Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06908

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06907 and MPMX19_06908 are separated by 359 nucleotidesMPMX19_06908 and MPMX19_06909 are separated by 145 nucleotides MPMX19_06907: MPMX19_06907 - L-talarate/galactarate dehydratase, at 182,092 to 183,267 _06907 MPMX19_06908: MPMX19_06908 - Leu/Ile/Val-binding protein, at 183,627 to 184,835 _06908 MPMX19_06909: MPMX19_06909 - High-affinity branched-chain amino acid transport system permease protein LivH, at 184,981 to 185,841 _06909 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2at 182.780 kb on + strand, within MPMX19_06907at 182.780 kb on + strand, within MPMX19_06907at 182.781 kb on - strand, within MPMX19_06907at 182.781 kb on - strand, within MPMX19_06907at 182.781 kb on - strand, within MPMX19_06907at 182.820 kb on - strand, within MPMX19_06907at 182.820 kb on - strand, within MPMX19_06907at 183.044 kb on + strand, within MPMX19_06907at 183.607 kb on + strandat 183.611 kb on + strandat 183.611 kb on + strandat 183.611 kb on + strandat 183.612 kb on - strandat 183.612 kb on - strandat 183.612 kb on - strandat 183.864 kb on - strand, within MPMX19_06908at 183.864 kb on - strand, within MPMX19_06908at 184.072 kb on - strand, within MPMX19_06908at 184.132 kb on - strand, within MPMX19_06908at 184.188 kb on + strand, within MPMX19_06908at 184.251 kb on + strand, within MPMX19_06908at 184.251 kb on + strand, within MPMX19_06908at 184.251 kb on + strand, within MPMX19_06908at 184.251 kb on + strand, within MPMX19_06908at 184.252 kb on - strand, within MPMX19_06908at 184.252 kb on - strand, within MPMX19_06908at 184.252 kb on - strand, within MPMX19_06908at 184.482 kb on + strand, within MPMX19_06908at 184.482 kb on + strand, within MPMX19_06908at 184.482 kb on + strand, within MPMX19_06908at 184.482 kb on + strand, within MPMX19_06908at 184.483 kb on - strand, within MPMX19_06908at 184.483 kb on - strand, within MPMX19_06908at 184.483 kb on - strand, within MPMX19_06908at 184.494 kb on + strand, within MPMX19_06908at 184.495 kb on - strand, within MPMX19_06908at 184.509 kb on + strand, within MPMX19_06908at 184.509 kb on + strand, within MPMX19_06908at 184.509 kb on + strand, within MPMX19_06908at 184.509 kb on + strand, within MPMX19_06908at 184.509 kb on + strand, within MPMX19_06908at 184.509 kb on + strand, within MPMX19_06908at 184.509 kb on + strand, within MPMX19_06908at 184.510 kb on - strand, within MPMX19_06908at 184.510 kb on - strand, within MPMX19_06908at 184.510 kb on - strand, within MPMX19_06908at 184.510 kb on - strand, within MPMX19_06908at 184.617 kb on + strand, within MPMX19_06908at 184.617 kb on + strand, within MPMX19_06908at 184.618 kb on - strand, within MPMX19_06908at 184.618 kb on - strand, within MPMX19_06908at 184.618 kb on - strand, within MPMX19_06908at 184.722 kb on + strandat 184.722 kb on + strandat 184.722 kb on + strandat 184.723 kb on - strandat 184.723 kb on - strandat 184.723 kb on - strandat 184.732 kb on - strandat 184.732 kb on - strandat 185.023 kb on + strandat 185.024 kb on - strandat 185.044 kb on + strandat 185.044 kb on + strandat 185.045 kb on - strandat 185.045 kb on - strandat 185.045 kb on - strandat 185.045 kb on - strandat 185.045 kb on - strandat 185.125 kb on + strand, within MPMX19_06909at 185.126 kb on - strand, within MPMX19_06909at 185.126 kb on - strand, within MPMX19_06909at 185.126 kb on - strand, within MPMX19_06909at 185.386 kb on + strand, within MPMX19_06909at 185.441 kb on - strand, within MPMX19_06909at 185.441 kb on - strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.455 kb on + strand, within MPMX19_06909at 185.456 kb on - strand, within MPMX19_06909at 185.456 kb on - strand, within MPMX19_06909at 185.456 kb on - strand, within MPMX19_06909at 185.456 kb on - strand, within MPMX19_06909at 185.456 kb on - strand, within MPMX19_06909at 185.636 kb on - strand, within MPMX19_06909at 185.636 kb on - strand, within MPMX19_06909at 185.731 kb on + strand, within MPMX19_06909at 185.731 kb on + strand, within MPMX19_06909at 185.731 kb on + strand, within MPMX19_06909at 185.732 kb on - strand, within MPMX19_06909at 185.732 kb on - strand, within MPMX19_06909at 185.732 kb on - strand, within MPMX19_06909

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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182,780 + MPMX19_06907 0.59 +0.9
182,780 + MPMX19_06907 0.59 -0.9
182,781 - MPMX19_06907 0.59 +0.5
182,781 - MPMX19_06907 0.59 +0.3
182,781 - MPMX19_06907 0.59 -1.2
182,820 - MPMX19_06907 0.62 +0.8
182,820 - MPMX19_06907 0.62 -0.4
183,044 + MPMX19_06907 0.81 -0.5
183,607 + +0.1
183,611 + +0.1
183,611 + +0.2
183,611 + +0.5
183,612 - +1.3
183,612 - -0.4
183,612 - -1.1
183,864 - MPMX19_06908 0.20 +1.2
183,864 - MPMX19_06908 0.20 +0.3
184,072 - MPMX19_06908 0.37 -0.2
184,132 - MPMX19_06908 0.42 +0.9
184,188 + MPMX19_06908 0.46 +0.3
184,251 + MPMX19_06908 0.52 +0.2
184,251 + MPMX19_06908 0.52 -0.2
184,251 + MPMX19_06908 0.52 +1.4
184,251 + MPMX19_06908 0.52 +0.5
184,252 - MPMX19_06908 0.52 -2.7
184,252 - MPMX19_06908 0.52 -1.4
184,252 - MPMX19_06908 0.52 -0.7
184,482 + MPMX19_06908 0.71 +1.5
184,482 + MPMX19_06908 0.71 -0.1
184,482 + MPMX19_06908 0.71 +0.3
184,482 + MPMX19_06908 0.71 +1.4
184,483 - MPMX19_06908 0.71 -0.9
184,483 - MPMX19_06908 0.71 +0.0
184,483 - MPMX19_06908 0.71 +2.1
184,494 + MPMX19_06908 0.72 -0.4
184,495 - MPMX19_06908 0.72 -0.4
184,509 + MPMX19_06908 0.73 -0.6
184,509 + MPMX19_06908 0.73 -2.1
184,509 + MPMX19_06908 0.73 -0.1
184,509 + MPMX19_06908 0.73 +0.2
184,509 + MPMX19_06908 0.73 -1.0
184,509 + MPMX19_06908 0.73 -0.1
184,509 + MPMX19_06908 0.73 -1.7
184,510 - MPMX19_06908 0.73 +0.3
184,510 - MPMX19_06908 0.73 -0.4
184,510 - MPMX19_06908 0.73 +0.5
184,510 - MPMX19_06908 0.73 +0.2
184,617 + MPMX19_06908 0.82 -0.6
184,617 + MPMX19_06908 0.82 +0.1
184,618 - MPMX19_06908 0.82 -1.8
184,618 - MPMX19_06908 0.82 -0.3
184,618 - MPMX19_06908 0.82 +1.1
184,722 + -1.1
184,722 + -1.2
184,722 + +0.8
184,723 - +1.0
184,723 - -0.6
184,723 - -0.7
184,732 - -0.0
184,732 - -1.5
185,023 + -0.9
185,024 - -0.6
185,044 + -0.5
185,044 + -1.7
185,045 - -0.7
185,045 - +1.3
185,045 - -1.5
185,045 - +0.2
185,045 - +0.3
185,125 + MPMX19_06909 0.17 -0.7
185,126 - MPMX19_06909 0.17 -1.5
185,126 - MPMX19_06909 0.17 -0.8
185,126 - MPMX19_06909 0.17 +0.1
185,386 + MPMX19_06909 0.47 -1.4
185,441 - MPMX19_06909 0.53 -0.7
185,441 - MPMX19_06909 0.53 +0.1
185,455 + MPMX19_06909 0.55 -0.3
185,455 + MPMX19_06909 0.55 -0.4
185,455 + MPMX19_06909 0.55 +0.3
185,455 + MPMX19_06909 0.55 -1.8
185,455 + MPMX19_06909 0.55 +1.0
185,455 + MPMX19_06909 0.55 +0.2
185,456 - MPMX19_06909 0.55 -0.4
185,456 - MPMX19_06909 0.55 -0.8
185,456 - MPMX19_06909 0.55 -1.2
185,456 - MPMX19_06909 0.55 +1.5
185,456 - MPMX19_06909 0.55 +0.9
185,636 - MPMX19_06909 0.76 -0.4
185,636 - MPMX19_06909 0.76 -1.4
185,731 + MPMX19_06909 0.87 -1.8
185,731 + MPMX19_06909 0.87 -0.2
185,731 + MPMX19_06909 0.87 -0.1
185,732 - MPMX19_06909 0.87 +0.1
185,732 - MPMX19_06909 0.87 -0.1
185,732 - MPMX19_06909 0.87 +0.3

Or see this region's nucleotide sequence