Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06974 and MPMX19_06975 are separated by 150 nucleotides MPMX19_06975 and MPMX19_06976 are separated by 102 nucleotides
MPMX19_06974: MPMX19_06974 - 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2, at 251,587 to 252,339
_06974
MPMX19_06975: MPMX19_06975 - HTH-type transcriptional regulator HdfR, at 252,490 to 253,449
_06975
MPMX19_06976: MPMX19_06976 - (2S)-methylsuccinyl-CoA dehydrogenase, at 253,552 to 255,255
_06976
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 251.490 kb on + strand at 251.508 kb on + strand at 251.561 kb on + strand at 251.561 kb on + strand at 251.562 kb on - strand at 251.657 kb on + strand at 251.658 kb on - strand at 251.658 kb on - strand at 251.879 kb on + strand, within MPMX19_06974 at 251.880 kb on - strand, within MPMX19_06974 at 251.981 kb on + strand, within MPMX19_06974 at 251.982 kb on - strand, within MPMX19_06974 at 251.982 kb on - strand, within MPMX19_06974 at 251.982 kb on - strand, within MPMX19_06974 at 251.987 kb on + strand, within MPMX19_06974 at 251.987 kb on + strand, within MPMX19_06974 at 251.988 kb on - strand, within MPMX19_06974 at 251.988 kb on - strand, within MPMX19_06974 at 251.988 kb on - strand, within MPMX19_06974 at 251.988 kb on - strand, within MPMX19_06974 at 251.988 kb on - strand, within MPMX19_06974 at 252.384 kb on + strand at 252.385 kb on - strand at 252.478 kb on - strand at 253.010 kb on + strand, within MPMX19_06975 at 253.011 kb on - strand, within MPMX19_06975 at 253.011 kb on - strand, within MPMX19_06975 at 253.100 kb on + strand, within MPMX19_06975 at 253.101 kb on - strand, within MPMX19_06975 at 253.101 kb on - strand, within MPMX19_06975 at 253.101 kb on - strand, within MPMX19_06975 at 253.101 kb on - strand, within MPMX19_06975 at 253.101 kb on - strand, within MPMX19_06975 at 253.256 kb on + strand, within MPMX19_06975 at 253.256 kb on + strand, within MPMX19_06975 at 253.256 kb on + strand, within MPMX19_06975 at 253.257 kb on - strand, within MPMX19_06975 at 253.304 kb on + strand, within MPMX19_06975 at 253.304 kb on + strand, within MPMX19_06975 at 253.304 kb on + strand, within MPMX19_06975 at 253.304 kb on + strand, within MPMX19_06975 at 253.305 kb on - strand, within MPMX19_06975 at 253.305 kb on - strand, within MPMX19_06975 at 253.305 kb on - strand, within MPMX19_06975 at 253.305 kb on - strand, within MPMX19_06975 at 253.305 kb on - strand, within MPMX19_06975 at 253.427 kb on + strand at 253.428 kb on - strand at 253.428 kb on - strand at 253.428 kb on - strand at 253.428 kb on - strand at 253.428 kb on - strand at 253.495 kb on - strand at 253.673 kb on + strand at 253.673 kb on + strand at 253.674 kb on - strand at 253.674 kb on - strand at 253.803 kb on - strand, within MPMX19_06976 at 253.803 kb on - strand, within MPMX19_06976 at 253.803 kb on - strand, within MPMX19_06976 at 253.803 kb on - strand, within MPMX19_06976 at 253.803 kb on - strand, within MPMX19_06976 at 253.910 kb on + strand, within MPMX19_06976 at 254.075 kb on + strand, within MPMX19_06976
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 251,490 + +0.6 251,508 + -0.4 251,561 + -1.1 251,561 + +0.3 251,562 - -0.4 251,657 + -0.8 251,658 - -2.1 251,658 - +0.8 251,879 + MPMX19_06974 0.39 -0.9 251,880 - MPMX19_06974 0.39 +0.3 251,981 + MPMX19_06974 0.52 +0.3 251,982 - MPMX19_06974 0.52 -0.0 251,982 - MPMX19_06974 0.52 -0.6 251,982 - MPMX19_06974 0.52 +0.2 251,987 + MPMX19_06974 0.53 -0.6 251,987 + MPMX19_06974 0.53 +0.1 251,988 - MPMX19_06974 0.53 -2.5 251,988 - MPMX19_06974 0.53 -0.5 251,988 - MPMX19_06974 0.53 -0.2 251,988 - MPMX19_06974 0.53 +0.1 251,988 - MPMX19_06974 0.53 -0.7 252,384 + -1.1 252,385 - +0.1 252,478 - -1.2 253,010 + MPMX19_06975 0.54 -0.2 253,011 - MPMX19_06975 0.54 +1.5 253,011 - MPMX19_06975 0.54 +0.3 253,100 + MPMX19_06975 0.64 -1.0 253,101 - MPMX19_06975 0.64 +0.9 253,101 - MPMX19_06975 0.64 -0.3 253,101 - MPMX19_06975 0.64 -2.9 253,101 - MPMX19_06975 0.64 -1.4 253,101 - MPMX19_06975 0.64 +0.5 253,256 + MPMX19_06975 0.80 -0.1 253,256 + MPMX19_06975 0.80 +0.3 253,256 + MPMX19_06975 0.80 +0.7 253,257 - MPMX19_06975 0.80 +0.5 253,304 + MPMX19_06975 0.85 -0.1 253,304 + MPMX19_06975 0.85 +0.7 253,304 + MPMX19_06975 0.85 +0.7 253,304 + MPMX19_06975 0.85 +0.9 253,305 - MPMX19_06975 0.85 -0.4 253,305 - MPMX19_06975 0.85 +0.3 253,305 - MPMX19_06975 0.85 +0.1 253,305 - MPMX19_06975 0.85 -0.0 253,305 - MPMX19_06975 0.85 +0.6 253,427 + +0.9 253,428 - -0.9 253,428 - -1.0 253,428 - -0.1 253,428 - -1.1 253,428 - -0.8 253,495 - +0.3 253,673 + -0.9 253,673 + -0.3 253,674 - +1.0 253,674 - -0.1 253,803 - MPMX19_06976 0.15 +0.2 253,803 - MPMX19_06976 0.15 -1.2 253,803 - MPMX19_06976 0.15 -0.9 253,803 - MPMX19_06976 0.15 -0.9 253,803 - MPMX19_06976 0.15 -0.2 253,910 + MPMX19_06976 0.21 -0.7 254,075 + MPMX19_06976 0.31 +0.0
Or see this region's nucleotide sequence