Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06916

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06915 and MPMX19_06916 are separated by 50 nucleotidesMPMX19_06916 and MPMX19_06917 are separated by 141 nucleotides MPMX19_06915: MPMX19_06915 - Putative acyl-CoA dehydrogenase FadE17, at 190,752 to 191,894 _06915 MPMX19_06916: MPMX19_06916 - Crotonyl-CoA hydratase, at 191,945 to 192,745 _06916 MPMX19_06917: MPMX19_06917 - HTH-type transcriptional regulator PgrR, at 192,887 to 193,819 _06917 Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2at 190.980 kb on + strand, within MPMX19_06915at 190.980 kb on + strand, within MPMX19_06915at 190.980 kb on + strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 190.981 kb on - strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.244 kb on + strand, within MPMX19_06915at 191.245 kb on - strand, within MPMX19_06915at 191.245 kb on - strand, within MPMX19_06915at 191.245 kb on - strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.262 kb on + strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.263 kb on - strand, within MPMX19_06915at 191.561 kb on + strand, within MPMX19_06915at 191.562 kb on - strand, within MPMX19_06915at 192.206 kb on + strand, within MPMX19_06916at 192.206 kb on + strand, within MPMX19_06916at 192.206 kb on + strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.207 kb on - strand, within MPMX19_06916at 192.743 kb on + strandat 192.743 kb on + strandat 192.744 kb on - strandat 193.107 kb on + strand, within MPMX19_06917at 193.107 kb on + strand, within MPMX19_06917at 193.108 kb on - strand, within MPMX19_06917at 193.251 kb on + strand, within MPMX19_06917at 193.251 kb on + strand, within MPMX19_06917at 193.251 kb on + strand, within MPMX19_06917at 193.314 kb on + strand, within MPMX19_06917at 193.315 kb on - strand, within MPMX19_06917at 193.467 kb on + strand, within MPMX19_06917at 193.736 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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190,980 + MPMX19_06915 0.20 +0.7
190,980 + MPMX19_06915 0.20 -0.2
190,980 + MPMX19_06915 0.20 -0.8
190,981 - MPMX19_06915 0.20 -0.7
190,981 - MPMX19_06915 0.20 -0.2
190,981 - MPMX19_06915 0.20 -1.0
190,981 - MPMX19_06915 0.20 -1.9
190,981 - MPMX19_06915 0.20 -1.0
190,981 - MPMX19_06915 0.20 +0.3
190,981 - MPMX19_06915 0.20 +1.7
190,981 - MPMX19_06915 0.20 -1.1
190,981 - MPMX19_06915 0.20 -1.1
190,981 - MPMX19_06915 0.20 -0.7
190,981 - MPMX19_06915 0.20 -0.8
191,244 + MPMX19_06915 0.43 -0.7
191,244 + MPMX19_06915 0.43 -0.7
191,244 + MPMX19_06915 0.43 +0.7
191,244 + MPMX19_06915 0.43 -0.1
191,244 + MPMX19_06915 0.43 +0.8
191,244 + MPMX19_06915 0.43 +0.5
191,244 + MPMX19_06915 0.43 -1.5
191,245 - MPMX19_06915 0.43 -1.5
191,245 - MPMX19_06915 0.43 +1.3
191,245 - MPMX19_06915 0.43 -1.2
191,262 + MPMX19_06915 0.45 +1.9
191,262 + MPMX19_06915 0.45 -0.1
191,262 + MPMX19_06915 0.45 +1.5
191,262 + MPMX19_06915 0.45 +0.3
191,262 + MPMX19_06915 0.45 -0.1
191,262 + MPMX19_06915 0.45 -1.1
191,262 + MPMX19_06915 0.45 -2.0
191,263 - MPMX19_06915 0.45 +0.5
191,263 - MPMX19_06915 0.45 -0.5
191,263 - MPMX19_06915 0.45 -0.6
191,263 - MPMX19_06915 0.45 +0.7
191,263 - MPMX19_06915 0.45 +1.3
191,263 - MPMX19_06915 0.45 -0.8
191,263 - MPMX19_06915 0.45 -1.7
191,561 + MPMX19_06915 0.71 +0.2
191,562 - MPMX19_06915 0.71 -0.1
192,206 + MPMX19_06916 0.33 -1.7
192,206 + MPMX19_06916 0.33 -0.5
192,206 + MPMX19_06916 0.33 +0.7
192,207 - MPMX19_06916 0.33 -2.0
192,207 - MPMX19_06916 0.33 +0.1
192,207 - MPMX19_06916 0.33 -1.5
192,207 - MPMX19_06916 0.33 +0.3
192,743 + -2.5
192,743 + +0.5
192,744 - -0.9
193,107 + MPMX19_06917 0.24 -0.8
193,107 + MPMX19_06917 0.24 -1.4
193,108 - MPMX19_06917 0.24 +0.9
193,251 + MPMX19_06917 0.39 +1.9
193,251 + MPMX19_06917 0.39 -0.6
193,251 + MPMX19_06917 0.39 +1.0
193,314 + MPMX19_06917 0.46 -1.2
193,315 - MPMX19_06917 0.46 -1.0
193,467 + MPMX19_06917 0.62 -0.1
193,736 + -0.3

Or see this region's nucleotide sequence