Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06809

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06808 and MPMX19_06809 are separated by 103 nucleotidesMPMX19_06809 and MPMX19_06810 are separated by 269 nucleotides MPMX19_06808: MPMX19_06808 - HTH-type transcriptional regulator DmlR, at 73,006 to 73,947 _06808 MPMX19_06809: MPMX19_06809 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 74,051 to 74,854 _06809 MPMX19_06810: MPMX19_06810 - hypothetical protein, at 75,124 to 76,392 _06810 Position (kb) 74 75Strain fitness (log2 ratio) -2 -1 0 1 2 3at 73.166 kb on + strand, within MPMX19_06808at 73.167 kb on - strand, within MPMX19_06808at 73.167 kb on - strand, within MPMX19_06808at 73.167 kb on - strand, within MPMX19_06808at 73.433 kb on + strand, within MPMX19_06808at 73.433 kb on + strand, within MPMX19_06808at 73.434 kb on - strand, within MPMX19_06808at 73.434 kb on - strand, within MPMX19_06808at 73.651 kb on - strand, within MPMX19_06808at 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.926 kb on + strandat 73.927 kb on - strandat 73.927 kb on - strandat 73.927 kb on - strandat 73.927 kb on - strandat 73.927 kb on - strandat 73.927 kb on - strandat 73.966 kb on + strandat 73.966 kb on + strandat 73.966 kb on + strandat 73.967 kb on - strandat 73.967 kb on - strandat 73.967 kb on - strandat 73.987 kb on + strandat 73.987 kb on + strandat 73.987 kb on + strandat 73.987 kb on + strandat 73.988 kb on - strandat 73.988 kb on - strandat 73.988 kb on - strandat 73.988 kb on - strandat 73.990 kb on - strandat 74.012 kb on + strandat 74.012 kb on + strandat 74.012 kb on + strandat 74.012 kb on + strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.013 kb on - strandat 74.168 kb on + strand, within MPMX19_06809at 74.168 kb on + strand, within MPMX19_06809at 74.168 kb on + strand, within MPMX19_06809at 74.168 kb on + strand, within MPMX19_06809at 74.169 kb on - strand, within MPMX19_06809at 74.169 kb on - strand, within MPMX19_06809at 74.173 kb on + strand, within MPMX19_06809at 74.399 kb on + strand, within MPMX19_06809at 74.400 kb on - strand, within MPMX19_06809at 74.400 kb on - strand, within MPMX19_06809at 74.400 kb on - strand, within MPMX19_06809at 74.417 kb on + strand, within MPMX19_06809at 74.418 kb on - strand, within MPMX19_06809at 74.418 kb on - strand, within MPMX19_06809at 74.503 kb on - strand, within MPMX19_06809at 74.529 kb on - strand, within MPMX19_06809at 74.597 kb on + strand, within MPMX19_06809at 74.606 kb on + strand, within MPMX19_06809at 74.606 kb on + strand, within MPMX19_06809at 74.607 kb on - strand, within MPMX19_06809at 74.633 kb on + strand, within MPMX19_06809at 74.633 kb on + strand, within MPMX19_06809at 74.633 kb on + strand, within MPMX19_06809at 74.753 kb on + strand, within MPMX19_06809at 74.754 kb on - strand, within MPMX19_06809at 74.754 kb on - strand, within MPMX19_06809at 74.825 kb on - strandat 74.917 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.957 kb on + strandat 74.958 kb on - strandat 74.958 kb on - strandat 75.355 kb on + strand, within MPMX19_06810at 75.355 kb on + strand, within MPMX19_06810at 75.356 kb on - strand, within MPMX19_06810at 75.356 kb on - strand, within MPMX19_06810at 75.356 kb on - strand, within MPMX19_06810at 75.604 kb on + strand, within MPMX19_06810at 75.604 kb on + strand, within MPMX19_06810at 75.605 kb on - strand, within MPMX19_06810at 75.605 kb on - strand, within MPMX19_06810at 75.605 kb on - strand, within MPMX19_06810at 75.676 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.724 kb on + strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.725 kb on - strand, within MPMX19_06810at 75.778 kb on + strand, within MPMX19_06810at 75.779 kb on - strand, within MPMX19_06810at 75.841 kb on + strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
73,166 + MPMX19_06808 0.17 +1.3
73,167 - MPMX19_06808 0.17 -2.5
73,167 - MPMX19_06808 0.17 +1.6
73,167 - MPMX19_06808 0.17 +1.3
73,433 + MPMX19_06808 0.45 -0.7
73,433 + MPMX19_06808 0.45 -0.2
73,434 - MPMX19_06808 0.45 +1.3
73,434 - MPMX19_06808 0.45 +0.5
73,651 - MPMX19_06808 0.68 +0.9
73,926 + +0.3
73,926 + -0.1
73,926 + +0.2
73,926 + +0.1
73,926 + -2.2
73,926 + -0.1
73,926 + -0.2
73,926 + -0.1
73,926 + -1.1
73,926 + +0.4
73,926 + -1.2
73,927 - -0.1
73,927 - -0.4
73,927 - -0.9
73,927 - +0.7
73,927 - -0.4
73,927 - +0.3
73,966 + -1.6
73,966 + -0.8
73,966 + -1.9
73,967 - -0.1
73,967 - +0.3
73,967 - -1.2
73,987 + -0.5
73,987 + +0.1
73,987 + -0.8
73,987 + -0.2
73,988 - -0.7
73,988 - +0.5
73,988 - -0.4
73,988 - -0.0
73,990 - -1.9
74,012 + -1.7
74,012 + -0.2
74,012 + -0.9
74,012 + -0.0
74,013 - -0.8
74,013 - +0.3
74,013 - +0.0
74,013 - -1.2
74,013 - -0.7
74,013 - -0.1
74,013 - +0.0
74,013 - +0.4
74,013 - -0.2
74,168 + MPMX19_06809 0.15 -1.7
74,168 + MPMX19_06809 0.15 +0.5
74,168 + MPMX19_06809 0.15 +0.3
74,168 + MPMX19_06809 0.15 +0.0
74,169 - MPMX19_06809 0.15 +0.5
74,169 - MPMX19_06809 0.15 -0.6
74,173 + MPMX19_06809 0.15 +0.8
74,399 + MPMX19_06809 0.43 +0.9
74,400 - MPMX19_06809 0.43 -0.5
74,400 - MPMX19_06809 0.43 +0.1
74,400 - MPMX19_06809 0.43 +1.3
74,417 + MPMX19_06809 0.46 +0.9
74,418 - MPMX19_06809 0.46 +0.1
74,418 - MPMX19_06809 0.46 +0.2
74,503 - MPMX19_06809 0.56 -0.2
74,529 - MPMX19_06809 0.59 -0.3
74,597 + MPMX19_06809 0.68 -0.6
74,606 + MPMX19_06809 0.69 -0.3
74,606 + MPMX19_06809 0.69 -0.7
74,607 - MPMX19_06809 0.69 -0.4
74,633 + MPMX19_06809 0.72 -0.4
74,633 + MPMX19_06809 0.72 -0.4
74,633 + MPMX19_06809 0.72 -2.0
74,753 + MPMX19_06809 0.87 +0.3
74,754 - MPMX19_06809 0.87 -0.7
74,754 - MPMX19_06809 0.87 +0.6
74,825 - -0.1
74,917 + -0.7
74,957 + -0.7
74,957 + +0.3
74,957 + +0.6
74,957 + -1.5
74,957 + +0.4
74,957 + +0.3
74,957 + -0.4
74,957 + -0.2
74,957 + -0.8
74,958 - -1.9
74,958 - -1.7
75,355 + MPMX19_06810 0.18 -0.5
75,355 + MPMX19_06810 0.18 +0.0
75,356 - MPMX19_06810 0.18 -2.4
75,356 - MPMX19_06810 0.18 -0.1
75,356 - MPMX19_06810 0.18 +1.9
75,604 + MPMX19_06810 0.38 -0.9
75,604 + MPMX19_06810 0.38 -1.1
75,605 - MPMX19_06810 0.38 +1.4
75,605 - MPMX19_06810 0.38 -0.4
75,605 - MPMX19_06810 0.38 +0.1
75,676 + MPMX19_06810 0.43 -0.7
75,724 + MPMX19_06810 0.47 -1.0
75,724 + MPMX19_06810 0.47 -1.1
75,724 + MPMX19_06810 0.47 -0.6
75,724 + MPMX19_06810 0.47 -2.2
75,725 - MPMX19_06810 0.47 -0.1
75,725 - MPMX19_06810 0.47 -0.7
75,725 - MPMX19_06810 0.47 +0.1
75,725 - MPMX19_06810 0.47 +0.3
75,725 - MPMX19_06810 0.47 -0.5
75,725 - MPMX19_06810 0.47 -0.8
75,725 - MPMX19_06810 0.47 +1.2
75,778 + MPMX19_06810 0.52 -1.2
75,779 - MPMX19_06810 0.52 +0.6
75,841 + MPMX19_06810 0.57 +0.6
75,842 - MPMX19_06810 0.57 -0.4
75,842 - MPMX19_06810 0.57 +0.6
75,842 - MPMX19_06810 0.57 -1.1
75,842 - MPMX19_06810 0.57 +3.2
75,842 - MPMX19_06810 0.57 +0.2
75,842 - MPMX19_06810 0.57 +1.9

Or see this region's nucleotide sequence