Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06853 and MPMX19_06854 are separated by 49 nucleotides MPMX19_06854 and MPMX19_06855 are separated by 306 nucleotides
MPMX19_06853: MPMX19_06853 - Glyoxylate/hydroxypyruvate reductase A, at 121,336 to 122,259
_06853
MPMX19_06854: MPMX19_06854 - Acetylornithine deacetylase, at 122,309 to 123,433
_06854
MPMX19_06855: MPMX19_06855 - hypothetical protein, at 123,740 to 124,699
_06855
Position (kb)
122
123
124 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.440 kb on + strand, within MPMX19_06853 at 121.441 kb on - strand, within MPMX19_06853 at 121.441 kb on - strand, within MPMX19_06853 at 121.970 kb on + strand, within MPMX19_06853 at 121.970 kb on + strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 121.971 kb on - strand, within MPMX19_06853 at 122.135 kb on + strand, within MPMX19_06853 at 122.472 kb on + strand, within MPMX19_06854 at 122.472 kb on + strand, within MPMX19_06854 at 122.472 kb on + strand, within MPMX19_06854 at 122.472 kb on + strand, within MPMX19_06854 at 122.473 kb on - strand, within MPMX19_06854 at 122.473 kb on - strand, within MPMX19_06854 at 122.559 kb on + strand, within MPMX19_06854 at 122.559 kb on + strand, within MPMX19_06854 at 122.751 kb on + strand, within MPMX19_06854 at 122.751 kb on + strand, within MPMX19_06854 at 122.752 kb on - strand, within MPMX19_06854 at 123.042 kb on + strand, within MPMX19_06854 at 123.043 kb on - strand, within MPMX19_06854 at 123.243 kb on + strand, within MPMX19_06854 at 123.243 kb on + strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.244 kb on - strand, within MPMX19_06854 at 123.540 kb on + strand at 123.540 kb on + strand at 123.540 kb on + strand at 123.540 kb on + strand at 123.541 kb on - strand at 123.541 kb on - strand at 123.541 kb on - strand at 123.649 kb on + strand at 124.148 kb on + strand, within MPMX19_06855
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 121,440 + MPMX19_06853 0.11 -0.9 121,440 + MPMX19_06853 0.11 +2.2 121,440 + MPMX19_06853 0.11 -0.7 121,440 + MPMX19_06853 0.11 -0.6 121,440 + MPMX19_06853 0.11 +1.7 121,441 - MPMX19_06853 0.11 -1.4 121,441 - MPMX19_06853 0.11 +0.5 121,970 + MPMX19_06853 0.69 -1.0 121,970 + MPMX19_06853 0.69 -0.2 121,971 - MPMX19_06853 0.69 -0.9 121,971 - MPMX19_06853 0.69 -0.2 121,971 - MPMX19_06853 0.69 -0.7 122,135 + MPMX19_06853 0.86 -1.5 122,472 + MPMX19_06854 0.14 -0.1 122,472 + MPMX19_06854 0.14 -1.0 122,472 + MPMX19_06854 0.14 +1.5 122,472 + MPMX19_06854 0.14 -0.1 122,473 - MPMX19_06854 0.15 -0.6 122,473 - MPMX19_06854 0.15 +0.7 122,559 + MPMX19_06854 0.22 -1.4 122,559 + MPMX19_06854 0.22 -1.5 122,751 + MPMX19_06854 0.39 -1.1 122,751 + MPMX19_06854 0.39 -0.9 122,752 - MPMX19_06854 0.39 -1.4 123,042 + MPMX19_06854 0.65 +0.4 123,043 - MPMX19_06854 0.65 +0.5 123,243 + MPMX19_06854 0.83 +1.0 123,243 + MPMX19_06854 0.83 +0.9 123,244 - MPMX19_06854 0.83 -1.9 123,244 - MPMX19_06854 0.83 -1.7 123,244 - MPMX19_06854 0.83 +0.5 123,244 - MPMX19_06854 0.83 -0.4 123,540 + -0.1 123,540 + -1.7 123,540 + -0.9 123,540 + -0.7 123,541 - -0.7 123,541 - -0.4 123,541 - -0.7 123,649 + +0.1 124,148 + MPMX19_06855 0.42 -0.4
Or see this region's nucleotide sequence