Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06806

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06805 and MPMX19_06806 are separated by 82 nucleotidesMPMX19_06806 and MPMX19_06807 are separated by 58 nucleotides MPMX19_06805: MPMX19_06805 - hypothetical protein, at 69,755 to 70,840 _06805 MPMX19_06806: MPMX19_06806 - Decarboxylase NovR, at 70,923 to 71,693 _06806 MPMX19_06807: MPMX19_06807 - Solute-binding protein, at 71,752 to 72,792 _06807 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 70.133 kb on - strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.934 kb on - strandat 70.934 kb on - strandat 70.934 kb on - strandat 70.934 kb on - strandat 70.934 kb on - strandat 70.996 kb on + strandat 70.997 kb on - strandat 71.261 kb on - strand, within MPMX19_06806at 71.275 kb on + strand, within MPMX19_06806at 71.290 kb on + strand, within MPMX19_06806at 71.290 kb on + strand, within MPMX19_06806at 71.290 kb on + strand, within MPMX19_06806at 71.290 kb on + strand, within MPMX19_06806at 71.291 kb on - strand, within MPMX19_06806at 71.500 kb on + strand, within MPMX19_06806at 71.500 kb on + strand, within MPMX19_06806at 71.500 kb on + strand, within MPMX19_06806at 71.501 kb on - strand, within MPMX19_06806at 71.501 kb on - strand, within MPMX19_06806at 71.569 kb on + strand, within MPMX19_06806at 71.569 kb on + strand, within MPMX19_06806at 71.569 kb on + strand, within MPMX19_06806at 71.569 kb on + strand, within MPMX19_06806at 71.570 kb on - strand, within MPMX19_06806at 71.570 kb on - strand, within MPMX19_06806at 71.570 kb on - strand, within MPMX19_06806at 71.608 kb on + strand, within MPMX19_06806at 71.674 kb on + strandat 71.675 kb on - strandat 71.719 kb on + strandat 71.719 kb on + strandat 71.719 kb on + strandat 71.719 kb on + strandat 71.720 kb on - strandat 71.750 kb on + strandat 71.876 kb on + strand, within MPMX19_06807at 71.876 kb on + strand, within MPMX19_06807at 71.876 kb on + strand, within MPMX19_06807at 71.985 kb on + strand, within MPMX19_06807at 71.986 kb on - strand, within MPMX19_06807at 71.986 kb on - strand, within MPMX19_06807at 72.371 kb on + strand, within MPMX19_06807at 72.371 kb on + strand, within MPMX19_06807at 72.371 kb on + strand, within MPMX19_06807at 72.372 kb on - strand, within MPMX19_06807at 72.372 kb on - strand, within MPMX19_06807at 72.372 kb on - strand, within MPMX19_06807at 72.372 kb on - strand, within MPMX19_06807at 72.380 kb on + strand, within MPMX19_06807at 72.380 kb on + strand, within MPMX19_06807at 72.380 kb on + strand, within MPMX19_06807at 72.381 kb on - strand, within MPMX19_06807at 72.405 kb on - strand, within MPMX19_06807at 72.405 kb on - strand, within MPMX19_06807at 72.405 kb on - strand, within MPMX19_06807at 72.405 kb on - strand, within MPMX19_06807at 72.405 kb on - strand, within MPMX19_06807at 72.500 kb on + strand, within MPMX19_06807at 72.501 kb on - strand, within MPMX19_06807at 72.590 kb on + strand, within MPMX19_06807at 72.591 kb on - strand, within MPMX19_06807

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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70,133 - MPMX19_06805 0.35 -0.2
70,365 + MPMX19_06805 0.56 +0.2
70,365 + MPMX19_06805 0.56 -0.7
70,365 + MPMX19_06805 0.56 +0.1
70,365 + MPMX19_06805 0.56 -0.4
70,366 - MPMX19_06805 0.56 -0.2
70,366 - MPMX19_06805 0.56 -0.6
70,366 - MPMX19_06805 0.56 -1.7
70,366 - MPMX19_06805 0.56 +0.8
70,366 - MPMX19_06805 0.56 +0.8
70,366 - MPMX19_06805 0.56 -1.9
70,366 - MPMX19_06805 0.56 -0.4
70,680 + MPMX19_06805 0.85 +0.8
70,680 + MPMX19_06805 0.85 +1.1
70,680 + MPMX19_06805 0.85 +0.5
70,680 + MPMX19_06805 0.85 -1.8
70,680 + MPMX19_06805 0.85 -1.5
70,680 + MPMX19_06805 0.85 -0.7
70,680 + MPMX19_06805 0.85 -0.5
70,680 + MPMX19_06805 0.85 +0.8
70,680 + MPMX19_06805 0.85 -0.2
70,680 + MPMX19_06805 0.85 -0.6
70,681 - MPMX19_06805 0.85 -0.6
70,681 - MPMX19_06805 0.85 +0.4
70,681 - MPMX19_06805 0.85 -1.1
70,681 - MPMX19_06805 0.85 +0.2
70,681 - MPMX19_06805 0.85 +0.3
70,681 - MPMX19_06805 0.85 -0.7
70,681 - MPMX19_06805 0.85 +0.5
70,681 - MPMX19_06805 0.85 -0.4
70,681 - MPMX19_06805 0.85 -0.9
70,681 - MPMX19_06805 0.85 -0.2
70,681 - MPMX19_06805 0.85 -1.1
70,934 - -0.4
70,934 - -0.3
70,934 - +0.4
70,934 - -0.3
70,934 - -0.8
70,996 + -0.7
70,997 - +0.2
71,261 - MPMX19_06806 0.44 -2.8
71,275 + MPMX19_06806 0.46 +0.5
71,290 + MPMX19_06806 0.48 +1.2
71,290 + MPMX19_06806 0.48 -0.4
71,290 + MPMX19_06806 0.48 -0.9
71,290 + MPMX19_06806 0.48 -0.1
71,291 - MPMX19_06806 0.48 -0.1
71,500 + MPMX19_06806 0.75 -0.7
71,500 + MPMX19_06806 0.75 +0.3
71,500 + MPMX19_06806 0.75 -1.0
71,501 - MPMX19_06806 0.75 -1.2
71,501 - MPMX19_06806 0.75 +0.1
71,569 + MPMX19_06806 0.84 -0.8
71,569 + MPMX19_06806 0.84 +0.5
71,569 + MPMX19_06806 0.84 -1.1
71,569 + MPMX19_06806 0.84 -2.8
71,570 - MPMX19_06806 0.84 -0.0
71,570 - MPMX19_06806 0.84 -0.4
71,570 - MPMX19_06806 0.84 -1.5
71,608 + MPMX19_06806 0.89 +0.5
71,674 + -0.1
71,675 - -1.2
71,719 + -0.1
71,719 + +0.0
71,719 + +0.5
71,719 + +0.2
71,720 - -1.1
71,750 + +0.2
71,876 + MPMX19_06807 0.12 +0.3
71,876 + MPMX19_06807 0.12 +0.2
71,876 + MPMX19_06807 0.12 +1.2
71,985 + MPMX19_06807 0.22 -0.8
71,986 - MPMX19_06807 0.22 +1.0
71,986 - MPMX19_06807 0.22 -0.3
72,371 + MPMX19_06807 0.59 +0.6
72,371 + MPMX19_06807 0.59 +3.2
72,371 + MPMX19_06807 0.59 +0.6
72,372 - MPMX19_06807 0.60 -0.1
72,372 - MPMX19_06807 0.60 -1.5
72,372 - MPMX19_06807 0.60 -0.3
72,372 - MPMX19_06807 0.60 -0.8
72,380 + MPMX19_06807 0.60 -0.9
72,380 + MPMX19_06807 0.60 +0.9
72,380 + MPMX19_06807 0.60 -1.8
72,381 - MPMX19_06807 0.60 +0.2
72,405 - MPMX19_06807 0.63 +0.3
72,405 - MPMX19_06807 0.63 -0.8
72,405 - MPMX19_06807 0.63 +0.9
72,405 - MPMX19_06807 0.63 -2.6
72,405 - MPMX19_06807 0.63 +1.3
72,500 + MPMX19_06807 0.72 -1.2
72,501 - MPMX19_06807 0.72 +0.4
72,590 + MPMX19_06807 0.80 -0.1
72,591 - MPMX19_06807 0.81 +0.1

Or see this region's nucleotide sequence