Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06743 and MPMX19_06744 are separated by 53 nucleotides MPMX19_06744 and MPMX19_06745 are separated by 83 nucleotides MPMX19_06745 and MPMX19_06746 are separated by 82 nucleotides MPMX19_06746 and MPMX19_06747 overlap by 4 nucleotides
MPMX19_06743: MPMX19_06743 - Chemotaxis protein CheA, at 6,801 to 8,792
_06743
MPMX19_06744: MPMX19_06744 - Chemotaxis protein CheW, at 8,846 to 9,298
_06744
MPMX19_06745: MPMX19_06745 - hypothetical protein, at 9,382 to 11,610
_06745
MPMX19_06746: MPMX19_06746 - Chemotaxis protein CheW, at 11,693 to 12,223
_06746
MPMX19_06747: MPMX19_06747 - Chemotaxis protein methyltransferase, at 12,220 to 13,107
_06747
Position (kb)
9
10
11
12 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 8.407 kb on - strand, within MPMX19_06743 at 8.562 kb on + strand, within MPMX19_06743 at 8.562 kb on + strand, within MPMX19_06743 at 8.562 kb on + strand, within MPMX19_06743 at 8.563 kb on - strand, within MPMX19_06743 at 8.563 kb on - strand, within MPMX19_06743 at 9.188 kb on - strand, within MPMX19_06744 at 9.188 kb on - strand, within MPMX19_06744 at 9.559 kb on + strand at 9.560 kb on - strand at 9.560 kb on - strand at 9.560 kb on - strand at 9.613 kb on - strand, within MPMX19_06745 at 9.613 kb on - strand, within MPMX19_06745 at 9.613 kb on - strand, within MPMX19_06745 at 9.676 kb on + strand, within MPMX19_06745 at 9.840 kb on + strand, within MPMX19_06745 at 9.840 kb on + strand, within MPMX19_06745 at 9.841 kb on - strand, within MPMX19_06745 at 9.841 kb on - strand, within MPMX19_06745 at 10.020 kb on + strand, within MPMX19_06745 at 10.021 kb on - strand, within MPMX19_06745 at 10.129 kb on + strand, within MPMX19_06745 at 10.130 kb on - strand, within MPMX19_06745 at 10.138 kb on + strand, within MPMX19_06745 at 10.138 kb on + strand, within MPMX19_06745 at 10.138 kb on + strand, within MPMX19_06745 at 10.139 kb on - strand, within MPMX19_06745 at 10.318 kb on + strand, within MPMX19_06745 at 10.318 kb on + strand, within MPMX19_06745 at 10.318 kb on + strand, within MPMX19_06745 at 10.318 kb on + strand, within MPMX19_06745 at 10.318 kb on + strand, within MPMX19_06745 at 10.318 kb on + strand, within MPMX19_06745 at 10.318 kb on + strand, within MPMX19_06745 at 10.319 kb on - strand, within MPMX19_06745 at 10.319 kb on - strand, within MPMX19_06745 at 10.319 kb on - strand, within MPMX19_06745 at 10.319 kb on - strand, within MPMX19_06745 at 10.390 kb on + strand, within MPMX19_06745 at 10.390 kb on + strand, within MPMX19_06745 at 10.390 kb on + strand, within MPMX19_06745 at 10.390 kb on + strand, within MPMX19_06745 at 10.390 kb on + strand, within MPMX19_06745 at 10.390 kb on + strand, within MPMX19_06745 at 10.391 kb on - strand, within MPMX19_06745 at 10.391 kb on - strand, within MPMX19_06745 at 10.391 kb on - strand, within MPMX19_06745 at 10.392 kb on + strand, within MPMX19_06745 at 10.392 kb on + strand, within MPMX19_06745 at 10.393 kb on - strand, within MPMX19_06745 at 11.368 kb on + strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.597 kb on - strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.730 kb on - strand at 11.730 kb on - strand at 11.730 kb on - strand at 11.766 kb on + strand, within MPMX19_06746 at 11.766 kb on + strand, within MPMX19_06746 at 11.767 kb on - strand, within MPMX19_06746 at 12.421 kb on + strand, within MPMX19_06747 at 12.421 kb on + strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 8,407 - MPMX19_06743 0.81 -0.1 8,562 + MPMX19_06743 0.88 -0.4 8,562 + MPMX19_06743 0.88 -0.6 8,562 + MPMX19_06743 0.88 -1.9 8,563 - MPMX19_06743 0.88 -0.4 8,563 - MPMX19_06743 0.88 -1.2 9,188 - MPMX19_06744 0.75 +0.0 9,188 - MPMX19_06744 0.75 -1.3 9,559 + -2.1 9,560 - -1.5 9,560 - -0.7 9,560 - -2.1 9,613 - MPMX19_06745 0.10 -0.4 9,613 - MPMX19_06745 0.10 -1.1 9,613 - MPMX19_06745 0.10 +0.1 9,676 + MPMX19_06745 0.13 +0.0 9,840 + MPMX19_06745 0.21 -0.3 9,840 + MPMX19_06745 0.21 -1.0 9,841 - MPMX19_06745 0.21 -0.5 9,841 - MPMX19_06745 0.21 +0.2 10,020 + MPMX19_06745 0.29 -1.2 10,021 - MPMX19_06745 0.29 -0.4 10,129 + MPMX19_06745 0.34 +0.1 10,130 - MPMX19_06745 0.34 -2.1 10,138 + MPMX19_06745 0.34 -0.7 10,138 + MPMX19_06745 0.34 -0.7 10,138 + MPMX19_06745 0.34 -2.1 10,139 - MPMX19_06745 0.34 -0.3 10,318 + MPMX19_06745 0.42 -1.7 10,318 + MPMX19_06745 0.42 +0.2 10,318 + MPMX19_06745 0.42 -1.1 10,318 + MPMX19_06745 0.42 -0.7 10,318 + MPMX19_06745 0.42 -1.0 10,318 + MPMX19_06745 0.42 +2.3 10,318 + MPMX19_06745 0.42 +0.3 10,319 - MPMX19_06745 0.42 -0.7 10,319 - MPMX19_06745 0.42 -0.0 10,319 - MPMX19_06745 0.42 -1.2 10,319 - MPMX19_06745 0.42 -0.8 10,390 + MPMX19_06745 0.45 -0.3 10,390 + MPMX19_06745 0.45 -0.8 10,390 + MPMX19_06745 0.45 +0.2 10,390 + MPMX19_06745 0.45 -0.4 10,390 + MPMX19_06745 0.45 -0.2 10,390 + MPMX19_06745 0.45 -0.2 10,391 - MPMX19_06745 0.45 -1.2 10,391 - MPMX19_06745 0.45 -1.5 10,391 - MPMX19_06745 0.45 -0.9 10,392 + MPMX19_06745 0.45 +1.7 10,392 + MPMX19_06745 0.45 -1.4 10,393 - MPMX19_06745 0.45 +0.9 11,368 + MPMX19_06745 0.89 +0.5 11,369 - MPMX19_06745 0.89 +0.3 11,369 - MPMX19_06745 0.89 -1.2 11,369 - MPMX19_06745 0.89 -0.5 11,369 - MPMX19_06745 0.89 -0.7 11,597 - +0.3 11,729 + +0.7 11,729 + +0.5 11,729 + +0.1 11,729 + -1.0 11,729 + -0.7 11,730 - -1.2 11,730 - +0.9 11,730 - -1.0 11,766 + MPMX19_06746 0.14 +0.3 11,766 + MPMX19_06746 0.14 +0.9 11,767 - MPMX19_06746 0.14 -2.4 12,421 + MPMX19_06747 0.23 -0.7 12,421 + MPMX19_06747 0.23 +0.7 12,422 - MPMX19_06747 0.23 +0.6 12,422 - MPMX19_06747 0.23 -0.3 12,422 - MPMX19_06747 0.23 +2.5 12,422 - MPMX19_06747 0.23 -0.7
Or see this region's nucleotide sequence