Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06830

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06828 and MPMX19_06829 overlap by 13 nucleotidesMPMX19_06829 and MPMX19_06830 overlap by 4 nucleotidesMPMX19_06830 and MPMX19_06831 are separated by 41 nucleotidesMPMX19_06831 and MPMX19_06832 are separated by 112 nucleotides MPMX19_06828: MPMX19_06828 - Delta(1)-pyrroline-2-carboxylate reductase, at 93,849 to 94,853 _06828 MPMX19_06829: MPMX19_06829 - hypothetical protein, at 94,841 to 95,827 _06829 MPMX19_06830: MPMX19_06830 - Maleate isomerase, at 95,824 to 96,609 _06830 MPMX19_06831: MPMX19_06831 - putative amino-acid permease protein YxeN, at 96,651 to 97,307 _06831 MPMX19_06832: MPMX19_06832 - L-cystine transport system permease protein YecS, at 97,420 to 98,079 _06832 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 96.149 kb on + strand, within MPMX19_06830at 96.149 kb on + strand, within MPMX19_06830at 96.150 kb on - strand, within MPMX19_06830at 96.182 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.339 kb on - strand, within MPMX19_06830at 96.339 kb on - strand, within MPMX19_06830at 96.339 kb on - strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.754 kb on + strand, within MPMX19_06831at 96.755 kb on - strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.761 kb on - strand, within MPMX19_06831at 96.761 kb on - strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.853 kb on + strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.854 kb on - strand, within MPMX19_06831at 96.920 kb on - strand, within MPMX19_06831at 97.003 kb on + strand, within MPMX19_06831at 97.003 kb on + strand, within MPMX19_06831at 97.003 kb on + strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.004 kb on - strand, within MPMX19_06831at 97.012 kb on + strand, within MPMX19_06831at 97.012 kb on + strand, within MPMX19_06831at 97.081 kb on + strand, within MPMX19_06831at 97.081 kb on + strand, within MPMX19_06831at 97.082 kb on - strand, within MPMX19_06831at 97.082 kb on - strand, within MPMX19_06831at 97.093 kb on + strand, within MPMX19_06831at 97.093 kb on + strand, within MPMX19_06831at 97.094 kb on - strand, within MPMX19_06831at 97.320 kb on + strandat 97.320 kb on + strandat 97.321 kb on - strandat 97.381 kb on + strandat 97.381 kb on + strandat 97.382 kb on - strandat 97.403 kb on + strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.404 kb on - strandat 97.422 kb on - strandat 97.422 kb on - strandat 97.497 kb on - strand, within MPMX19_06832at 97.497 kb on - strand, within MPMX19_06832at 97.497 kb on - strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.505 kb on + strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832at 97.506 kb on - strand, within MPMX19_06832

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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95,905 + MPMX19_06830 0.10 +0.2
95,905 + MPMX19_06830 0.10 -0.6
95,905 + MPMX19_06830 0.10 +0.9
95,905 + MPMX19_06830 0.10 -0.7
95,905 + MPMX19_06830 0.10 -0.2
95,905 + MPMX19_06830 0.10 -0.1
95,906 - MPMX19_06830 0.10 +0.3
95,906 - MPMX19_06830 0.10 -0.5
95,906 - MPMX19_06830 0.10 -0.7
95,906 - MPMX19_06830 0.10 -1.5
96,149 + MPMX19_06830 0.41 -0.8
96,149 + MPMX19_06830 0.41 +0.8
96,150 - MPMX19_06830 0.41 +0.4
96,182 + MPMX19_06830 0.46 -1.4
96,338 + MPMX19_06830 0.65 +1.7
96,338 + MPMX19_06830 0.65 +0.0
96,338 + MPMX19_06830 0.65 -1.3
96,338 + MPMX19_06830 0.65 +1.2
96,338 + MPMX19_06830 0.65 +0.1
96,338 + MPMX19_06830 0.65 -1.3
96,339 - MPMX19_06830 0.66 +1.1
96,339 - MPMX19_06830 0.66 +0.5
96,339 - MPMX19_06830 0.66 +0.9
96,458 + MPMX19_06830 0.81 +1.3
96,458 + MPMX19_06830 0.81 +1.6
96,458 + MPMX19_06830 0.81 +0.5
96,459 - MPMX19_06830 0.81 +0.5
96,459 - MPMX19_06830 0.81 +0.3
96,459 - MPMX19_06830 0.81 +0.1
96,459 - MPMX19_06830 0.81 -0.3
96,459 - MPMX19_06830 0.81 -0.4
96,459 - MPMX19_06830 0.81 +0.9
96,459 - MPMX19_06830 0.81 -0.7
96,459 - MPMX19_06830 0.81 -1.7
96,754 + MPMX19_06831 0.16 -0.0
96,755 - MPMX19_06831 0.16 -0.7
96,760 + MPMX19_06831 0.17 +1.1
96,760 + MPMX19_06831 0.17 -1.2
96,760 + MPMX19_06831 0.17 +0.9
96,760 + MPMX19_06831 0.17 -0.3
96,761 - MPMX19_06831 0.17 -0.7
96,761 - MPMX19_06831 0.17 +0.6
96,853 + MPMX19_06831 0.31 -1.9
96,853 + MPMX19_06831 0.31 -0.9
96,853 + MPMX19_06831 0.31 -1.4
96,853 + MPMX19_06831 0.31 -1.4
96,853 + MPMX19_06831 0.31 -0.1
96,853 + MPMX19_06831 0.31 +0.6
96,853 + MPMX19_06831 0.31 -1.3
96,853 + MPMX19_06831 0.31 +0.9
96,853 + MPMX19_06831 0.31 -0.1
96,853 + MPMX19_06831 0.31 -1.2
96,854 - MPMX19_06831 0.31 -1.1
96,854 - MPMX19_06831 0.31 -0.1
96,854 - MPMX19_06831 0.31 -0.4
96,854 - MPMX19_06831 0.31 -1.1
96,854 - MPMX19_06831 0.31 -0.1
96,854 - MPMX19_06831 0.31 -1.0
96,920 - MPMX19_06831 0.41 +0.3
97,003 + MPMX19_06831 0.54 -2.0
97,003 + MPMX19_06831 0.54 -1.4
97,003 + MPMX19_06831 0.54 +0.3
97,004 - MPMX19_06831 0.54 -0.1
97,004 - MPMX19_06831 0.54 -0.8
97,004 - MPMX19_06831 0.54 -0.5
97,004 - MPMX19_06831 0.54 +1.2
97,004 - MPMX19_06831 0.54 -1.7
97,004 - MPMX19_06831 0.54 -0.0
97,012 + MPMX19_06831 0.55 -0.9
97,012 + MPMX19_06831 0.55 -0.4
97,081 + MPMX19_06831 0.65 -0.3
97,081 + MPMX19_06831 0.65 -1.5
97,082 - MPMX19_06831 0.66 -0.6
97,082 - MPMX19_06831 0.66 -0.4
97,093 + MPMX19_06831 0.67 +0.3
97,093 + MPMX19_06831 0.67 -0.5
97,094 - MPMX19_06831 0.67 -0.7
97,320 + -0.4
97,320 + +0.1
97,321 - +0.4
97,381 + +0.9
97,381 + +0.0
97,382 - -0.4
97,403 + -0.1
97,404 - -0.9
97,404 - +0.9
97,404 - +0.9
97,404 - -0.9
97,422 - +0.1
97,422 - +1.6
97,497 - MPMX19_06832 0.12 +1.3
97,497 - MPMX19_06832 0.12 -0.7
97,497 - MPMX19_06832 0.12 -0.3
97,505 + MPMX19_06832 0.13 -0.0
97,505 + MPMX19_06832 0.13 -1.7
97,505 + MPMX19_06832 0.13 +0.5
97,505 + MPMX19_06832 0.13 +0.6
97,505 + MPMX19_06832 0.13 +0.1
97,505 + MPMX19_06832 0.13 +0.8
97,506 - MPMX19_06832 0.13 +1.2
97,506 - MPMX19_06832 0.13 -1.1
97,506 - MPMX19_06832 0.13 -1.0
97,506 - MPMX19_06832 0.13 -0.7
97,506 - MPMX19_06832 0.13 -0.0
97,506 - MPMX19_06832 0.13 -1.0
97,506 - MPMX19_06832 0.13 -0.8

Or see this region's nucleotide sequence