Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06859

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06858 and MPMX19_06859 are separated by 5 nucleotidesMPMX19_06859 and MPMX19_06860 overlap by 4 nucleotidesMPMX19_06860 and MPMX19_06861 overlap by 4 nucleotides MPMX19_06858: MPMX19_06858 - Acetophenone carboxylase gamma subunit, at 127,147 to 129,207 _06858 MPMX19_06859: MPMX19_06859 - Acetophenone carboxylase delta subunit, at 129,213 to 131,201 _06859 MPMX19_06860: MPMX19_06860 - hypothetical protein, at 131,198 to 131,506 _06860 MPMX19_06861: MPMX19_06861 - Hydrogen cyanide synthase subunit HcnB, at 131,503 to 132,888 _06861 Position (kb) 129 130 131 132Strain fitness (log2 ratio) -2 -1 0 1 2 3at 128.239 kb on + strand, within MPMX19_06858at 128.745 kb on + strand, within MPMX19_06858at 128.745 kb on + strand, within MPMX19_06858at 128.785 kb on + strand, within MPMX19_06858at 128.800 kb on + strand, within MPMX19_06858at 128.800 kb on + strand, within MPMX19_06858at 128.801 kb on - strand, within MPMX19_06858at 128.801 kb on - strand, within MPMX19_06858at 128.883 kb on + strand, within MPMX19_06858at 128.893 kb on + strand, within MPMX19_06858at 128.894 kb on - strand, within MPMX19_06858at 128.900 kb on + strand, within MPMX19_06858at 129.064 kb on + strandat 129.064 kb on + strandat 129.065 kb on - strandat 129.065 kb on - strandat 129.065 kb on - strandat 129.223 kb on + strandat 129.224 kb on + strandat 129.224 kb on + strandat 129.224 kb on + strandat 129.224 kb on + strandat 129.225 kb on - strandat 129.225 kb on - strandat 129.225 kb on - strandat 129.225 kb on - strandat 129.225 kb on - strandat 129.415 kb on - strand, within MPMX19_06859at 129.415 kb on - strand, within MPMX19_06859at 129.415 kb on - strand, within MPMX19_06859at 129.415 kb on - strand, within MPMX19_06859at 129.445 kb on - strand, within MPMX19_06859at 129.480 kb on + strand, within MPMX19_06859at 129.480 kb on + strand, within MPMX19_06859at 129.480 kb on + strand, within MPMX19_06859at 129.537 kb on + strand, within MPMX19_06859at 129.537 kb on + strand, within MPMX19_06859at 129.538 kb on - strand, within MPMX19_06859at 129.538 kb on - strand, within MPMX19_06859at 129.538 kb on - strand, within MPMX19_06859at 129.538 kb on - strand, within MPMX19_06859at 129.743 kb on + strand, within MPMX19_06859at 129.928 kb on - strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.099 kb on - strand, within MPMX19_06859at 130.099 kb on - strand, within MPMX19_06859at 130.099 kb on - strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.111 kb on - strand, within MPMX19_06859at 130.111 kb on - strand, within MPMX19_06859at 130.111 kb on - strand, within MPMX19_06859at 130.111 kb on - strand, within MPMX19_06859at 130.111 kb on - strand, within MPMX19_06859at 130.449 kb on + strand, within MPMX19_06859at 130.449 kb on + strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.986 kb on + strand, within MPMX19_06859at 130.987 kb on - strand, within MPMX19_06859at 131.013 kb on + strandat 131.014 kb on - strandat 131.014 kb on - strandat 131.014 kb on - strandat 131.638 kb on + strandat 131.638 kb on + strandat 131.638 kb on + strandat 131.639 kb on - strandat 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.839 kb on + strand, within MPMX19_06861at 131.840 kb on - strand, within MPMX19_06861at 131.914 kb on + strand, within MPMX19_06861at 131.914 kb on + strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.164 kb on - strand, within MPMX19_06861at 132.164 kb on - strand, within MPMX19_06861

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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128,239 + MPMX19_06858 0.53 +0.3
128,745 + MPMX19_06858 0.78 +0.1
128,745 + MPMX19_06858 0.78 +0.3
128,785 + MPMX19_06858 0.79 +0.5
128,800 + MPMX19_06858 0.80 +1.2
128,800 + MPMX19_06858 0.80 -0.6
128,801 - MPMX19_06858 0.80 -1.0
128,801 - MPMX19_06858 0.80 -1.0
128,883 + MPMX19_06858 0.84 +1.1
128,893 + MPMX19_06858 0.85 -1.4
128,894 - MPMX19_06858 0.85 +0.9
128,900 + MPMX19_06858 0.85 -1.4
129,064 + -0.2
129,064 + +0.6
129,065 - +3.7
129,065 - -1.5
129,065 - +0.0
129,223 + +0.8
129,224 + -0.1
129,224 + -2.2
129,224 + -2.3
129,224 + +1.9
129,225 - +0.1
129,225 - -0.6
129,225 - -1.5
129,225 - -1.5
129,225 - -0.5
129,415 - MPMX19_06859 0.10 -0.8
129,415 - MPMX19_06859 0.10 -1.2
129,415 - MPMX19_06859 0.10 +1.6
129,415 - MPMX19_06859 0.10 +0.6
129,445 - MPMX19_06859 0.12 +0.6
129,480 + MPMX19_06859 0.13 +1.1
129,480 + MPMX19_06859 0.13 -1.7
129,480 + MPMX19_06859 0.13 -1.1
129,537 + MPMX19_06859 0.16 +0.1
129,537 + MPMX19_06859 0.16 +0.3
129,538 - MPMX19_06859 0.16 -0.7
129,538 - MPMX19_06859 0.16 +2.2
129,538 - MPMX19_06859 0.16 -0.2
129,538 - MPMX19_06859 0.16 -0.4
129,743 + MPMX19_06859 0.27 -2.0
129,928 - MPMX19_06859 0.36 +0.2
130,098 + MPMX19_06859 0.44 +1.2
130,098 + MPMX19_06859 0.44 -0.1
130,098 + MPMX19_06859 0.44 +0.3
130,098 + MPMX19_06859 0.44 +0.3
130,098 + MPMX19_06859 0.44 +0.2
130,098 + MPMX19_06859 0.44 +0.3
130,099 - MPMX19_06859 0.45 +0.1
130,099 - MPMX19_06859 0.45 +1.0
130,099 - MPMX19_06859 0.45 +1.1
130,101 + MPMX19_06859 0.45 -0.8
130,101 + MPMX19_06859 0.45 -0.3
130,101 + MPMX19_06859 0.45 -1.1
130,101 + MPMX19_06859 0.45 -1.2
130,101 + MPMX19_06859 0.45 -1.0
130,101 + MPMX19_06859 0.45 -0.5
130,101 + MPMX19_06859 0.45 -1.0
130,101 + MPMX19_06859 0.45 +1.2
130,101 + MPMX19_06859 0.45 +0.2
130,101 + MPMX19_06859 0.45 +0.3
130,101 + MPMX19_06859 0.45 +0.2
130,101 + MPMX19_06859 0.45 -0.7
130,101 + MPMX19_06859 0.45 -0.9
130,102 - MPMX19_06859 0.45 +0.1
130,102 - MPMX19_06859 0.45 +0.9
130,102 - MPMX19_06859 0.45 +0.1
130,102 - MPMX19_06859 0.45 +0.8
130,102 - MPMX19_06859 0.45 -1.1
130,102 - MPMX19_06859 0.45 -1.1
130,102 - MPMX19_06859 0.45 -0.2
130,102 - MPMX19_06859 0.45 +0.6
130,102 - MPMX19_06859 0.45 +0.8
130,102 - MPMX19_06859 0.45 -0.1
130,102 - MPMX19_06859 0.45 -1.3
130,102 - MPMX19_06859 0.45 +0.2
130,102 - MPMX19_06859 0.45 +1.0
130,102 - MPMX19_06859 0.45 -1.1
130,102 - MPMX19_06859 0.45 -1.1
130,110 + MPMX19_06859 0.45 -1.7
130,110 + MPMX19_06859 0.45 -0.4
130,110 + MPMX19_06859 0.45 +0.2
130,110 + MPMX19_06859 0.45 -0.4
130,110 + MPMX19_06859 0.45 -0.4
130,110 + MPMX19_06859 0.45 -1.2
130,110 + MPMX19_06859 0.45 -0.4
130,111 - MPMX19_06859 0.45 +0.1
130,111 - MPMX19_06859 0.45 -0.7
130,111 - MPMX19_06859 0.45 -1.2
130,111 - MPMX19_06859 0.45 -0.0
130,111 - MPMX19_06859 0.45 -0.7
130,449 + MPMX19_06859 0.62 -0.9
130,449 + MPMX19_06859 0.62 +1.1
130,846 - MPMX19_06859 0.82 -1.2
130,846 - MPMX19_06859 0.82 -0.1
130,846 - MPMX19_06859 0.82 +0.6
130,846 - MPMX19_06859 0.82 -0.1
130,846 - MPMX19_06859 0.82 -0.5
130,875 + MPMX19_06859 0.84 -1.7
130,875 + MPMX19_06859 0.84 -1.0
130,875 + MPMX19_06859 0.84 +1.1
130,986 + MPMX19_06859 0.89 -1.7
130,987 - MPMX19_06859 0.89 -0.5
131,013 + -1.2
131,014 - +0.1
131,014 - +0.1
131,014 - -0.9
131,638 + -1.5
131,638 + -0.6
131,638 + -0.5
131,639 - +0.4
131,683 + MPMX19_06861 0.13 +1.3
131,683 + MPMX19_06861 0.13 +0.1
131,683 + MPMX19_06861 0.13 +0.7
131,683 + MPMX19_06861 0.13 +0.3
131,683 + MPMX19_06861 0.13 +0.1
131,683 + MPMX19_06861 0.13 -0.8
131,683 + MPMX19_06861 0.13 -0.2
131,684 - MPMX19_06861 0.13 -1.6
131,684 - MPMX19_06861 0.13 +1.6
131,684 - MPMX19_06861 0.13 -1.2
131,684 - MPMX19_06861 0.13 -0.8
131,839 + MPMX19_06861 0.24 -1.9
131,840 - MPMX19_06861 0.24 -0.5
131,914 + MPMX19_06861 0.30 -1.5
131,914 + MPMX19_06861 0.30 -0.9
131,915 - MPMX19_06861 0.30 -1.2
131,915 - MPMX19_06861 0.30 -0.8
131,915 - MPMX19_06861 0.30 -0.1
132,163 + MPMX19_06861 0.48 -0.6
132,163 + MPMX19_06861 0.48 +0.1
132,163 + MPMX19_06861 0.48 +0.8
132,163 + MPMX19_06861 0.48 +0.3
132,164 - MPMX19_06861 0.48 +1.0
132,164 - MPMX19_06861 0.48 -0.7

Or see this region's nucleotide sequence