Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06829

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06828 and MPMX19_06829 overlap by 13 nucleotidesMPMX19_06829 and MPMX19_06830 overlap by 4 nucleotidesMPMX19_06830 and MPMX19_06831 are separated by 41 nucleotides MPMX19_06828: MPMX19_06828 - Delta(1)-pyrroline-2-carboxylate reductase, at 93,849 to 94,853 _06828 MPMX19_06829: MPMX19_06829 - hypothetical protein, at 94,841 to 95,827 _06829 MPMX19_06830: MPMX19_06830 - Maleate isomerase, at 95,824 to 96,609 _06830 MPMX19_06831: MPMX19_06831 - putative amino-acid permease protein YxeN, at 96,651 to 97,307 _06831 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.692 kb on - strand, within MPMX19_06828at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.905 kb on + strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 95.906 kb on - strand, within MPMX19_06830at 96.149 kb on + strand, within MPMX19_06830at 96.149 kb on + strand, within MPMX19_06830at 96.150 kb on - strand, within MPMX19_06830at 96.182 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.338 kb on + strand, within MPMX19_06830at 96.339 kb on - strand, within MPMX19_06830at 96.339 kb on - strand, within MPMX19_06830at 96.339 kb on - strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.458 kb on + strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.459 kb on - strand, within MPMX19_06830at 96.754 kb on + strand, within MPMX19_06831at 96.755 kb on - strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.760 kb on + strand, within MPMX19_06831at 96.761 kb on - strand, within MPMX19_06831at 96.761 kb on - strand, within MPMX19_06831

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
94,102 + MPMX19_06828 0.25 -0.7
94,102 + MPMX19_06828 0.25 -1.4
94,102 + MPMX19_06828 0.25 -1.0
94,102 + MPMX19_06828 0.25 +0.5
94,102 + MPMX19_06828 0.25 -0.4
94,102 + MPMX19_06828 0.25 -0.6
94,103 - MPMX19_06828 0.25 -0.8
94,103 - MPMX19_06828 0.25 +1.3
94,103 - MPMX19_06828 0.25 -0.9
94,103 - MPMX19_06828 0.25 -1.1
94,660 + MPMX19_06828 0.81 -1.3
94,660 + MPMX19_06828 0.81 -0.4
94,660 + MPMX19_06828 0.81 -0.9
94,660 + MPMX19_06828 0.81 -0.7
94,660 + MPMX19_06828 0.81 -1.5
94,660 + MPMX19_06828 0.81 -0.9
94,660 + MPMX19_06828 0.81 +1.3
94,660 + MPMX19_06828 0.81 -0.9
94,661 - MPMX19_06828 0.81 +0.1
94,661 - MPMX19_06828 0.81 +0.8
94,661 - MPMX19_06828 0.81 -0.0
94,661 - MPMX19_06828 0.81 -0.4
94,661 - MPMX19_06828 0.81 -0.2
94,661 - MPMX19_06828 0.81 -1.2
94,661 - MPMX19_06828 0.81 -0.2
94,661 - MPMX19_06828 0.81 -0.7
94,661 - MPMX19_06828 0.81 +0.2
94,661 - MPMX19_06828 0.81 -1.1
94,661 - MPMX19_06828 0.81 -0.1
94,661 - MPMX19_06828 0.81 -1.8
94,661 - MPMX19_06828 0.81 -0.6
94,661 - MPMX19_06828 0.81 -1.6
94,692 - MPMX19_06828 0.84 -0.4
95,905 + MPMX19_06830 0.10 +0.2
95,905 + MPMX19_06830 0.10 -0.6
95,905 + MPMX19_06830 0.10 +0.9
95,905 + MPMX19_06830 0.10 -0.7
95,905 + MPMX19_06830 0.10 -0.2
95,905 + MPMX19_06830 0.10 -0.1
95,906 - MPMX19_06830 0.10 +0.3
95,906 - MPMX19_06830 0.10 -0.5
95,906 - MPMX19_06830 0.10 -0.7
95,906 - MPMX19_06830 0.10 -1.5
96,149 + MPMX19_06830 0.41 -0.8
96,149 + MPMX19_06830 0.41 +0.8
96,150 - MPMX19_06830 0.41 +0.4
96,182 + MPMX19_06830 0.46 -1.4
96,338 + MPMX19_06830 0.65 +1.7
96,338 + MPMX19_06830 0.65 +0.0
96,338 + MPMX19_06830 0.65 -1.3
96,338 + MPMX19_06830 0.65 +1.2
96,338 + MPMX19_06830 0.65 +0.1
96,338 + MPMX19_06830 0.65 -1.3
96,339 - MPMX19_06830 0.66 +1.1
96,339 - MPMX19_06830 0.66 +0.5
96,339 - MPMX19_06830 0.66 +0.9
96,458 + MPMX19_06830 0.81 +1.3
96,458 + MPMX19_06830 0.81 +1.6
96,458 + MPMX19_06830 0.81 +0.5
96,459 - MPMX19_06830 0.81 +0.5
96,459 - MPMX19_06830 0.81 +0.3
96,459 - MPMX19_06830 0.81 +0.1
96,459 - MPMX19_06830 0.81 -0.3
96,459 - MPMX19_06830 0.81 -0.4
96,459 - MPMX19_06830 0.81 +0.9
96,459 - MPMX19_06830 0.81 -0.7
96,459 - MPMX19_06830 0.81 -1.7
96,754 + MPMX19_06831 0.16 -0.0
96,755 - MPMX19_06831 0.16 -0.7
96,760 + MPMX19_06831 0.17 +1.1
96,760 + MPMX19_06831 0.17 -1.2
96,760 + MPMX19_06831 0.17 +0.9
96,760 + MPMX19_06831 0.17 -0.3
96,761 - MPMX19_06831 0.17 -0.7
96,761 - MPMX19_06831 0.17 +0.6

Or see this region's nucleotide sequence