Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06752 and MPMX19_06753 are separated by 38 nucleotides MPMX19_06753 and MPMX19_06754 are separated by 101 nucleotides
MPMX19_06752: MPMX19_06752 - hypothetical protein, at 17,829 to 18,836
_06752
MPMX19_06753: MPMX19_06753 - Guanidinopropionase, at 18,875 to 19,891
_06753
MPMX19_06754: MPMX19_06754 - hypothetical protein, at 19,993 to 20,913
_06754
Position (kb) 18
19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 17.983 kb on + strand, within MPMX19_06752 at 18.119 kb on - strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.677 kb on - strand, within MPMX19_06752 at 18.850 kb on + strand at 18.851 kb on - strand at 18.851 kb on - strand at 19.134 kb on + strand, within MPMX19_06753 at 19.134 kb on + strand, within MPMX19_06753 at 19.134 kb on + strand, within MPMX19_06753 at 19.135 kb on - strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.312 kb on - strand, within MPMX19_06753 at 19.312 kb on - strand, within MPMX19_06753 at 19.353 kb on + strand, within MPMX19_06753 at 19.353 kb on + strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.371 kb on + strand, within MPMX19_06753 at 19.372 kb on - strand, within MPMX19_06753 at 19.372 kb on - strand, within MPMX19_06753 at 19.452 kb on + strand, within MPMX19_06753 at 19.515 kb on + strand, within MPMX19_06753 at 19.515 kb on + strand, within MPMX19_06753 at 19.803 kb on + strand at 19.803 kb on + strand at 19.803 kb on + strand at 19.932 kb on - strand at 19.932 kb on - strand at 19.932 kb on - strand at 19.949 kb on - strand at 19.949 kb on - strand at 19.989 kb on + strand at 19.989 kb on + strand at 19.989 kb on + strand at 19.989 kb on + strand at 19.990 kb on - strand at 19.990 kb on - strand at 19.990 kb on - strand at 19.990 kb on - strand at 19.990 kb on - strand at 20.157 kb on + strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.215 kb on + strand, within MPMX19_06754 at 20.215 kb on + strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.218 kb on - strand, within MPMX19_06754 at 20.367 kb on - strand, within MPMX19_06754 at 20.608 kb on + strand, within MPMX19_06754 at 20.608 kb on + strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.642 kb on - strand, within MPMX19_06754 at 20.642 kb on - strand, within MPMX19_06754 at 20.680 kb on + strand, within MPMX19_06754 at 20.681 kb on - strand, within MPMX19_06754 at 20.681 kb on - strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.759 kb on - strand, within MPMX19_06754
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 17,983 + MPMX19_06752 0.15 -0.5 18,119 - MPMX19_06752 0.29 -0.7 18,505 + MPMX19_06752 0.67 -1.0 18,505 + MPMX19_06752 0.67 -0.6 18,505 + MPMX19_06752 0.67 -2.2 18,505 + MPMX19_06752 0.67 -1.0 18,506 - MPMX19_06752 0.67 -0.4 18,506 - MPMX19_06752 0.67 -0.4 18,506 - MPMX19_06752 0.67 -0.5 18,506 - MPMX19_06752 0.67 -0.1 18,676 + MPMX19_06752 0.84 +0.1 18,676 + MPMX19_06752 0.84 -1.1 18,676 + MPMX19_06752 0.84 +0.3 18,676 + MPMX19_06752 0.84 -0.1 18,676 + MPMX19_06752 0.84 -0.5 18,677 - MPMX19_06752 0.84 -0.9 18,850 + -1.8 18,851 - +1.9 18,851 - +2.5 19,134 + MPMX19_06753 0.25 -1.4 19,134 + MPMX19_06753 0.25 +0.2 19,134 + MPMX19_06753 0.25 -0.7 19,135 - MPMX19_06753 0.26 -0.5 19,263 + MPMX19_06753 0.38 -0.3 19,263 + MPMX19_06753 0.38 +0.1 19,263 + MPMX19_06753 0.38 -1.4 19,263 + MPMX19_06753 0.38 -0.8 19,263 + MPMX19_06753 0.38 +1.2 19,263 + MPMX19_06753 0.38 -2.0 19,263 + MPMX19_06753 0.38 -1.9 19,263 + MPMX19_06753 0.38 -0.3 19,263 + MPMX19_06753 0.38 -0.7 19,263 + MPMX19_06753 0.38 -2.0 19,264 - MPMX19_06753 0.38 -0.1 19,264 - MPMX19_06753 0.38 -0.5 19,264 - MPMX19_06753 0.38 -0.8 19,264 - MPMX19_06753 0.38 -0.5 19,264 - MPMX19_06753 0.38 -1.8 19,264 - MPMX19_06753 0.38 -0.7 19,264 - MPMX19_06753 0.38 +0.3 19,264 - MPMX19_06753 0.38 +0.1 19,312 - MPMX19_06753 0.43 +0.1 19,312 - MPMX19_06753 0.43 -0.0 19,353 + MPMX19_06753 0.47 -0.7 19,353 + MPMX19_06753 0.47 +1.2 19,354 - MPMX19_06753 0.47 +0.5 19,354 - MPMX19_06753 0.47 +0.3 19,354 - MPMX19_06753 0.47 +0.5 19,354 - MPMX19_06753 0.47 -0.0 19,354 - MPMX19_06753 0.47 -1.7 19,371 + MPMX19_06753 0.49 -1.0 19,372 - MPMX19_06753 0.49 -2.7 19,372 - MPMX19_06753 0.49 -1.3 19,452 + MPMX19_06753 0.57 +0.8 19,515 + MPMX19_06753 0.63 -0.0 19,515 + MPMX19_06753 0.63 +1.3 19,803 + -0.8 19,803 + -0.6 19,803 + -0.1 19,932 - +0.1 19,932 - -1.1 19,932 - -0.5 19,949 - -0.1 19,949 - -0.1 19,989 + -1.4 19,989 + -2.1 19,989 + -0.2 19,989 + -2.3 19,990 - -0.2 19,990 - +0.9 19,990 - -0.6 19,990 - -1.2 19,990 - -0.4 20,157 + MPMX19_06754 0.18 -2.2 20,158 - MPMX19_06754 0.18 -1.3 20,158 - MPMX19_06754 0.18 -0.4 20,158 - MPMX19_06754 0.18 -0.1 20,158 - MPMX19_06754 0.18 -2.1 20,215 + MPMX19_06754 0.24 -0.4 20,215 + MPMX19_06754 0.24 -0.4 20,216 - MPMX19_06754 0.24 +0.3 20,216 - MPMX19_06754 0.24 +0.9 20,216 - MPMX19_06754 0.24 -0.5 20,216 - MPMX19_06754 0.24 -1.5 20,216 - MPMX19_06754 0.24 +0.9 20,218 - MPMX19_06754 0.24 -0.2 20,367 - MPMX19_06754 0.41 -1.2 20,608 + MPMX19_06754 0.67 -0.7 20,608 + MPMX19_06754 0.67 -0.9 20,609 - MPMX19_06754 0.67 +0.8 20,609 - MPMX19_06754 0.67 +1.1 20,609 - MPMX19_06754 0.67 +0.9 20,609 - MPMX19_06754 0.67 -0.6 20,641 + MPMX19_06754 0.70 -1.2 20,641 + MPMX19_06754 0.70 -0.1 20,641 + MPMX19_06754 0.70 +0.4 20,641 + MPMX19_06754 0.70 -0.5 20,641 + MPMX19_06754 0.70 -0.6 20,642 - MPMX19_06754 0.70 -2.0 20,642 - MPMX19_06754 0.70 +0.4 20,680 + MPMX19_06754 0.75 -0.3 20,681 - MPMX19_06754 0.75 +0.9 20,681 - MPMX19_06754 0.75 -1.7 20,758 + MPMX19_06754 0.83 -0.4 20,758 + MPMX19_06754 0.83 -0.7 20,758 + MPMX19_06754 0.83 +0.7 20,759 - MPMX19_06754 0.83 -1.2
Or see this region's nucleotide sequence