Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06884 and MPMX19_06885 are separated by 8 nucleotides MPMX19_06885 and MPMX19_06886 overlap by 4 nucleotides MPMX19_06886 and MPMX19_06887 are separated by 10 nucleotides
MPMX19_06884: MPMX19_06884 - hypothetical protein, at 156,064 to 157,110
_06884
MPMX19_06885: MPMX19_06885 - Nitrate import ATP-binding protein NrtD, at 157,119 to 157,931
_06885
MPMX19_06886: MPMX19_06886 - Putative aliphatic sulfonates transport permease protein SsuC, at 157,928 to 158,818
_06886
MPMX19_06887: MPMX19_06887 - Adenine deaminase, at 158,829 to 160,508
_06887
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.429 kb on + strand, within MPMX19_06885 at 157.430 kb on - strand, within MPMX19_06885 at 157.430 kb on - strand, within MPMX19_06885 at 157.430 kb on - strand, within MPMX19_06885 at 157.519 kb on - strand, within MPMX19_06885 at 157.840 kb on - strand, within MPMX19_06885 at 157.840 kb on - strand, within MPMX19_06885 at 158.374 kb on - strand, within MPMX19_06886 at 158.374 kb on - strand, within MPMX19_06886 at 158.504 kb on + strand, within MPMX19_06886 at 158.504 kb on + strand, within MPMX19_06886 at 158.504 kb on + strand, within MPMX19_06886 at 158.508 kb on + strand, within MPMX19_06886 at 158.508 kb on + strand, within MPMX19_06886 at 158.508 kb on + strand, within MPMX19_06886 at 158.508 kb on + strand, within MPMX19_06886 at 158.508 kb on + strand, within MPMX19_06886 at 158.508 kb on + strand, within MPMX19_06886 at 158.508 kb on + strand, within MPMX19_06886 at 158.508 kb on + strand, within MPMX19_06886 at 158.509 kb on - strand, within MPMX19_06886 at 158.673 kb on - strand, within MPMX19_06886 at 158.673 kb on - strand, within MPMX19_06886 at 158.673 kb on - strand, within MPMX19_06886 at 158.673 kb on - strand, within MPMX19_06886 at 158.673 kb on - strand, within MPMX19_06886 at 159.047 kb on + strand, within MPMX19_06887 at 159.047 kb on + strand, within MPMX19_06887 at 159.047 kb on + strand, within MPMX19_06887 at 159.048 kb on - strand, within MPMX19_06887 at 159.280 kb on - strand, within MPMX19_06887 at 159.280 kb on - strand, within MPMX19_06887 at 159.280 kb on - strand, within MPMX19_06887 at 159.544 kb on - strand, within MPMX19_06887
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 157,429 + MPMX19_06885 0.38 +0.1 157,430 - MPMX19_06885 0.38 -0.8 157,430 - MPMX19_06885 0.38 -0.0 157,430 - MPMX19_06885 0.38 -2.0 157,519 - MPMX19_06885 0.49 +0.6 157,840 - MPMX19_06885 0.89 +1.3 157,840 - MPMX19_06885 0.89 -0.4 158,374 - MPMX19_06886 0.50 -0.5 158,374 - MPMX19_06886 0.50 +0.9 158,504 + MPMX19_06886 0.65 +0.2 158,504 + MPMX19_06886 0.65 +0.1 158,504 + MPMX19_06886 0.65 -1.4 158,508 + MPMX19_06886 0.65 +0.9 158,508 + MPMX19_06886 0.65 -1.2 158,508 + MPMX19_06886 0.65 -1.1 158,508 + MPMX19_06886 0.65 +0.4 158,508 + MPMX19_06886 0.65 -0.1 158,508 + MPMX19_06886 0.65 +1.9 158,508 + MPMX19_06886 0.65 -1.3 158,508 + MPMX19_06886 0.65 +1.2 158,509 - MPMX19_06886 0.65 +1.1 158,673 - MPMX19_06886 0.84 +0.3 158,673 - MPMX19_06886 0.84 -0.3 158,673 - MPMX19_06886 0.84 -1.5 158,673 - MPMX19_06886 0.84 +0.0 158,673 - MPMX19_06886 0.84 -0.5 159,047 + MPMX19_06887 0.13 -0.2 159,047 + MPMX19_06887 0.13 -1.0 159,047 + MPMX19_06887 0.13 +0.2 159,048 - MPMX19_06887 0.13 -0.7 159,280 - MPMX19_06887 0.27 -1.5 159,280 - MPMX19_06887 0.27 -0.5 159,280 - MPMX19_06887 0.27 -2.4 159,544 - MPMX19_06887 0.43 -1.5
Or see this region's nucleotide sequence