Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06804

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06803 and MPMX19_06804 are separated by 172 nucleotidesMPMX19_06804 and MPMX19_06805 are separated by 33 nucleotides MPMX19_06803: MPMX19_06803 - Solute-binding protein, at 67,528 to 68,562 _06803 MPMX19_06804: MPMX19_06804 - hypothetical protein, at 68,735 to 69,721 _06804 MPMX19_06805: MPMX19_06805 - hypothetical protein, at 69,755 to 70,840 _06805 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.847 kb on + strand, within MPMX19_06803at 67.848 kb on - strand, within MPMX19_06803at 67.848 kb on - strand, within MPMX19_06803at 67.848 kb on - strand, within MPMX19_06803at 67.848 kb on - strand, within MPMX19_06803at 67.850 kb on + strand, within MPMX19_06803at 67.850 kb on + strand, within MPMX19_06803at 67.850 kb on + strand, within MPMX19_06803at 67.851 kb on - strand, within MPMX19_06803at 67.851 kb on - strand, within MPMX19_06803at 67.851 kb on - strand, within MPMX19_06803at 67.851 kb on - strand, within MPMX19_06803at 68.141 kb on + strand, within MPMX19_06803at 68.141 kb on + strand, within MPMX19_06803at 68.142 kb on - strand, within MPMX19_06803at 68.142 kb on - strand, within MPMX19_06803at 68.142 kb on - strand, within MPMX19_06803at 68.142 kb on - strand, within MPMX19_06803at 68.142 kb on - strand, within MPMX19_06803at 68.142 kb on - strand, within MPMX19_06803at 68.174 kb on + strand, within MPMX19_06803at 68.174 kb on + strand, within MPMX19_06803at 68.175 kb on - strand, within MPMX19_06803at 68.175 kb on - strand, within MPMX19_06803at 68.175 kb on - strand, within MPMX19_06803at 68.357 kb on + strand, within MPMX19_06803at 69.114 kb on + strand, within MPMX19_06804at 69.114 kb on + strand, within MPMX19_06804at 69.114 kb on + strand, within MPMX19_06804at 69.115 kb on - strand, within MPMX19_06804at 69.115 kb on - strand, within MPMX19_06804at 69.792 kb on + strandat 69.793 kb on - strandat 70.133 kb on - strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.365 kb on + strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.366 kb on - strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.680 kb on + strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805at 70.681 kb on - strand, within MPMX19_06805

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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67,847 + MPMX19_06803 0.31 -0.9
67,847 + MPMX19_06803 0.31 +0.1
67,847 + MPMX19_06803 0.31 -0.9
67,847 + MPMX19_06803 0.31 -0.6
67,847 + MPMX19_06803 0.31 -0.1
67,847 + MPMX19_06803 0.31 +0.1
67,847 + MPMX19_06803 0.31 -0.4
67,848 - MPMX19_06803 0.31 -0.5
67,848 - MPMX19_06803 0.31 -1.1
67,848 - MPMX19_06803 0.31 -0.8
67,848 - MPMX19_06803 0.31 -1.5
67,850 + MPMX19_06803 0.31 -0.5
67,850 + MPMX19_06803 0.31 -1.3
67,850 + MPMX19_06803 0.31 -0.3
67,851 - MPMX19_06803 0.31 +0.2
67,851 - MPMX19_06803 0.31 -0.9
67,851 - MPMX19_06803 0.31 -1.3
67,851 - MPMX19_06803 0.31 +0.2
68,141 + MPMX19_06803 0.59 -0.1
68,141 + MPMX19_06803 0.59 -1.1
68,142 - MPMX19_06803 0.59 -0.9
68,142 - MPMX19_06803 0.59 +0.3
68,142 - MPMX19_06803 0.59 -0.1
68,142 - MPMX19_06803 0.59 -0.4
68,142 - MPMX19_06803 0.59 -0.1
68,142 - MPMX19_06803 0.59 +0.0
68,174 + MPMX19_06803 0.62 +0.2
68,174 + MPMX19_06803 0.62 +0.6
68,175 - MPMX19_06803 0.63 -1.9
68,175 - MPMX19_06803 0.63 +0.3
68,175 - MPMX19_06803 0.63 -0.8
68,357 + MPMX19_06803 0.80 +1.1
69,114 + MPMX19_06804 0.38 -1.7
69,114 + MPMX19_06804 0.38 -1.2
69,114 + MPMX19_06804 0.38 -0.7
69,115 - MPMX19_06804 0.39 -0.5
69,115 - MPMX19_06804 0.39 -1.2
69,792 + +0.5
69,793 - +0.9
70,133 - MPMX19_06805 0.35 -0.2
70,365 + MPMX19_06805 0.56 +0.2
70,365 + MPMX19_06805 0.56 -0.7
70,365 + MPMX19_06805 0.56 +0.1
70,365 + MPMX19_06805 0.56 -0.4
70,366 - MPMX19_06805 0.56 -0.2
70,366 - MPMX19_06805 0.56 -0.6
70,366 - MPMX19_06805 0.56 -1.7
70,366 - MPMX19_06805 0.56 +0.8
70,366 - MPMX19_06805 0.56 +0.8
70,366 - MPMX19_06805 0.56 -1.9
70,366 - MPMX19_06805 0.56 -0.4
70,680 + MPMX19_06805 0.85 +0.8
70,680 + MPMX19_06805 0.85 +1.1
70,680 + MPMX19_06805 0.85 +0.5
70,680 + MPMX19_06805 0.85 -1.8
70,680 + MPMX19_06805 0.85 -1.5
70,680 + MPMX19_06805 0.85 -0.7
70,680 + MPMX19_06805 0.85 -0.5
70,680 + MPMX19_06805 0.85 +0.8
70,680 + MPMX19_06805 0.85 -0.2
70,680 + MPMX19_06805 0.85 -0.6
70,681 - MPMX19_06805 0.85 -0.6
70,681 - MPMX19_06805 0.85 +0.4
70,681 - MPMX19_06805 0.85 -1.1
70,681 - MPMX19_06805 0.85 +0.2
70,681 - MPMX19_06805 0.85 +0.3
70,681 - MPMX19_06805 0.85 -0.7
70,681 - MPMX19_06805 0.85 +0.5
70,681 - MPMX19_06805 0.85 -0.4
70,681 - MPMX19_06805 0.85 -0.9
70,681 - MPMX19_06805 0.85 -0.2
70,681 - MPMX19_06805 0.85 -1.1

Or see this region's nucleotide sequence