Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00229

Experiment: BWC1S MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00227 and OHPLBJKB_00228 are separated by 110 nucleotidesOHPLBJKB_00228 and OHPLBJKB_00229 are separated by 54 nucleotidesOHPLBJKB_00229 and OHPLBJKB_00230 are separated by 98 nucleotides OHPLBJKB_00227: OHPLBJKB_00227 - Nickel-binding periplasmic protein, at 249,390 to 250,964 _00227 OHPLBJKB_00228: OHPLBJKB_00228 - hypothetical protein, at 251,075 to 251,662 _00228 OHPLBJKB_00229: OHPLBJKB_00229 - Putative transport protein YhhT, at 251,717 to 252,766 _00229 OHPLBJKB_00230: OHPLBJKB_00230 - putative MFS-type transporter YhhS, at 252,865 to 254,115 _00230 Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 250.718 kb on + strand, within OHPLBJKB_00227at 250.780 kb on + strand, within OHPLBJKB_00227at 250.798 kb on + strand, within OHPLBJKB_00227at 250.834 kb on + strandat 250.911 kb on - strandat 250.911 kb on - strandat 250.938 kb on + strandat 250.939 kb on - strandat 250.939 kb on - strandat 250.968 kb on - strandat 250.981 kb on + strandat 250.981 kb on + strandat 250.986 kb on + strandat 250.986 kb on + strandat 250.987 kb on - strandat 250.987 kb on - strandat 250.987 kb on - strandat 250.999 kb on + strandat 251.000 kb on - strandat 251.003 kb on + strandat 251.014 kb on + strandat 251.019 kb on - strandat 251.034 kb on + strandat 251.051 kb on + strandat 251.051 kb on + strandat 251.051 kb on + strandat 251.052 kb on - strandat 251.052 kb on - strandat 251.052 kb on - strandat 251.052 kb on - strandat 251.052 kb on - strandat 251.052 kb on - strandat 251.119 kb on + strandat 251.119 kb on + strandat 251.119 kb on + strandat 251.119 kb on + strandat 251.120 kb on - strandat 251.120 kb on - strandat 251.193 kb on + strand, within OHPLBJKB_00228at 251.194 kb on - strand, within OHPLBJKB_00228at 251.194 kb on - strand, within OHPLBJKB_00228at 251.194 kb on - strand, within OHPLBJKB_00228at 251.450 kb on + strand, within OHPLBJKB_00228at 251.450 kb on + strand, within OHPLBJKB_00228at 251.451 kb on - strand, within OHPLBJKB_00228at 251.451 kb on - strand, within OHPLBJKB_00228at 251.451 kb on - strand, within OHPLBJKB_00228at 251.451 kb on - strand, within OHPLBJKB_00228at 251.451 kb on - strand, within OHPLBJKB_00228at 251.451 kb on - strand, within OHPLBJKB_00228at 251.451 kb on - strand, within OHPLBJKB_00228at 251.505 kb on + strand, within OHPLBJKB_00228at 251.506 kb on - strand, within OHPLBJKB_00228at 251.506 kb on - strand, within OHPLBJKB_00228at 251.506 kb on - strand, within OHPLBJKB_00228at 251.506 kb on - strand, within OHPLBJKB_00228at 251.506 kb on - strand, within OHPLBJKB_00228at 251.652 kb on - strandat 251.658 kb on + strandat 251.658 kb on + strandat 251.659 kb on - strandat 251.659 kb on - strandat 251.662 kb on + strandat 251.662 kb on + strandat 251.663 kb on - strandat 251.663 kb on - strandat 251.704 kb on - strandat 251.704 kb on - strandat 251.803 kb on + strandat 251.831 kb on + strand, within OHPLBJKB_00229at 251.831 kb on + strand, within OHPLBJKB_00229at 251.831 kb on + strand, within OHPLBJKB_00229at 251.832 kb on - strand, within OHPLBJKB_00229at 251.832 kb on - strand, within OHPLBJKB_00229at 251.868 kb on - strand, within OHPLBJKB_00229at 251.931 kb on - strand, within OHPLBJKB_00229at 251.950 kb on + strand, within OHPLBJKB_00229at 251.951 kb on - strand, within OHPLBJKB_00229at 251.961 kb on - strand, within OHPLBJKB_00229at 251.983 kb on + strand, within OHPLBJKB_00229at 251.983 kb on + strand, within OHPLBJKB_00229at 251.983 kb on + strand, within OHPLBJKB_00229at 251.983 kb on + strand, within OHPLBJKB_00229at 251.984 kb on - strand, within OHPLBJKB_00229at 251.992 kb on - strand, within OHPLBJKB_00229at 252.063 kb on + strand, within OHPLBJKB_00229at 252.063 kb on + strand, within OHPLBJKB_00229at 252.063 kb on + strand, within OHPLBJKB_00229at 252.063 kb on + strand, within OHPLBJKB_00229at 252.063 kb on + strand, within OHPLBJKB_00229at 252.064 kb on - strand, within OHPLBJKB_00229at 252.064 kb on - strand, within OHPLBJKB_00229at 252.064 kb on - strand, within OHPLBJKB_00229at 252.064 kb on - strand, within OHPLBJKB_00229at 252.064 kb on - strand, within OHPLBJKB_00229at 252.064 kb on - strand, within OHPLBJKB_00229at 252.064 kb on - strand, within OHPLBJKB_00229at 252.181 kb on - strand, within OHPLBJKB_00229at 252.196 kb on + strand, within OHPLBJKB_00229at 252.197 kb on - strand, within OHPLBJKB_00229at 252.293 kb on + strand, within OHPLBJKB_00229at 252.413 kb on - strand, within OHPLBJKB_00229at 252.413 kb on - strand, within OHPLBJKB_00229at 252.413 kb on - strand, within OHPLBJKB_00229at 252.413 kb on - strand, within OHPLBJKB_00229at 252.413 kb on - strand, within OHPLBJKB_00229at 252.413 kb on - strand, within OHPLBJKB_00229at 252.413 kb on - strand, within OHPLBJKB_00229at 252.421 kb on + strand, within OHPLBJKB_00229at 252.422 kb on - strand, within OHPLBJKB_00229at 252.475 kb on + strand, within OHPLBJKB_00229at 252.476 kb on - strand, within OHPLBJKB_00229at 252.490 kb on + strand, within OHPLBJKB_00229at 252.491 kb on - strand, within OHPLBJKB_00229at 252.491 kb on - strand, within OHPLBJKB_00229at 252.491 kb on - strand, within OHPLBJKB_00229at 252.590 kb on + strand, within OHPLBJKB_00229at 252.590 kb on + strand, within OHPLBJKB_00229at 252.591 kb on - strand, within OHPLBJKB_00229at 252.591 kb on - strand, within OHPLBJKB_00229at 252.653 kb on + strand, within OHPLBJKB_00229at 252.704 kb on + strandat 252.705 kb on - strandat 252.793 kb on + strandat 252.794 kb on - strandat 252.794 kb on - strandat 252.799 kb on + strandat 252.820 kb on + strandat 252.821 kb on - strandat 252.821 kb on - strandat 252.833 kb on - strandat 252.833 kb on - strandat 252.927 kb on - strandat 252.960 kb on + strandat 252.960 kb on + strandat 252.960 kb on + strandat 252.963 kb on - strandat 252.973 kb on - strandat 253.013 kb on + strand, within OHPLBJKB_00230at 253.013 kb on + strand, within OHPLBJKB_00230at 253.014 kb on - strand, within OHPLBJKB_00230at 253.024 kb on + strand, within OHPLBJKB_00230at 253.024 kb on + strand, within OHPLBJKB_00230at 253.025 kb on - strand, within OHPLBJKB_00230at 253.025 kb on - strand, within OHPLBJKB_00230at 253.085 kb on - strand, within OHPLBJKB_00230at 253.166 kb on + strand, within OHPLBJKB_00230at 253.242 kb on - strand, within OHPLBJKB_00230at 253.244 kb on + strand, within OHPLBJKB_00230at 253.244 kb on + strand, within OHPLBJKB_00230at 253.244 kb on + strand, within OHPLBJKB_00230at 253.244 kb on + strand, within OHPLBJKB_00230at 253.244 kb on + strand, within OHPLBJKB_00230at 253.244 kb on + strand, within OHPLBJKB_00230at 253.245 kb on - strand, within OHPLBJKB_00230at 253.245 kb on - strand, within OHPLBJKB_00230at 253.245 kb on - strand, within OHPLBJKB_00230at 253.375 kb on + strand, within OHPLBJKB_00230at 253.418 kb on - strand, within OHPLBJKB_00230at 253.505 kb on + strand, within OHPLBJKB_00230at 253.506 kb on - strand, within OHPLBJKB_00230at 253.564 kb on + strand, within OHPLBJKB_00230at 253.569 kb on + strand, within OHPLBJKB_00230at 253.570 kb on - strand, within OHPLBJKB_00230at 253.617 kb on + strand, within OHPLBJKB_00230at 253.618 kb on - strand, within OHPLBJKB_00230at 253.631 kb on - strand, within OHPLBJKB_00230at 253.677 kb on + strand, within OHPLBJKB_00230at 253.739 kb on + strand, within OHPLBJKB_00230at 253.740 kb on - strand, within OHPLBJKB_00230at 253.746 kb on - strand, within OHPLBJKB_00230at 253.746 kb on - strand, within OHPLBJKB_00230at 253.762 kb on - strand, within OHPLBJKB_00230

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Per-strain Table

Position Strand Gene LocusTag Fraction BWC1S MOI1
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250,718 + OHPLBJKB_00227 0.84 +0.7
250,780 + OHPLBJKB_00227 0.88 -0.7
250,798 + OHPLBJKB_00227 0.89 -1.1
250,834 + -0.2
250,911 - -0.4
250,911 - +1.5
250,938 + -2.1
250,939 - +1.1
250,939 - -0.5
250,968 - -0.9
250,981 + +1.7
250,981 + -1.6
250,986 + +1.0
250,986 + +0.1
250,987 - +0.9
250,987 - +1.9
250,987 - -0.0
250,999 + -0.8
251,000 - +8.5
251,003 + -2.0
251,014 + -0.7
251,019 - -0.2
251,034 + +0.9
251,051 + -1.1
251,051 + -0.3
251,051 + -1.1
251,052 - +0.0
251,052 - -0.3
251,052 - -1.4
251,052 - -0.3
251,052 - +1.1
251,052 - +0.3
251,119 + +0.7
251,119 + +0.0
251,119 + +0.9
251,119 + +1.6
251,120 - -2.4
251,120 - +0.3
251,193 + OHPLBJKB_00228 0.20 -0.6
251,194 - OHPLBJKB_00228 0.20 +0.2
251,194 - OHPLBJKB_00228 0.20 -0.1
251,194 - OHPLBJKB_00228 0.20 -0.3
251,450 + OHPLBJKB_00228 0.64 -1.5
251,450 + OHPLBJKB_00228 0.64 +0.7
251,451 - OHPLBJKB_00228 0.64 +1.0
251,451 - OHPLBJKB_00228 0.64 -0.0
251,451 - OHPLBJKB_00228 0.64 -0.4
251,451 - OHPLBJKB_00228 0.64 -0.3
251,451 - OHPLBJKB_00228 0.64 -1.5
251,451 - OHPLBJKB_00228 0.64 -0.5
251,451 - OHPLBJKB_00228 0.64 +0.8
251,505 + OHPLBJKB_00228 0.73 +2.8
251,506 - OHPLBJKB_00228 0.73 -0.6
251,506 - OHPLBJKB_00228 0.73 -0.0
251,506 - OHPLBJKB_00228 0.73 -1.7
251,506 - OHPLBJKB_00228 0.73 -0.3
251,506 - OHPLBJKB_00228 0.73 -1.5
251,652 - -0.4
251,658 + -0.3
251,658 + +2.3
251,659 - -1.0
251,659 - -0.4
251,662 + +0.1
251,662 + -1.4
251,663 - -0.9
251,663 - +0.4
251,704 - -1.5
251,704 - +0.5
251,803 + +1.1
251,831 + OHPLBJKB_00229 0.11 -0.2
251,831 + OHPLBJKB_00229 0.11 -0.2
251,831 + OHPLBJKB_00229 0.11 -0.0
251,832 - OHPLBJKB_00229 0.11 +1.0
251,832 - OHPLBJKB_00229 0.11 +2.2
251,868 - OHPLBJKB_00229 0.14 -1.4
251,931 - OHPLBJKB_00229 0.20 +0.6
251,950 + OHPLBJKB_00229 0.22 -0.9
251,951 - OHPLBJKB_00229 0.22 -0.9
251,961 - OHPLBJKB_00229 0.23 -1.9
251,983 + OHPLBJKB_00229 0.25 -1.0
251,983 + OHPLBJKB_00229 0.25 -0.9
251,983 + OHPLBJKB_00229 0.25 -0.2
251,983 + OHPLBJKB_00229 0.25 +0.3
251,984 - OHPLBJKB_00229 0.25 -1.5
251,992 - OHPLBJKB_00229 0.26 -1.5
252,063 + OHPLBJKB_00229 0.33 +1.3
252,063 + OHPLBJKB_00229 0.33 +0.6
252,063 + OHPLBJKB_00229 0.33 -2.0
252,063 + OHPLBJKB_00229 0.33 -0.6
252,063 + OHPLBJKB_00229 0.33 +1.3
252,064 - OHPLBJKB_00229 0.33 -0.0
252,064 - OHPLBJKB_00229 0.33 +0.1
252,064 - OHPLBJKB_00229 0.33 +0.8
252,064 - OHPLBJKB_00229 0.33 +2.7
252,064 - OHPLBJKB_00229 0.33 -0.3
252,064 - OHPLBJKB_00229 0.33 -1.2
252,064 - OHPLBJKB_00229 0.33 -1.0
252,181 - OHPLBJKB_00229 0.44 -0.8
252,196 + OHPLBJKB_00229 0.46 -1.4
252,197 - OHPLBJKB_00229 0.46 +0.5
252,293 + OHPLBJKB_00229 0.55 -0.2
252,413 - OHPLBJKB_00229 0.66 -1.1
252,413 - OHPLBJKB_00229 0.66 -0.6
252,413 - OHPLBJKB_00229 0.66 -0.6
252,413 - OHPLBJKB_00229 0.66 -0.9
252,413 - OHPLBJKB_00229 0.66 +1.5
252,413 - OHPLBJKB_00229 0.66 +1.0
252,413 - OHPLBJKB_00229 0.66 -1.2
252,421 + OHPLBJKB_00229 0.67 -1.7
252,422 - OHPLBJKB_00229 0.67 -2.7
252,475 + OHPLBJKB_00229 0.72 -0.0
252,476 - OHPLBJKB_00229 0.72 -0.6
252,490 + OHPLBJKB_00229 0.74 -0.6
252,491 - OHPLBJKB_00229 0.74 +0.7
252,491 - OHPLBJKB_00229 0.74 -0.4
252,491 - OHPLBJKB_00229 0.74 -0.1
252,590 + OHPLBJKB_00229 0.83 +1.5
252,590 + OHPLBJKB_00229 0.83 +1.0
252,591 - OHPLBJKB_00229 0.83 +1.3
252,591 - OHPLBJKB_00229 0.83 -0.4
252,653 + OHPLBJKB_00229 0.89 +0.0
252,704 + -0.2
252,705 - +0.5
252,793 + -1.1
252,794 - +0.5
252,794 - -0.8
252,799 + +1.6
252,820 + -0.6
252,821 - -2.0
252,821 - -0.5
252,833 - -0.7
252,833 - +1.5
252,927 - -0.3
252,960 + -0.9
252,960 + -0.5
252,960 + -2.2
252,963 - +0.1
252,973 - +0.7
253,013 + OHPLBJKB_00230 0.12 -0.4
253,013 + OHPLBJKB_00230 0.12 -1.8
253,014 - OHPLBJKB_00230 0.12 -1.2
253,024 + OHPLBJKB_00230 0.13 +2.1
253,024 + OHPLBJKB_00230 0.13 +0.6
253,025 - OHPLBJKB_00230 0.13 +1.7
253,025 - OHPLBJKB_00230 0.13 +1.2
253,085 - OHPLBJKB_00230 0.18 -2.1
253,166 + OHPLBJKB_00230 0.24 -1.4
253,242 - OHPLBJKB_00230 0.30 -0.1
253,244 + OHPLBJKB_00230 0.30 -0.7
253,244 + OHPLBJKB_00230 0.30 +0.3
253,244 + OHPLBJKB_00230 0.30 -0.6
253,244 + OHPLBJKB_00230 0.30 +1.2
253,244 + OHPLBJKB_00230 0.30 +1.5
253,244 + OHPLBJKB_00230 0.30 +0.6
253,245 - OHPLBJKB_00230 0.30 -0.2
253,245 - OHPLBJKB_00230 0.30 +1.0
253,245 - OHPLBJKB_00230 0.30 -0.5
253,375 + OHPLBJKB_00230 0.41 +1.0
253,418 - OHPLBJKB_00230 0.44 -0.1
253,505 + OHPLBJKB_00230 0.51 +1.1
253,506 - OHPLBJKB_00230 0.51 -0.3
253,564 + OHPLBJKB_00230 0.56 -1.8
253,569 + OHPLBJKB_00230 0.56 +0.1
253,570 - OHPLBJKB_00230 0.56 -0.7
253,617 + OHPLBJKB_00230 0.60 -0.9
253,618 - OHPLBJKB_00230 0.60 -0.2
253,631 - OHPLBJKB_00230 0.61 +0.3
253,677 + OHPLBJKB_00230 0.65 +2.3
253,739 + OHPLBJKB_00230 0.70 -0.2
253,740 - OHPLBJKB_00230 0.70 -0.8
253,746 - OHPLBJKB_00230 0.70 +0.3
253,746 - OHPLBJKB_00230 0.70 -0.0
253,762 - OHPLBJKB_00230 0.72 -1.8

Or see this region's nucleotide sequence