Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06514

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06513 and MPMX19_06514 are separated by 122 nucleotidesMPMX19_06514 and MPMX19_06515 overlap by 4 nucleotidesMPMX19_06515 and MPMX19_06516 are separated by 30 nucleotides MPMX19_06513: MPMX19_06513 - putative N-succinyldiaminopimelate aminotransferase DapC, at 298,581 to 299,747 _06513 MPMX19_06514: MPMX19_06514 - L-methionine gamma-lyase, at 299,870 to 301,123 _06514 MPMX19_06515: MPMX19_06515 - hypothetical protein, at 301,120 to 301,668 _06515 MPMX19_06516: MPMX19_06516 - D-methionine-binding lipoprotein MetQ, at 301,699 to 302,526 _06516 Position (kb) 299 300 301 302Strain fitness (log2 ratio) -2 -1 0 1 2 3at 298.975 kb on + strand, within MPMX19_06513at 298.975 kb on + strand, within MPMX19_06513at 298.975 kb on + strand, within MPMX19_06513at 298.976 kb on - strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.026 kb on + strand, within MPMX19_06513at 299.027 kb on - strand, within MPMX19_06513at 299.027 kb on - strand, within MPMX19_06513at 299.110 kb on + strand, within MPMX19_06513at 299.110 kb on + strand, within MPMX19_06513at 299.110 kb on + strand, within MPMX19_06513at 299.111 kb on - strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.152 kb on + strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.153 kb on - strand, within MPMX19_06513at 299.221 kb on - strand, within MPMX19_06513at 299.384 kb on - strand, within MPMX19_06513at 299.384 kb on - strand, within MPMX19_06513at 299.392 kb on + strand, within MPMX19_06513at 299.393 kb on - strand, within MPMX19_06513at 299.689 kb on - strandat 299.993 kb on + strandat 299.993 kb on + strandat 299.993 kb on + strandat 299.993 kb on + strandat 299.993 kb on + strandat 299.994 kb on - strandat 299.994 kb on - strandat 299.994 kb on - strandat 299.994 kb on - strandat 299.994 kb on - strandat 299.994 kb on - strandat 299.994 kb on - strandat 300.050 kb on + strand, within MPMX19_06514at 300.050 kb on + strand, within MPMX19_06514at 300.050 kb on + strand, within MPMX19_06514at 300.050 kb on + strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.051 kb on - strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.056 kb on + strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.057 kb on - strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.233 kb on + strand, within MPMX19_06514at 300.234 kb on - strand, within MPMX19_06514at 300.234 kb on - strand, within MPMX19_06514at 300.234 kb on - strand, within MPMX19_06514at 300.602 kb on + strand, within MPMX19_06514at 300.603 kb on - strand, within MPMX19_06514at 300.603 kb on - strand, within MPMX19_06514at 300.956 kb on + strand, within MPMX19_06514at 300.956 kb on + strand, within MPMX19_06514at 300.956 kb on + strand, within MPMX19_06514at 300.957 kb on - strand, within MPMX19_06514at 300.957 kb on - strand, within MPMX19_06514at 300.957 kb on - strand, within MPMX19_06514at 301.138 kb on + strandat 301.138 kb on + strandat 301.139 kb on - strandat 301.139 kb on - strandat 301.139 kb on - strandat 301.139 kb on - strandat 301.139 kb on - strandat 301.139 kb on - strandat 301.313 kb on - strand, within MPMX19_06515at 301.479 kb on + strand, within MPMX19_06515at 301.479 kb on + strand, within MPMX19_06515at 301.479 kb on + strand, within MPMX19_06515at 301.480 kb on - strand, within MPMX19_06515at 301.489 kb on + strand, within MPMX19_06515at 301.489 kb on + strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.508 kb on - strand, within MPMX19_06515at 301.715 kb on + strandat 301.715 kb on + strandat 301.716 kb on - strandat 301.968 kb on + strand, within MPMX19_06516at 301.968 kb on + strand, within MPMX19_06516at 301.969 kb on - strand, within MPMX19_06516at 301.969 kb on - strand, within MPMX19_06516at 302.005 kb on + strand, within MPMX19_06516at 302.006 kb on - strand, within MPMX19_06516at 302.006 kb on - strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.032 kb on + strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.033 kb on - strand, within MPMX19_06516at 302.053 kb on + strand, within MPMX19_06516at 302.053 kb on + strand, within MPMX19_06516at 302.054 kb on - strand, within MPMX19_06516at 302.054 kb on - strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.065 kb on + strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516at 302.066 kb on - strand, within MPMX19_06516

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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298,975 + MPMX19_06513 0.34 +0.5
298,975 + MPMX19_06513 0.34 -0.2
298,975 + MPMX19_06513 0.34 +0.9
298,976 - MPMX19_06513 0.34 -0.4
299,026 + MPMX19_06513 0.38 +0.7
299,026 + MPMX19_06513 0.38 +0.1
299,026 + MPMX19_06513 0.38 +0.0
299,026 + MPMX19_06513 0.38 -0.1
299,026 + MPMX19_06513 0.38 +0.0
299,027 - MPMX19_06513 0.38 +1.1
299,027 - MPMX19_06513 0.38 +0.2
299,110 + MPMX19_06513 0.45 -0.7
299,110 + MPMX19_06513 0.45 +0.1
299,110 + MPMX19_06513 0.45 -0.9
299,111 - MPMX19_06513 0.45 -0.2
299,152 + MPMX19_06513 0.49 +1.8
299,152 + MPMX19_06513 0.49 +1.2
299,152 + MPMX19_06513 0.49 -1.5
299,152 + MPMX19_06513 0.49 +2.5
299,153 - MPMX19_06513 0.49 -0.8
299,153 - MPMX19_06513 0.49 -1.9
299,153 - MPMX19_06513 0.49 -1.8
299,153 - MPMX19_06513 0.49 -0.6
299,221 - MPMX19_06513 0.55 +1.0
299,384 - MPMX19_06513 0.69 -0.4
299,384 - MPMX19_06513 0.69 -2.2
299,392 + MPMX19_06513 0.69 -1.4
299,393 - MPMX19_06513 0.70 -0.0
299,689 - +0.7
299,993 + -1.1
299,993 + -1.5
299,993 + +0.8
299,993 + -1.0
299,993 + +0.8
299,994 - -0.1
299,994 - +0.5
299,994 - +0.0
299,994 - +0.4
299,994 - -1.6
299,994 - +1.7
299,994 - -0.9
300,050 + MPMX19_06514 0.14 -0.0
300,050 + MPMX19_06514 0.14 -0.5
300,050 + MPMX19_06514 0.14 -0.0
300,050 + MPMX19_06514 0.14 -0.0
300,051 - MPMX19_06514 0.14 -0.2
300,051 - MPMX19_06514 0.14 +0.6
300,051 - MPMX19_06514 0.14 -1.1
300,051 - MPMX19_06514 0.14 +0.8
300,051 - MPMX19_06514 0.14 +0.9
300,051 - MPMX19_06514 0.14 +0.9
300,051 - MPMX19_06514 0.14 -1.8
300,051 - MPMX19_06514 0.14 +0.7
300,051 - MPMX19_06514 0.14 +1.6
300,051 - MPMX19_06514 0.14 +0.0
300,051 - MPMX19_06514 0.14 -0.5
300,056 + MPMX19_06514 0.15 +0.1
300,056 + MPMX19_06514 0.15 +0.5
300,056 + MPMX19_06514 0.15 +0.4
300,056 + MPMX19_06514 0.15 +0.4
300,056 + MPMX19_06514 0.15 +1.5
300,056 + MPMX19_06514 0.15 -1.4
300,056 + MPMX19_06514 0.15 -1.1
300,056 + MPMX19_06514 0.15 -0.1
300,056 + MPMX19_06514 0.15 +2.1
300,056 + MPMX19_06514 0.15 +0.5
300,057 - MPMX19_06514 0.15 -0.2
300,057 - MPMX19_06514 0.15 +1.1
300,057 - MPMX19_06514 0.15 +0.5
300,057 - MPMX19_06514 0.15 +0.1
300,057 - MPMX19_06514 0.15 +0.5
300,057 - MPMX19_06514 0.15 +3.7
300,057 - MPMX19_06514 0.15 +1.4
300,057 - MPMX19_06514 0.15 -0.9
300,233 + MPMX19_06514 0.29 -1.1
300,233 + MPMX19_06514 0.29 +1.1
300,233 + MPMX19_06514 0.29 -1.0
300,233 + MPMX19_06514 0.29 -1.1
300,234 - MPMX19_06514 0.29 -0.6
300,234 - MPMX19_06514 0.29 -0.5
300,234 - MPMX19_06514 0.29 -0.8
300,602 + MPMX19_06514 0.58 -0.4
300,603 - MPMX19_06514 0.58 -0.3
300,603 - MPMX19_06514 0.58 -1.2
300,956 + MPMX19_06514 0.87 +1.5
300,956 + MPMX19_06514 0.87 +1.0
300,956 + MPMX19_06514 0.87 -0.2
300,957 - MPMX19_06514 0.87 -0.5
300,957 - MPMX19_06514 0.87 +1.7
300,957 - MPMX19_06514 0.87 +0.0
301,138 + +0.1
301,138 + -0.6
301,139 - +0.5
301,139 - +1.2
301,139 - -0.0
301,139 - +0.1
301,139 - +0.5
301,139 - -1.6
301,313 - MPMX19_06515 0.35 -0.4
301,479 + MPMX19_06515 0.65 -2.2
301,479 + MPMX19_06515 0.65 +0.6
301,479 + MPMX19_06515 0.65 -0.9
301,480 - MPMX19_06515 0.66 +1.1
301,489 + MPMX19_06515 0.67 +0.5
301,489 + MPMX19_06515 0.67 +0.9
301,508 - MPMX19_06515 0.71 -0.7
301,508 - MPMX19_06515 0.71 -0.4
301,508 - MPMX19_06515 0.71 +3.1
301,508 - MPMX19_06515 0.71 -1.9
301,508 - MPMX19_06515 0.71 -0.6
301,508 - MPMX19_06515 0.71 -0.0
301,508 - MPMX19_06515 0.71 -2.0
301,715 + -1.4
301,715 + +1.5
301,716 - -0.2
301,968 + MPMX19_06516 0.32 -0.0
301,968 + MPMX19_06516 0.32 -1.1
301,969 - MPMX19_06516 0.33 +0.3
301,969 - MPMX19_06516 0.33 +0.7
302,005 + MPMX19_06516 0.37 -1.2
302,006 - MPMX19_06516 0.37 +0.0
302,006 - MPMX19_06516 0.37 +0.1
302,032 + MPMX19_06516 0.40 -1.1
302,032 + MPMX19_06516 0.40 -0.4
302,032 + MPMX19_06516 0.40 +1.1
302,032 + MPMX19_06516 0.40 -0.9
302,032 + MPMX19_06516 0.40 +0.9
302,032 + MPMX19_06516 0.40 -1.5
302,032 + MPMX19_06516 0.40 +0.1
302,032 + MPMX19_06516 0.40 -1.1
302,032 + MPMX19_06516 0.40 +0.3
302,032 + MPMX19_06516 0.40 -2.5
302,032 + MPMX19_06516 0.40 +0.1
302,032 + MPMX19_06516 0.40 +0.8
302,033 - MPMX19_06516 0.40 +0.2
302,033 - MPMX19_06516 0.40 -0.2
302,033 - MPMX19_06516 0.40 +0.3
302,033 - MPMX19_06516 0.40 -0.2
302,033 - MPMX19_06516 0.40 -1.2
302,033 - MPMX19_06516 0.40 -0.2
302,033 - MPMX19_06516 0.40 -0.5
302,033 - MPMX19_06516 0.40 -0.1
302,033 - MPMX19_06516 0.40 -1.0
302,033 - MPMX19_06516 0.40 +0.2
302,033 - MPMX19_06516 0.40 +0.6
302,033 - MPMX19_06516 0.40 +0.8
302,033 - MPMX19_06516 0.40 +0.4
302,033 - MPMX19_06516 0.40 -0.7
302,033 - MPMX19_06516 0.40 +0.4
302,033 - MPMX19_06516 0.40 +0.3
302,053 + MPMX19_06516 0.43 -0.9
302,053 + MPMX19_06516 0.43 +0.3
302,054 - MPMX19_06516 0.43 -0.1
302,054 - MPMX19_06516 0.43 +0.6
302,065 + MPMX19_06516 0.44 -0.5
302,065 + MPMX19_06516 0.44 -0.5
302,065 + MPMX19_06516 0.44 +0.4
302,065 + MPMX19_06516 0.44 -1.5
302,065 + MPMX19_06516 0.44 -0.8
302,065 + MPMX19_06516 0.44 -1.0
302,065 + MPMX19_06516 0.44 -1.1
302,065 + MPMX19_06516 0.44 -0.4
302,065 + MPMX19_06516 0.44 +1.1
302,065 + MPMX19_06516 0.44 -0.9
302,065 + MPMX19_06516 0.44 -0.4
302,065 + MPMX19_06516 0.44 +0.3
302,065 + MPMX19_06516 0.44 +0.9
302,066 - MPMX19_06516 0.44 +0.7
302,066 - MPMX19_06516 0.44 -1.4
302,066 - MPMX19_06516 0.44 -0.2
302,066 - MPMX19_06516 0.44 -0.2
302,066 - MPMX19_06516 0.44 -1.1
302,066 - MPMX19_06516 0.44 +0.2
302,066 - MPMX19_06516 0.44 +2.1
302,066 - MPMX19_06516 0.44 +0.8
302,066 - MPMX19_06516 0.44 +1.7
302,066 - MPMX19_06516 0.44 -0.6
302,066 - MPMX19_06516 0.44 -0.3
302,066 - MPMX19_06516 0.44 -1.2
302,066 - MPMX19_06516 0.44 +0.4
302,066 - MPMX19_06516 0.44 -1.4

Or see this region's nucleotide sequence