Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06428 and MPMX19_06429 are separated by 103 nucleotides MPMX19_06429 and MPMX19_06430 are separated by 10 nucleotides
MPMX19_06428: MPMX19_06428 - hypothetical protein, at 200,794 to 201,204
_06428
MPMX19_06429: MPMX19_06429 - HTH-type transcriptional regulator HmrR, at 201,308 to 201,751
_06429
MPMX19_06430: MPMX19_06430 - Copper-exporting P-type ATPase, at 201,762 to 204,200
_06430
Position (kb) 201
202 Strain fitness (log2 ratio) -2
-1
0
1
2 at 200.574 kb on - strand at 200.795 kb on + strand at 200.796 kb on - strand at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.246 kb on + strand at 201.246 kb on + strand at 201.246 kb on + strand at 201.256 kb on + strand at 201.256 kb on + strand at 201.257 kb on - strand at 201.257 kb on - strand at 201.637 kb on - strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.696 kb on + strand, within MPMX19_06429 at 201.697 kb on - strand, within MPMX19_06429 at 201.730 kb on + strand at 201.730 kb on + strand at 201.730 kb on + strand at 201.730 kb on + strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.794 kb on + strand at 201.794 kb on + strand at 201.795 kb on - strand at 201.795 kb on - strand at 201.862 kb on + strand at 201.898 kb on + strand at 201.898 kb on + strand at 201.937 kb on + strand at 201.937 kb on + strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.983 kb on + strand at 201.983 kb on + strand at 202.550 kb on + strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.596 kb on + strand, within MPMX19_06430 at 202.596 kb on + strand, within MPMX19_06430 at 202.596 kb on + strand, within MPMX19_06430 at 202.596 kb on + strand, within MPMX19_06430 at 202.597 kb on - strand, within MPMX19_06430 at 202.597 kb on - strand, within MPMX19_06430 at 202.597 kb on - strand, within MPMX19_06430 at 202.597 kb on - strand, within MPMX19_06430 at 202.597 kb on - strand, within MPMX19_06430
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 200,574 - -1.6 200,795 + +0.5 200,796 - -0.5 201,027 + MPMX19_06428 0.57 +1.1 201,027 + MPMX19_06428 0.57 -0.3 201,027 + MPMX19_06428 0.57 -0.2 201,027 + MPMX19_06428 0.57 -0.6 201,027 + MPMX19_06428 0.57 -1.0 201,027 + MPMX19_06428 0.57 -1.4 201,027 + MPMX19_06428 0.57 -0.8 201,027 + MPMX19_06428 0.57 -0.7 201,027 + MPMX19_06428 0.57 +0.2 201,027 + MPMX19_06428 0.57 +0.5 201,027 + MPMX19_06428 0.57 -0.5 201,027 + MPMX19_06428 0.57 -0.8 201,027 + MPMX19_06428 0.57 +0.6 201,028 - MPMX19_06428 0.57 -0.1 201,028 - MPMX19_06428 0.57 +2.1 201,028 - MPMX19_06428 0.57 -0.1 201,028 - MPMX19_06428 0.57 -0.9 201,028 - MPMX19_06428 0.57 -1.1 201,047 + MPMX19_06428 0.62 -1.6 201,047 + MPMX19_06428 0.62 +1.5 201,047 + MPMX19_06428 0.62 -0.9 201,047 + MPMX19_06428 0.62 -0.6 201,048 - MPMX19_06428 0.62 -0.4 201,048 - MPMX19_06428 0.62 +0.8 201,048 - MPMX19_06428 0.62 +0.1 201,048 - MPMX19_06428 0.62 -0.6 201,048 - MPMX19_06428 0.62 -0.5 201,246 + +0.5 201,246 + -0.9 201,246 + -0.9 201,256 + -1.2 201,256 + -0.7 201,257 - +0.8 201,257 - +0.4 201,637 - MPMX19_06429 0.74 +1.0 201,693 + MPMX19_06429 0.87 -0.6 201,693 + MPMX19_06429 0.87 -2.2 201,693 + MPMX19_06429 0.87 +0.8 201,693 + MPMX19_06429 0.87 -0.5 201,693 + MPMX19_06429 0.87 +1.2 201,693 + MPMX19_06429 0.87 +0.5 201,693 + MPMX19_06429 0.87 +1.3 201,693 + MPMX19_06429 0.87 -0.9 201,694 - MPMX19_06429 0.87 -0.7 201,694 - MPMX19_06429 0.87 +0.3 201,694 - MPMX19_06429 0.87 +0.2 201,694 - MPMX19_06429 0.87 +1.3 201,696 + MPMX19_06429 0.87 -0.6 201,697 - MPMX19_06429 0.88 +0.6 201,730 + -1.0 201,730 + +0.1 201,730 + -0.6 201,730 + -0.4 201,731 - +0.3 201,731 - +0.3 201,731 - -2.3 201,731 - -0.1 201,731 - -2.3 201,731 - -1.5 201,731 - -1.1 201,794 + -0.5 201,794 + -0.2 201,795 - +0.2 201,795 - +0.4 201,862 + -0.6 201,898 + +0.4 201,898 + -0.1 201,937 + +0.7 201,937 + -0.0 201,938 - -0.9 201,938 - +1.1 201,938 - -1.4 201,938 - -1.1 201,938 - -0.4 201,983 + -0.2 201,983 + -2.5 202,550 + MPMX19_06430 0.32 -1.1 202,551 - MPMX19_06430 0.32 -0.0 202,551 - MPMX19_06430 0.32 -0.0 202,551 - MPMX19_06430 0.32 +1.5 202,551 - MPMX19_06430 0.32 -0.7 202,551 - MPMX19_06430 0.32 -0.6 202,551 - MPMX19_06430 0.32 +0.1 202,596 + MPMX19_06430 0.34 +0.9 202,596 + MPMX19_06430 0.34 -0.2 202,596 + MPMX19_06430 0.34 +0.3 202,596 + MPMX19_06430 0.34 +0.1 202,597 - MPMX19_06430 0.34 +0.1 202,597 - MPMX19_06430 0.34 +0.1 202,597 - MPMX19_06430 0.34 +1.0 202,597 - MPMX19_06430 0.34 -1.5 202,597 - MPMX19_06430 0.34 -1.7
Or see this region's nucleotide sequence