandat 1211.403 kb on + strandat 1211.403 kb on + strandat 1211.403 kb on + strandat 1211.403 kb on + strandat 1211.403 kb on + strandat 1211.403 kb on + strandat 1211.459 kb on + strandat 1211.473 kb on + strandat 1211.473 kb on + strandat 1211.473 kb on + strandat 1211.506 kb on + strandat 1211.518 kb on + strandat 1211.518 kb on + strandat 1211.558 kb on + strandat 1212.743 kb on + strandat 1213.180 kb on + strandat 1213.180 kb on + strandat 1213.202 kb on + strandat 1213.202 kb on + strandat 1213.258 kb on + strand, within OHPLBJKB_01181at 1213.338 kb on + strand, within OHPLBJKB_01181at 1213.484 kb on + strand, within OHPLBJKB_01181

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Per-strain Table

Position Strand Gene LocusTag Fraction BWC1S MOI1
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1,210,611 + -2.1
1,210,621 - -1.7
1,210,621 - -0.5
1,210,627 + +0.1
1,210,677 - +0.8
1,210,724 - +1.8
1,210,800 + -1.3
1,210,861 + -2.1
1,210,871 + -1.4
1,210,967 + OHPLBJKB_01178 0.25 -0.3
1,211,019 + OHPLBJKB_01178 0.35 -0.2
1,211,019 + OHPLBJKB_01178 0.35 -2.0
1,211,082 + OHPLBJKB_01178 0.48 -2.3
1,211,086 + OHPLBJKB_01178 0.49 -1.7
1,211,086 + OHPLBJKB_01178 0.49 -1.6
1,211,106 + OHPLBJKB_01178 0.53 -1.5
1,211,106 + OHPLBJKB_01178 0.53 -3.4
1,211,106 + OHPLBJKB_01178 0.53 -1.0
1,211,218 + OHPLBJKB_01178 0.76 -2.3
1,211,218 + OHPLBJKB_01178 0.76 -2.3
1,211,218 + OHPLBJKB_01178 0.76 -1.8
1,211,218 + OHPLBJKB_01178 0.76 -1.6
1,211,218 + OHPLBJKB_01178 0.76 -1.7
1,211,218 + OHPLBJKB_01178 0.76 -1.6
1,211,218 + OHPLBJKB_01178 0.76 -1.2
1,211,218 + OHPLBJKB_01178 0.76 -1.9
1,211,218 + OHPLBJKB_01178 0.76 -1.8
1,211,301 + +2.6
1,211,301 + +0.8
1,211,320 + +0.5
1,211,320 + +0.6
1,211,378 + -0.3
1,211,378 + -0.6
1,211,395 + +0.2
1,211,395 + +2.0
1,211,395 + -0.0
1,211,395 + -0.8
1,211,395 + -0.6
1,211,395 + -0.9
1,211,395 + -0.9
1,211,395 + -1.2
1,211,395 + -1.1
1,211,399 + -0.2
1,211,399 + -2.4
1,211,399 + +2.8
1,211,399 + -3.4
1,211,399 + -0.5
1,211,403 + -0.5
1,211,403 + -2.1
1,211,403 + -2.0
1,211,403 + -1.1
1,211,403 + -0.8
1,211,403 + +0.4
1,211,459 + -1.0
1,211,473 + +0.5
1,211,473 + +1.6
1,211,473 + +0.8
1,211,506 + -1.7
1,211,518 + +0.6
1,211,518 + +0.2
1,211,558 + +0.4
1,212,743 + +0.8
1,213,180 + -0.0
1,213,180 + -0.6
1,213,202 + -0.7
1,213,202 + +0.6
1,213,258 + OHPLBJKB_01181 0.11 +0.6
1,213,338 + OHPLBJKB_01181 0.36 +1.2
1,213,484 + OHPLBJKB_01181 0.81 -0.0

Or see this region's nucleotide sequence