Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06452 and MPMX19_06453 overlap by 4 nucleotides MPMX19_06453 and MPMX19_06454 overlap by 8 nucleotides MPMX19_06454 and MPMX19_06455 are separated by 295 nucleotides
MPMX19_06452: MPMX19_06452 - hypothetical protein, at 226,253 to 227,740
_06452
MPMX19_06453: MPMX19_06453 - hypothetical protein, at 227,737 to 228,612
_06453
MPMX19_06454: MPMX19_06454 - hypothetical protein, at 228,605 to 230,290
_06454
MPMX19_06455: MPMX19_06455 - Tyrosine recombinase XerC, at 230,586 to 231,743
_06455
Position (kb) 228
229
230
231 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.613 kb on + strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.614 kb on - strand at 227.634 kb on + strand at 227.634 kb on + strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.635 kb on - strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.707 kb on + strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.708 kb on - strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.728 kb on + strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.729 kb on - strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.762 kb on + strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 227.763 kb on - strand at 228.009 kb on + strand, within MPMX19_06453 at 228.009 kb on + strand, within MPMX19_06453 at 228.010 kb on - strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.278 kb on + strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.279 kb on - strand, within MPMX19_06453 at 228.507 kb on - strand, within MPMX19_06453 at 228.596 kb on + strand at 228.597 kb on - strand at 228.597 kb on - strand at 228.617 kb on + strand at 228.617 kb on + strand at 228.617 kb on + strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.618 kb on - strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.630 kb on + strand at 228.631 kb on - strand at 228.631 kb on - strand at 228.652 kb on + strand at 228.653 kb on - strand at 228.653 kb on - strand at 228.667 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.684 kb on + strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.685 kb on - strand at 228.781 kb on + strand, within MPMX19_06454 at 228.782 kb on - strand, within MPMX19_06454 at 228.782 kb on - strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.803 kb on + strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.804 kb on - strand, within MPMX19_06454 at 228.948 kb on + strand, within MPMX19_06454 at 228.948 kb on + strand, within MPMX19_06454 at 228.948 kb on + strand, within MPMX19_06454 at 228.949 kb on - strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 228.999 kb on + strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.000 kb on - strand, within MPMX19_06454 at 229.021 kb on + strand, within MPMX19_06454 at 229.057 kb on - strand, within MPMX19_06454 at 229.136 kb on + strand, within MPMX19_06454 at 229.137 kb on - strand, within MPMX19_06454 at 229.137 kb on - strand, within MPMX19_06454 at 229.137 kb on - strand, within MPMX19_06454 at 229.302 kb on + strand, within MPMX19_06454 at 229.302 kb on + strand, within MPMX19_06454 at 229.302 kb on + strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.303 kb on - strand, within MPMX19_06454 at 229.440 kb on + strand, within MPMX19_06454 at 229.441 kb on - strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.511 kb on + strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.512 kb on - strand, within MPMX19_06454 at 229.603 kb on + strand, within MPMX19_06454 at 229.604 kb on - strand, within MPMX19_06454 at 229.604 kb on - strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.644 kb on + strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.645 kb on - strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.664 kb on + strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.665 kb on - strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.723 kb on + strand, within MPMX19_06454 at 229.724 kb on - strand, within MPMX19_06454 at 229.738 kb on + strand, within MPMX19_06454 at 229.739 kb on - strand, within MPMX19_06454 at 229.853 kb on - strand, within MPMX19_06454 at 229.853 kb on - strand, within MPMX19_06454 at 229.974 kb on + strand, within MPMX19_06454 at 229.975 kb on - strand, within MPMX19_06454 at 229.975 kb on - strand, within MPMX19_06454 at 230.061 kb on - strand, within MPMX19_06454 at 230.091 kb on + strand, within MPMX19_06454 at 230.091 kb on + strand, within MPMX19_06454 at 230.092 kb on - strand, within MPMX19_06454 at 230.110 kb on - strand, within MPMX19_06454 at 230.110 kb on - strand, within MPMX19_06454 at 230.176 kb on - strand at 230.176 kb on - strand at 230.176 kb on - strand at 230.382 kb on - strand at 230.382 kb on - strand at 230.382 kb on - strand at 230.405 kb on + strand at 230.406 kb on - strand at 230.800 kb on - strand, within MPMX19_06455 at 230.823 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.910 kb on + strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455 at 230.911 kb on - strand, within MPMX19_06455
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 227,613 + -0.7 227,613 + -0.2 227,613 + +0.5 227,613 + -1.7 227,613 + +0.9 227,613 + -0.1 227,613 + -0.9 227,613 + -1.4 227,613 + -0.3 227,613 + +1.7 227,613 + -0.8 227,614 - +0.4 227,614 - -1.2 227,614 - +1.1 227,614 - -2.8 227,614 - +0.1 227,614 - -0.2 227,614 - +0.7 227,614 - +1.2 227,614 - -1.0 227,614 - -0.2 227,614 - -1.1 227,614 - +0.0 227,614 - -0.3 227,634 + +0.1 227,634 + -0.9 227,635 - +0.5 227,635 - -0.2 227,635 - -1.2 227,635 - -0.3 227,707 + -0.7 227,707 + +0.8 227,707 + -2.0 227,707 + -0.7 227,708 - -1.6 227,708 - -1.6 227,708 - +0.3 227,708 - -0.9 227,708 - -0.1 227,708 - -1.1 227,708 - +1.7 227,728 + -0.6 227,728 + +0.8 227,728 + -1.1 227,728 + +0.3 227,729 - +1.4 227,729 - -0.5 227,729 - -0.5 227,729 - +0.4 227,729 - -0.7 227,762 + -1.0 227,762 + -1.3 227,762 + +0.4 227,762 + +0.4 227,762 + +0.1 227,762 + +0.9 227,762 + +0.8 227,762 + +0.4 227,762 + -0.3 227,762 + -1.1 227,763 - -1.0 227,763 - -0.4 227,763 - +0.9 227,763 - -0.5 227,763 - -1.9 227,763 - +0.4 228,009 + MPMX19_06453 0.31 +0.5 228,009 + MPMX19_06453 0.31 -0.4 228,010 - MPMX19_06453 0.31 +0.5 228,278 + MPMX19_06453 0.62 +0.5 228,278 + MPMX19_06453 0.62 -1.1 228,278 + MPMX19_06453 0.62 -1.0 228,278 + MPMX19_06453 0.62 -0.1 228,278 + MPMX19_06453 0.62 -0.2 228,278 + MPMX19_06453 0.62 -1.2 228,278 + MPMX19_06453 0.62 -1.1 228,278 + MPMX19_06453 0.62 -1.1 228,279 - MPMX19_06453 0.62 +0.8 228,279 - MPMX19_06453 0.62 -0.3 228,279 - MPMX19_06453 0.62 +0.3 228,279 - MPMX19_06453 0.62 +0.4 228,279 - MPMX19_06453 0.62 +0.6 228,279 - MPMX19_06453 0.62 +0.1 228,279 - MPMX19_06453 0.62 -0.6 228,279 - MPMX19_06453 0.62 +1.1 228,507 - MPMX19_06453 0.88 +0.7 228,596 + +0.5 228,597 - -1.6 228,597 - +0.1 228,617 + +1.4 228,617 + -0.9 228,617 + -0.8 228,618 - -1.2 228,618 - -1.7 228,618 - -2.7 228,618 - +1.1 228,618 - +1.9 228,618 - +1.0 228,630 + +0.1 228,630 + -0.7 228,630 + +0.5 228,630 + -0.7 228,631 - -1.1 228,631 - +0.9 228,652 + +0.1 228,653 - +1.0 228,653 - -0.0 228,667 + +0.8 228,684 + +0.8 228,684 + +0.5 228,684 + +1.8 228,684 + -0.7 228,685 - -0.9 228,685 - +0.2 228,685 - -2.0 228,685 - -0.0 228,685 - -0.7 228,781 + MPMX19_06454 0.10 +0.5 228,782 - MPMX19_06454 0.10 +0.1 228,782 - MPMX19_06454 0.10 -2.8 228,803 + MPMX19_06454 0.12 +0.6 228,803 + MPMX19_06454 0.12 +0.9 228,803 + MPMX19_06454 0.12 +0.8 228,803 + MPMX19_06454 0.12 -0.3 228,803 + MPMX19_06454 0.12 +0.9 228,803 + MPMX19_06454 0.12 +0.6 228,803 + MPMX19_06454 0.12 -0.7 228,803 + MPMX19_06454 0.12 -0.6 228,803 + MPMX19_06454 0.12 +0.0 228,803 + MPMX19_06454 0.12 +0.9 228,803 + MPMX19_06454 0.12 +0.6 228,803 + MPMX19_06454 0.12 -0.5 228,803 + MPMX19_06454 0.12 -0.2 228,804 - MPMX19_06454 0.12 +0.7 228,804 - MPMX19_06454 0.12 -0.5 228,804 - MPMX19_06454 0.12 +0.9 228,804 - MPMX19_06454 0.12 -1.1 228,804 - MPMX19_06454 0.12 +1.1 228,804 - MPMX19_06454 0.12 -0.1 228,948 + MPMX19_06454 0.20 -0.4 228,948 + MPMX19_06454 0.20 -0.7 228,948 + MPMX19_06454 0.20 -0.8 228,949 - MPMX19_06454 0.20 -0.5 228,999 + MPMX19_06454 0.23 -0.4 228,999 + MPMX19_06454 0.23 -0.0 228,999 + MPMX19_06454 0.23 -1.7 228,999 + MPMX19_06454 0.23 -1.2 229,000 - MPMX19_06454 0.23 -1.1 229,000 - MPMX19_06454 0.23 +1.2 229,000 - MPMX19_06454 0.23 -1.8 229,000 - MPMX19_06454 0.23 -1.3 229,000 - MPMX19_06454 0.23 -0.2 229,021 + MPMX19_06454 0.25 -2.8 229,057 - MPMX19_06454 0.27 -0.2 229,136 + MPMX19_06454 0.31 -0.5 229,137 - MPMX19_06454 0.32 +0.9 229,137 - MPMX19_06454 0.32 -1.8 229,137 - MPMX19_06454 0.32 +0.1 229,302 + MPMX19_06454 0.41 -0.6 229,302 + MPMX19_06454 0.41 -0.9 229,302 + MPMX19_06454 0.41 +0.0 229,303 - MPMX19_06454 0.41 -0.8 229,303 - MPMX19_06454 0.41 -0.6 229,303 - MPMX19_06454 0.41 -0.9 229,303 - MPMX19_06454 0.41 +1.1 229,303 - MPMX19_06454 0.41 +1.2 229,303 - MPMX19_06454 0.41 -0.7 229,303 - MPMX19_06454 0.41 -0.9 229,440 + MPMX19_06454 0.50 -1.0 229,441 - MPMX19_06454 0.50 +2.1 229,511 + MPMX19_06454 0.54 -2.5 229,511 + MPMX19_06454 0.54 -1.2 229,511 + MPMX19_06454 0.54 -1.3 229,511 + MPMX19_06454 0.54 -0.5 229,511 + MPMX19_06454 0.54 +0.4 229,511 + MPMX19_06454 0.54 +0.6 229,511 + MPMX19_06454 0.54 -2.1 229,511 + MPMX19_06454 0.54 -0.2 229,511 + MPMX19_06454 0.54 -1.1 229,511 + MPMX19_06454 0.54 -0.1 229,512 - MPMX19_06454 0.54 +0.9 229,512 - MPMX19_06454 0.54 -0.9 229,512 - MPMX19_06454 0.54 -0.9 229,512 - MPMX19_06454 0.54 -0.1 229,512 - MPMX19_06454 0.54 -1.3 229,603 + MPMX19_06454 0.59 +0.7 229,604 - MPMX19_06454 0.59 +3.1 229,604 - MPMX19_06454 0.59 -1.1 229,644 + MPMX19_06454 0.62 +0.2 229,644 + MPMX19_06454 0.62 -1.6 229,644 + MPMX19_06454 0.62 +1.4 229,644 + MPMX19_06454 0.62 +0.1 229,644 + MPMX19_06454 0.62 -1.7 229,644 + MPMX19_06454 0.62 +0.8 229,644 + MPMX19_06454 0.62 -1.1 229,644 + MPMX19_06454 0.62 -2.7 229,644 + MPMX19_06454 0.62 +0.0 229,644 + MPMX19_06454 0.62 -2.4 229,644 + MPMX19_06454 0.62 +1.1 229,644 + MPMX19_06454 0.62 -1.4 229,644 + MPMX19_06454 0.62 +0.2 229,644 + MPMX19_06454 0.62 -1.2 229,645 - MPMX19_06454 0.62 -0.1 229,645 - MPMX19_06454 0.62 +0.2 229,645 - MPMX19_06454 0.62 +0.4 229,645 - MPMX19_06454 0.62 +0.2 229,645 - MPMX19_06454 0.62 +1.2 229,645 - MPMX19_06454 0.62 +0.9 229,645 - MPMX19_06454 0.62 -1.2 229,645 - MPMX19_06454 0.62 +0.6 229,645 - MPMX19_06454 0.62 +0.5 229,645 - MPMX19_06454 0.62 -0.2 229,664 + MPMX19_06454 0.63 -0.7 229,664 + MPMX19_06454 0.63 +0.5 229,664 + MPMX19_06454 0.63 +0.4 229,665 - MPMX19_06454 0.63 +0.6 229,665 - MPMX19_06454 0.63 -0.9 229,665 - MPMX19_06454 0.63 -0.9 229,665 - MPMX19_06454 0.63 +0.7 229,723 + MPMX19_06454 0.66 -1.1 229,723 + MPMX19_06454 0.66 +0.1 229,723 + MPMX19_06454 0.66 +0.2 229,724 - MPMX19_06454 0.66 +0.5 229,738 + MPMX19_06454 0.67 +0.4 229,739 - MPMX19_06454 0.67 -0.0 229,853 - MPMX19_06454 0.74 -1.0 229,853 - MPMX19_06454 0.74 +0.1 229,974 + MPMX19_06454 0.81 +0.1 229,975 - MPMX19_06454 0.81 +0.6 229,975 - MPMX19_06454 0.81 -0.6 230,061 - MPMX19_06454 0.86 -1.0 230,091 + MPMX19_06454 0.88 -1.4 230,091 + MPMX19_06454 0.88 +0.0 230,092 - MPMX19_06454 0.88 -1.8 230,110 - MPMX19_06454 0.89 -1.4 230,110 - MPMX19_06454 0.89 -0.9 230,176 - -0.7 230,176 - -0.1 230,176 - +0.6 230,382 - -0.8 230,382 - -0.7 230,382 - +0.2 230,405 + -1.2 230,406 - +1.5 230,800 - MPMX19_06455 0.18 +0.4 230,823 + MPMX19_06455 0.20 -0.2 230,910 + MPMX19_06455 0.28 +0.2 230,910 + MPMX19_06455 0.28 +0.3 230,910 + MPMX19_06455 0.28 -1.7 230,910 + MPMX19_06455 0.28 -0.2 230,910 + MPMX19_06455 0.28 -0.6 230,910 + MPMX19_06455 0.28 -0.5 230,910 + MPMX19_06455 0.28 -0.9 230,910 + MPMX19_06455 0.28 -0.6 230,910 + MPMX19_06455 0.28 -0.7 230,911 - MPMX19_06455 0.28 -0.1 230,911 - MPMX19_06455 0.28 -0.9 230,911 - MPMX19_06455 0.28 +0.5 230,911 - MPMX19_06455 0.28 -0.2 230,911 - MPMX19_06455 0.28 +0.3 230,911 - MPMX19_06455 0.28 -0.7 230,911 - MPMX19_06455 0.28 -1.5 230,911 - MPMX19_06455 0.28 -1.4 230,911 - MPMX19_06455 0.28 +1.1
Or see this region's nucleotide sequence