Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06823 and MPMX19_06824 are separated by 36 nucleotides MPMX19_06824 and MPMX19_06825 are separated by 257 nucleotides
MPMX19_06823: MPMX19_06823 - (Z)-2-((N-methylformamido)methylene)-5- hydroxybutyrolactone dehydrogenase, at 87,767 to 89,278
_06823
MPMX19_06824: MPMX19_06824 - Flavin-dependent trigonelline monooxygenase, reductase component, at 89,315 to 90,337
_06824
MPMX19_06825: MPMX19_06825 - hypothetical protein, at 90,595 to 91,443
_06825
Position (kb) 89
90
91 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 88.362 kb on + strand, within MPMX19_06823 at 88.362 kb on + strand, within MPMX19_06823 at 88.362 kb on + strand, within MPMX19_06823 at 88.362 kb on + strand, within MPMX19_06823 at 88.363 kb on - strand, within MPMX19_06823 at 88.363 kb on - strand, within MPMX19_06823 at 88.363 kb on - strand, within MPMX19_06823 at 88.363 kb on - strand, within MPMX19_06823 at 88.363 kb on - strand, within MPMX19_06823 at 88.914 kb on + strand, within MPMX19_06823 at 88.914 kb on + strand, within MPMX19_06823 at 88.914 kb on + strand, within MPMX19_06823 at 88.914 kb on + strand, within MPMX19_06823 at 88.915 kb on - strand, within MPMX19_06823 at 88.915 kb on - strand, within MPMX19_06823 at 88.915 kb on - strand, within MPMX19_06823 at 88.915 kb on - strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.920 kb on + strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 88.921 kb on - strand, within MPMX19_06823 at 89.154 kb on + strand at 89.154 kb on + strand at 89.181 kb on + strand at 89.182 kb on - strand at 89.182 kb on - strand at 89.182 kb on - strand at 89.182 kb on - strand at 89.193 kb on + strand at 89.193 kb on + strand at 89.193 kb on + strand at 89.194 kb on - strand at 89.194 kb on - strand at 89.194 kb on - strand at 89.232 kb on + strand at 89.232 kb on + strand at 89.232 kb on + strand at 89.232 kb on + strand at 89.232 kb on + strand at 89.232 kb on + strand at 89.232 kb on + strand at 89.232 kb on + strand at 89.232 kb on + strand at 89.233 kb on - strand at 89.233 kb on - strand at 89.233 kb on - strand at 89.233 kb on - strand at 89.233 kb on - strand at 89.233 kb on - strand at 89.289 kb on + strand at 89.400 kb on + strand at 89.400 kb on + strand at 89.400 kb on + strand at 89.400 kb on + strand at 89.400 kb on + strand at 89.401 kb on - strand at 89.401 kb on - strand at 89.436 kb on + strand, within MPMX19_06824 at 89.436 kb on + strand, within MPMX19_06824 at 89.436 kb on + strand, within MPMX19_06824 at 89.437 kb on - strand, within MPMX19_06824 at 89.437 kb on - strand, within MPMX19_06824 at 89.437 kb on - strand, within MPMX19_06824 at 89.437 kb on - strand, within MPMX19_06824 at 89.563 kb on - strand, within MPMX19_06824 at 89.563 kb on - strand, within MPMX19_06824 at 89.607 kb on + strand, within MPMX19_06824 at 90.119 kb on - strand, within MPMX19_06824 at 90.256 kb on + strand at 90.256 kb on + strand at 90.257 kb on - strand at 90.257 kb on - strand at 90.369 kb on + strand at 90.370 kb on - strand at 90.402 kb on - strand at 90.770 kb on + strand, within MPMX19_06825 at 90.770 kb on + strand, within MPMX19_06825 at 90.771 kb on - strand, within MPMX19_06825 at 90.771 kb on - strand, within MPMX19_06825 at 90.771 kb on - strand, within MPMX19_06825 at 90.863 kb on + strand, within MPMX19_06825 at 90.863 kb on + strand, within MPMX19_06825 at 90.863 kb on + strand, within MPMX19_06825 at 90.864 kb on - strand, within MPMX19_06825 at 90.864 kb on - strand, within MPMX19_06825 at 90.864 kb on - strand, within MPMX19_06825 at 91.025 kb on + strand, within MPMX19_06825 at 91.025 kb on + strand, within MPMX19_06825 at 91.025 kb on + strand, within MPMX19_06825 at 91.025 kb on + strand, within MPMX19_06825 at 91.025 kb on + strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.097 kb on + strand, within MPMX19_06825 at 91.097 kb on + strand, within MPMX19_06825 at 91.097 kb on + strand, within MPMX19_06825 at 91.097 kb on + strand, within MPMX19_06825 at 91.097 kb on + strand, within MPMX19_06825 at 91.098 kb on - strand, within MPMX19_06825 at 91.098 kb on - strand, within MPMX19_06825 at 91.098 kb on - strand, within MPMX19_06825 at 91.191 kb on - strand, within MPMX19_06825 at 91.298 kb on + strand, within MPMX19_06825 at 91.298 kb on + strand, within MPMX19_06825 at 91.299 kb on - strand, within MPMX19_06825 at 91.299 kb on - strand, within MPMX19_06825 at 91.299 kb on - strand, within MPMX19_06825
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 88,362 + MPMX19_06823 0.39 -0.2 88,362 + MPMX19_06823 0.39 -0.3 88,362 + MPMX19_06823 0.39 +1.1 88,362 + MPMX19_06823 0.39 +0.7 88,363 - MPMX19_06823 0.39 +0.8 88,363 - MPMX19_06823 0.39 +0.4 88,363 - MPMX19_06823 0.39 -1.0 88,363 - MPMX19_06823 0.39 -0.8 88,363 - MPMX19_06823 0.39 -0.5 88,914 + MPMX19_06823 0.76 -0.6 88,914 + MPMX19_06823 0.76 -0.4 88,914 + MPMX19_06823 0.76 -0.9 88,914 + MPMX19_06823 0.76 -1.2 88,915 - MPMX19_06823 0.76 -0.7 88,915 - MPMX19_06823 0.76 -1.2 88,915 - MPMX19_06823 0.76 -0.2 88,915 - MPMX19_06823 0.76 -0.7 88,920 + MPMX19_06823 0.76 +0.8 88,920 + MPMX19_06823 0.76 -0.5 88,920 + MPMX19_06823 0.76 -0.6 88,920 + MPMX19_06823 0.76 -0.9 88,920 + MPMX19_06823 0.76 +0.6 88,920 + MPMX19_06823 0.76 -0.6 88,920 + MPMX19_06823 0.76 -1.3 88,920 + MPMX19_06823 0.76 +0.3 88,920 + MPMX19_06823 0.76 -0.2 88,920 + MPMX19_06823 0.76 -1.0 88,920 + MPMX19_06823 0.76 -0.5 88,920 + MPMX19_06823 0.76 +0.6 88,920 + MPMX19_06823 0.76 -1.2 88,921 - MPMX19_06823 0.76 -0.1 88,921 - MPMX19_06823 0.76 -1.2 88,921 - MPMX19_06823 0.76 -0.7 88,921 - MPMX19_06823 0.76 -0.5 88,921 - MPMX19_06823 0.76 -0.9 88,921 - MPMX19_06823 0.76 -0.2 88,921 - MPMX19_06823 0.76 -1.2 88,921 - MPMX19_06823 0.76 -1.4 88,921 - MPMX19_06823 0.76 -1.1 88,921 - MPMX19_06823 0.76 -0.2 88,921 - MPMX19_06823 0.76 +2.2 88,921 - MPMX19_06823 0.76 -0.3 88,921 - MPMX19_06823 0.76 -1.2 88,921 - MPMX19_06823 0.76 -2.6 88,921 - MPMX19_06823 0.76 +0.9 88,921 - MPMX19_06823 0.76 +0.1 88,921 - MPMX19_06823 0.76 +0.7 88,921 - MPMX19_06823 0.76 +0.9 88,921 - MPMX19_06823 0.76 +1.1 89,154 + +0.0 89,154 + -0.9 89,181 + -1.0 89,182 - +1.8 89,182 - -1.2 89,182 - -1.1 89,182 - -0.1 89,193 + -1.3 89,193 + -2.1 89,193 + -1.4 89,194 - -0.7 89,194 - -0.1 89,194 - -0.9 89,232 + +0.7 89,232 + +0.4 89,232 + -0.4 89,232 + +0.0 89,232 + -1.3 89,232 + -1.0 89,232 + +0.8 89,232 + +0.1 89,232 + -2.6 89,233 - -1.2 89,233 - -0.3 89,233 - +0.1 89,233 - +0.9 89,233 - +0.3 89,233 - -1.4 89,289 + -0.4 89,400 + +0.7 89,400 + -0.3 89,400 + +0.6 89,400 + -0.9 89,400 + -0.1 89,401 - -0.0 89,401 - +0.1 89,436 + MPMX19_06824 0.12 +0.1 89,436 + MPMX19_06824 0.12 -0.6 89,436 + MPMX19_06824 0.12 -0.8 89,437 - MPMX19_06824 0.12 -1.3 89,437 - MPMX19_06824 0.12 -1.1 89,437 - MPMX19_06824 0.12 -1.0 89,437 - MPMX19_06824 0.12 -2.2 89,563 - MPMX19_06824 0.24 +0.6 89,563 - MPMX19_06824 0.24 +0.3 89,607 + MPMX19_06824 0.29 -1.4 90,119 - MPMX19_06824 0.79 +0.6 90,256 + +0.0 90,256 + -0.1 90,257 - -0.9 90,257 - +0.2 90,369 + +0.0 90,370 - -0.6 90,402 - +0.3 90,770 + MPMX19_06825 0.21 -1.2 90,770 + MPMX19_06825 0.21 +0.3 90,771 - MPMX19_06825 0.21 -1.7 90,771 - MPMX19_06825 0.21 +0.9 90,771 - MPMX19_06825 0.21 -2.2 90,863 + MPMX19_06825 0.32 +1.1 90,863 + MPMX19_06825 0.32 -0.2 90,863 + MPMX19_06825 0.32 -0.5 90,864 - MPMX19_06825 0.32 -1.2 90,864 - MPMX19_06825 0.32 +0.6 90,864 - MPMX19_06825 0.32 +0.3 91,025 + MPMX19_06825 0.51 -0.1 91,025 + MPMX19_06825 0.51 -0.7 91,025 + MPMX19_06825 0.51 +0.9 91,025 + MPMX19_06825 0.51 -0.1 91,025 + MPMX19_06825 0.51 +1.4 91,026 - MPMX19_06825 0.51 +0.9 91,026 - MPMX19_06825 0.51 +0.6 91,026 - MPMX19_06825 0.51 +0.1 91,026 - MPMX19_06825 0.51 -1.0 91,026 - MPMX19_06825 0.51 -0.3 91,026 - MPMX19_06825 0.51 +0.6 91,026 - MPMX19_06825 0.51 -0.1 91,097 + MPMX19_06825 0.59 -0.7 91,097 + MPMX19_06825 0.59 -1.1 91,097 + MPMX19_06825 0.59 +0.2 91,097 + MPMX19_06825 0.59 +0.5 91,097 + MPMX19_06825 0.59 -0.7 91,098 - MPMX19_06825 0.59 -0.4 91,098 - MPMX19_06825 0.59 -0.1 91,098 - MPMX19_06825 0.59 -1.3 91,191 - MPMX19_06825 0.70 -1.1 91,298 + MPMX19_06825 0.83 -0.3 91,298 + MPMX19_06825 0.83 -1.5 91,299 - MPMX19_06825 0.83 -0.5 91,299 - MPMX19_06825 0.83 -3.6 91,299 - MPMX19_06825 0.83 +0.2
Or see this region's nucleotide sequence