Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06726

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06725 and MPMX19_06726 overlap by 4 nucleotidesMPMX19_06726 and MPMX19_06727 are separated by 14 nucleotidesMPMX19_06727 and MPMX19_06728 are separated by 45 nucleotides MPMX19_06725: MPMX19_06725 - dTDP-glucose 4,6-dehydratase 2, at 301,565 to 302,632 _06725 MPMX19_06726: MPMX19_06726 - dTDP-4-dehydrorhamnose reductase, at 302,629 to 303,531 _06726 MPMX19_06727: MPMX19_06727 - Glucose-1-phosphate thymidylyltransferase 1, at 303,546 to 304,409 _06727 MPMX19_06728: MPMX19_06728 - UDP-glucose 4-epimerase, at 304,455 to 305,411 _06728 Position (kb) 302 303 304Strain fitness (log2 ratio) -1 0 1at 302.585 kb on + strandat 302.585 kb on + strandat 302.585 kb on + strandat 302.585 kb on + strandat 302.585 kb on + strandat 304.408 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
302,585 + +0.1
302,585 + -0.7
302,585 + -0.8
302,585 + -0.2
302,585 + -0.1
304,408 - +1.1

Or see this region's nucleotide sequence