Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06964 and MPMX19_06965 are separated by 441 nucleotides MPMX19_06965 and MPMX19_06966 are separated by 62 nucleotides MPMX19_06966 and MPMX19_06967 are separated by 138 nucleotides
MPMX19_06964: MPMX19_06964 - HTH-type transcriptional regulator KipR, at 241,692 to 242,456
_06964
MPMX19_06965: MPMX19_06965 - hypothetical protein, at 242,898 to 243,314
_06965
MPMX19_06966: MPMX19_06966 - hypothetical protein, at 243,377 to 244,135
_06966
MPMX19_06967: MPMX19_06967 - hypothetical protein, at 244,274 to 245,032
_06967
Position (kb)
243
244
245 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 242.454 kb on + strand at 242.454 kb on + strand at 242.454 kb on + strand at 242.455 kb on - strand at 242.455 kb on - strand at 242.897 kb on - strand at 243.312 kb on + strand at 243.312 kb on + strand at 243.313 kb on - strand at 243.313 kb on - strand at 243.313 kb on - strand at 243.398 kb on + strand at 243.398 kb on + strand at 243.399 kb on - strand at 243.399 kb on - strand at 243.399 kb on - strand at 243.603 kb on + strand, within MPMX19_06966 at 243.628 kb on + strand, within MPMX19_06966 at 243.716 kb on - strand, within MPMX19_06966 at 243.773 kb on - strand, within MPMX19_06966 at 243.776 kb on + strand, within MPMX19_06966 at 243.780 kb on + strand, within MPMX19_06966 at 244.109 kb on + strand at 244.109 kb on + strand at 244.141 kb on + strand at 244.141 kb on + strand at 244.141 kb on + strand at 244.142 kb on - strand at 244.142 kb on - strand at 244.142 kb on - strand at 244.142 kb on - strand at 244.242 kb on - strand at 244.242 kb on - strand at 244.242 kb on - strand at 244.242 kb on - strand at 244.295 kb on + strand at 244.295 kb on + strand at 244.295 kb on + strand at 244.295 kb on + strand at 244.295 kb on + strand at 244.295 kb on + strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.296 kb on - strand at 244.297 kb on + strand at 244.297 kb on + strand at 244.298 kb on - strand at 244.516 kb on + strand, within MPMX19_06967 at 244.557 kb on + strand, within MPMX19_06967 at 244.624 kb on + strand, within MPMX19_06967 at 244.726 kb on - strand, within MPMX19_06967 at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.006 kb on + strand at 245.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 242,454 + +0.1 242,454 + -1.2 242,454 + -0.1 242,455 - -0.4 242,455 - +0.4 242,897 - -1.4 243,312 + +0.6 243,312 + +0.9 243,313 - -1.1 243,313 - +0.6 243,313 - -0.3 243,398 + -0.3 243,398 + +0.7 243,399 - -0.9 243,399 - +0.3 243,399 - +0.3 243,603 + MPMX19_06966 0.30 +0.6 243,628 + MPMX19_06966 0.33 +0.3 243,716 - MPMX19_06966 0.45 -3.5 243,773 - MPMX19_06966 0.52 +0.3 243,776 + MPMX19_06966 0.53 +0.3 243,780 + MPMX19_06966 0.53 +0.3 244,109 + +0.3 244,109 + +1.4 244,141 + -0.1 244,141 + -0.8 244,141 + +0.9 244,142 - +0.3 244,142 - -0.3 244,142 - -0.9 244,142 - +0.5 244,242 - +0.5 244,242 - -1.0 244,242 - -0.4 244,242 - -0.0 244,295 + -1.2 244,295 + -1.7 244,295 + -0.0 244,295 + +0.5 244,295 + -0.2 244,295 + -0.3 244,296 - -0.5 244,296 - -0.1 244,296 - -0.1 244,296 - +0.3 244,296 - -0.1 244,296 - +0.2 244,296 - +2.3 244,296 - -0.9 244,297 + -0.7 244,297 + -1.1 244,298 - +0.3 244,516 + MPMX19_06967 0.32 -1.4 244,557 + MPMX19_06967 0.37 -1.6 244,624 + MPMX19_06967 0.46 -0.5 244,726 - MPMX19_06967 0.60 -1.5 245,006 + -2.0 245,006 + +0.3 245,006 + +0.3 245,006 + +0.0 245,006 + -0.4 245,006 + -0.8 245,006 + +0.5 245,006 + +0.1 245,007 - -0.2
Or see this region's nucleotide sequence