Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06786

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06785 and MPMX19_06786 are separated by 720 nucleotidesMPMX19_06786 and MPMX19_06787 are separated by 183 nucleotides MPMX19_06785: MPMX19_06785 - L-idonate 5-dehydrogenase (NAD(P)(+)), at 48,831 to 49,868 _06785 MPMX19_06786: MPMX19_06786 - Formate dehydrogenase, mitochondrial, at 50,589 to 51,629 _06786 MPMX19_06787: MPMX19_06787 - Fosfomycin resistance protein AbaF, at 51,813 to 53,213 _06787 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3at 49.741 kb on + strand, within MPMX19_06785at 49.741 kb on + strand, within MPMX19_06785at 49.742 kb on - strand, within MPMX19_06785at 49.742 kb on - strand, within MPMX19_06785at 49.742 kb on - strand, within MPMX19_06785at 49.742 kb on - strand, within MPMX19_06785at 49.742 kb on - strand, within MPMX19_06785at 49.834 kb on - strandat 50.115 kb on + strandat 50.116 kb on - strandat 50.116 kb on - strandat 50.116 kb on - strandat 50.116 kb on - strandat 50.116 kb on - strandat 50.170 kb on - strandat 50.598 kb on - strandat 50.598 kb on - strandat 50.598 kb on - strandat 50.598 kb on - strandat 50.952 kb on + strand, within MPMX19_06786at 50.953 kb on - strand, within MPMX19_06786at 50.953 kb on - strand, within MPMX19_06786at 51.384 kb on + strand, within MPMX19_06786at 51.435 kb on + strand, within MPMX19_06786at 51.435 kb on + strand, within MPMX19_06786at 51.435 kb on + strand, within MPMX19_06786at 51.436 kb on - strand, within MPMX19_06786at 51.436 kb on - strand, within MPMX19_06786at 51.441 kb on + strand, within MPMX19_06786at 51.442 kb on - strand, within MPMX19_06786at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.963 kb on + strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 51.964 kb on - strand, within MPMX19_06787at 52.050 kb on + strand, within MPMX19_06787at 52.050 kb on + strand, within MPMX19_06787at 52.051 kb on - strand, within MPMX19_06787at 52.101 kb on + strand, within MPMX19_06787at 52.191 kb on + strand, within MPMX19_06787at 52.191 kb on + strand, within MPMX19_06787at 52.192 kb on - strand, within MPMX19_06787

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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49,741 + MPMX19_06785 0.88 +0.1
49,741 + MPMX19_06785 0.88 -1.0
49,742 - MPMX19_06785 0.88 +0.8
49,742 - MPMX19_06785 0.88 -0.1
49,742 - MPMX19_06785 0.88 +0.0
49,742 - MPMX19_06785 0.88 -0.2
49,742 - MPMX19_06785 0.88 +0.5
49,834 - -0.3
50,115 + -2.0
50,116 - -1.1
50,116 - -0.8
50,116 - -2.2
50,116 - -0.6
50,116 - +0.3
50,170 - -0.2
50,598 - -0.3
50,598 - +2.9
50,598 - +1.7
50,598 - +0.1
50,952 + MPMX19_06786 0.35 -0.3
50,953 - MPMX19_06786 0.35 -0.6
50,953 - MPMX19_06786 0.35 +0.9
51,384 + MPMX19_06786 0.76 -2.2
51,435 + MPMX19_06786 0.81 -0.3
51,435 + MPMX19_06786 0.81 +0.2
51,435 + MPMX19_06786 0.81 -0.7
51,436 - MPMX19_06786 0.81 +0.1
51,436 - MPMX19_06786 0.81 -0.2
51,441 + MPMX19_06786 0.82 -0.8
51,442 - MPMX19_06786 0.82 -1.9
51,963 + MPMX19_06787 0.11 -1.4
51,963 + MPMX19_06787 0.11 -1.4
51,963 + MPMX19_06787 0.11 -0.3
51,963 + MPMX19_06787 0.11 +0.6
51,963 + MPMX19_06787 0.11 +0.5
51,963 + MPMX19_06787 0.11 -1.1
51,963 + MPMX19_06787 0.11 -0.6
51,963 + MPMX19_06787 0.11 -0.4
51,964 - MPMX19_06787 0.11 -1.2
51,964 - MPMX19_06787 0.11 -0.4
51,964 - MPMX19_06787 0.11 +2.2
51,964 - MPMX19_06787 0.11 +0.1
51,964 - MPMX19_06787 0.11 -0.2
51,964 - MPMX19_06787 0.11 -2.1
51,964 - MPMX19_06787 0.11 -0.8
51,964 - MPMX19_06787 0.11 -0.1
51,964 - MPMX19_06787 0.11 -0.9
52,050 + MPMX19_06787 0.17 -1.4
52,050 + MPMX19_06787 0.17 -0.2
52,051 - MPMX19_06787 0.17 -0.8
52,101 + MPMX19_06787 0.21 -1.5
52,191 + MPMX19_06787 0.27 -1.9
52,191 + MPMX19_06787 0.27 -0.9
52,192 - MPMX19_06787 0.27 -0.9

Or see this region's nucleotide sequence