Experiment: BWC1S MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00167 and OHPLBJKB_00168 are separated by 475 nucleotides OHPLBJKB_00168 and OHPLBJKB_00169 are separated by 375 nucleotides OHPLBJKB_00169 and OHPLBJKB_00170 are separated by 375 nucleotides
OHPLBJKB_00167: OHPLBJKB_00167 - Inner membrane transport protein YhjV, at 179,596 to 180,867
_00167
OHPLBJKB_00168: OHPLBJKB_00168 - Small toxic polypeptide LdrD, at 181,343 to 181,450
_00168
OHPLBJKB_00169: OHPLBJKB_00169 - Small toxic polypeptide LdrD, at 181,826 to 181,933
_00169
OHPLBJKB_00170: OHPLBJKB_00170 - Small toxic polypeptide LdrD, at 182,309 to 182,416
_00170
Position (kb) 181
182 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 180.388 kb on - strand, within OHPLBJKB_00167 at 180.537 kb on + strand, within OHPLBJKB_00167 at 180.605 kb on + strand, within OHPLBJKB_00167 at 180.606 kb on - strand, within OHPLBJKB_00167 at 180.619 kb on - strand, within OHPLBJKB_00167 at 180.626 kb on + strand, within OHPLBJKB_00167 at 180.627 kb on - strand, within OHPLBJKB_00167 at 180.662 kb on - strand, within OHPLBJKB_00167 at 180.666 kb on - strand, within OHPLBJKB_00167 at 180.717 kb on + strand, within OHPLBJKB_00167 at 180.718 kb on - strand, within OHPLBJKB_00167 at 180.718 kb on - strand, within OHPLBJKB_00167 at 180.718 kb on - strand, within OHPLBJKB_00167 at 180.718 kb on - strand, within OHPLBJKB_00167 at 180.718 kb on - strand, within OHPLBJKB_00167 at 180.718 kb on - strand, within OHPLBJKB_00167 at 180.722 kb on - strand, within OHPLBJKB_00167 at 180.748 kb on + strand at 180.787 kb on + strand at 180.787 kb on + strand at 180.787 kb on + strand at 180.787 kb on + strand at 180.788 kb on - strand at 180.788 kb on - strand at 180.788 kb on - strand at 180.788 kb on - strand at 180.788 kb on - strand at 180.788 kb on - strand at 180.793 kb on + strand at 180.793 kb on + strand at 180.796 kb on + strand at 180.796 kb on + strand at 180.796 kb on + strand at 180.797 kb on - strand at 180.867 kb on + strand at 180.867 kb on + strand at 180.868 kb on - strand at 180.908 kb on + strand at 180.955 kb on + strand at 180.956 kb on - strand at 180.956 kb on - strand at 180.956 kb on - strand at 180.956 kb on - strand at 181.132 kb on + strand at 181.279 kb on - strand at 181.326 kb on - strand at 181.326 kb on - strand at 181.326 kb on - strand at 181.340 kb on + strand at 181.342 kb on + strand at 181.342 kb on + strand at 181.343 kb on - strand at 181.343 kb on - strand at 181.417 kb on + strand, within OHPLBJKB_00168 at 181.417 kb on + strand, within OHPLBJKB_00168 at 181.417 kb on + strand, within OHPLBJKB_00168
Per-strain Table
Position Strand Gene LocusTag Fraction BWC1S MOI1 remove 180,388 - OHPLBJKB_00167 0.62 -0.5 180,537 + OHPLBJKB_00167 0.74 -0.4 180,605 + OHPLBJKB_00167 0.79 -1.9 180,606 - OHPLBJKB_00167 0.79 -1.8 180,619 - OHPLBJKB_00167 0.80 +0.1 180,626 + OHPLBJKB_00167 0.81 +0.3 180,627 - OHPLBJKB_00167 0.81 +0.1 180,662 - OHPLBJKB_00167 0.84 +1.1 180,666 - OHPLBJKB_00167 0.84 +1.3 180,717 + OHPLBJKB_00167 0.88 +0.4 180,718 - OHPLBJKB_00167 0.88 -0.6 180,718 - OHPLBJKB_00167 0.88 +0.0 180,718 - OHPLBJKB_00167 0.88 -0.0 180,718 - OHPLBJKB_00167 0.88 +1.5 180,718 - OHPLBJKB_00167 0.88 -0.6 180,718 - OHPLBJKB_00167 0.88 +1.0 180,722 - OHPLBJKB_00167 0.89 -0.8 180,748 + -1.4 180,787 + -0.1 180,787 + +0.1 180,787 + -1.5 180,787 + -0.1 180,788 - -1.2 180,788 - -0.0 180,788 - -0.6 180,788 - +5.2 180,788 - -0.1 180,788 - -0.2 180,793 + +1.2 180,793 + +1.7 180,796 + +0.3 180,796 + +0.0 180,796 + +3.2 180,797 - -0.6 180,867 + -0.8 180,867 + +0.5 180,868 - -0.9 180,908 + -1.9 180,955 + -1.2 180,956 - -0.1 180,956 - -1.2 180,956 - -0.6 180,956 - -0.0 181,132 + -0.3 181,279 - +0.1 181,326 - +0.4 181,326 - -0.6 181,326 - -0.5 181,340 + -0.5 181,342 + +0.4 181,342 + -1.5 181,343 - -1.0 181,343 - -1.2 181,417 + OHPLBJKB_00168 0.69 -0.0 181,417 + OHPLBJKB_00168 0.69 +0.1 181,417 + OHPLBJKB_00168 0.69 -0.5
Or see this region's nucleotide sequence