Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06381

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06380 and MPMX19_06381 are separated by 425 nucleotidesMPMX19_06381 and MPMX19_06382 are separated by 114 nucleotides MPMX19_06380: MPMX19_06380 - hypothetical protein, at 148,706 to 149,218 _06380 MPMX19_06381: MPMX19_06381 - putative manganese efflux pump MntP, at 149,644 to 150,210 _06381 MPMX19_06382: MPMX19_06382 - putative MFS-type transporter YfcJ, at 150,325 to 151,506 _06382 Position (kb) 149 150 151Strain fitness (log2 ratio) -2 -1 0 1 2at 148.648 kb on + strandat 148.648 kb on + strandat 148.648 kb on + strandat 148.648 kb on + strandat 148.649 kb on - strandat 148.649 kb on - strandat 148.649 kb on - strandat 148.649 kb on - strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.650 kb on + strandat 148.651 kb on - strandat 148.651 kb on - strandat 148.651 kb on - strandat 148.651 kb on - strandat 148.651 kb on - strandat 148.651 kb on - strandat 148.651 kb on - strandat 148.651 kb on - strandat 148.651 kb on - strandat 148.658 kb on + strandat 148.658 kb on + strandat 148.658 kb on + strandat 148.658 kb on + strandat 148.658 kb on + strandat 148.658 kb on + strandat 148.658 kb on + strandat 148.658 kb on + strandat 148.658 kb on + strandat 148.659 kb on - strandat 148.659 kb on - strandat 148.659 kb on - strandat 148.659 kb on - strandat 148.659 kb on - strandat 148.659 kb on - strandat 148.659 kb on - strandat 148.659 kb on - strandat 148.659 kb on - strandat 148.659 kb on - strandat 148.659 kb on - strandat 148.689 kb on + strandat 148.689 kb on + strandat 148.689 kb on + strandat 148.689 kb on + strandat 148.860 kb on - strand, within MPMX19_06380at 148.860 kb on - strand, within MPMX19_06380at 148.860 kb on - strand, within MPMX19_06380at 148.964 kb on + strand, within MPMX19_06380at 148.964 kb on + strand, within MPMX19_06380at 148.965 kb on - strand, within MPMX19_06380at 148.965 kb on - strand, within MPMX19_06380at 148.965 kb on - strand, within MPMX19_06380at 148.965 kb on - strand, within MPMX19_06380at 148.965 kb on - strand, within MPMX19_06380at 148.965 kb on - strand, within MPMX19_06380at 148.966 kb on + strand, within MPMX19_06380at 148.966 kb on + strand, within MPMX19_06380at 148.966 kb on + strand, within MPMX19_06380at 148.966 kb on + strand, within MPMX19_06380at 148.966 kb on + strand, within MPMX19_06380at 148.967 kb on - strand, within MPMX19_06380at 148.967 kb on - strand, within MPMX19_06380at 148.967 kb on - strand, within MPMX19_06380at 148.967 kb on - strand, within MPMX19_06380at 149.048 kb on + strand, within MPMX19_06380at 149.048 kb on + strand, within MPMX19_06380at 149.048 kb on + strand, within MPMX19_06380at 149.048 kb on + strand, within MPMX19_06380at 149.048 kb on + strand, within MPMX19_06380at 149.048 kb on + strand, within MPMX19_06380at 149.049 kb on - strand, within MPMX19_06380at 149.049 kb on - strand, within MPMX19_06380at 149.049 kb on - strand, within MPMX19_06380at 149.049 kb on - strand, within MPMX19_06380at 149.049 kb on - strand, within MPMX19_06380at 149.049 kb on - strand, within MPMX19_06380at 149.078 kb on + strand, within MPMX19_06380at 149.078 kb on + strand, within MPMX19_06380at 149.079 kb on - strand, within MPMX19_06380at 149.234 kb on + strandat 149.234 kb on + strandat 149.235 kb on - strandat 149.235 kb on - strandat 149.235 kb on - strandat 149.318 kb on + strandat 149.319 kb on - strandat 149.371 kb on - strandat 149.375 kb on + strandat 149.389 kb on + strandat 149.453 kb on + strandat 149.453 kb on + strandat 149.461 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.483 kb on + strandat 149.484 kb on - strandat 149.666 kb on + strandat 149.666 kb on + strandat 149.666 kb on + strandat 150.009 kb on - strand, within MPMX19_06381at 150.009 kb on - strand, within MPMX19_06381at 150.286 kb on + strandat 150.341 kb on + strandat 150.567 kb on + strand, within MPMX19_06382at 150.568 kb on + strand, within MPMX19_06382at 150.568 kb on + strand, within MPMX19_06382at 150.569 kb on - strand, within MPMX19_06382at 150.569 kb on - strand, within MPMX19_06382at 150.596 kb on + strand, within MPMX19_06382at 150.597 kb on - strand, within MPMX19_06382at 150.597 kb on - strand, within MPMX19_06382at 150.597 kb on - strand, within MPMX19_06382at 150.597 kb on - strand, within MPMX19_06382at 151.066 kb on + strand, within MPMX19_06382at 151.067 kb on - strand, within MPMX19_06382at 151.067 kb on - strand, within MPMX19_06382at 151.103 kb on - strand, within MPMX19_06382

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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148,648 + +0.8
148,648 + -0.5
148,648 + +0.4
148,648 + -0.6
148,649 - +0.4
148,649 - -0.6
148,649 - +0.3
148,649 - +0.1
148,650 + -0.8
148,650 + -0.5
148,650 + -0.6
148,650 + -0.3
148,650 + +0.3
148,650 + -0.1
148,650 + +0.9
148,650 + -0.5
148,650 + -1.1
148,650 + -0.4
148,650 + -1.4
148,650 + -1.1
148,650 + -0.7
148,651 - -1.7
148,651 - -0.0
148,651 - -0.8
148,651 - +1.0
148,651 - -0.3
148,651 - +1.1
148,651 - -0.1
148,651 - +0.5
148,651 - -1.8
148,658 + -0.0
148,658 + +1.2
148,658 + +1.8
148,658 + +0.2
148,658 + +1.6
148,658 + +0.1
148,658 + +0.8
148,658 + -0.4
148,658 + -0.8
148,659 - +1.4
148,659 - -1.3
148,659 - -0.6
148,659 - +0.0
148,659 - -0.5
148,659 - -1.9
148,659 - -0.8
148,659 - +0.1
148,659 - +1.8
148,659 - -0.5
148,659 - +0.1
148,689 + +1.4
148,689 + -0.3
148,689 + -0.7
148,689 + -1.2
148,860 - MPMX19_06380 0.30 +0.9
148,860 - MPMX19_06380 0.30 -0.2
148,860 - MPMX19_06380 0.30 -1.2
148,964 + MPMX19_06380 0.50 -1.8
148,964 + MPMX19_06380 0.50 -0.4
148,965 - MPMX19_06380 0.50 -0.3
148,965 - MPMX19_06380 0.50 +2.1
148,965 - MPMX19_06380 0.50 +0.2
148,965 - MPMX19_06380 0.50 -1.1
148,965 - MPMX19_06380 0.50 +1.1
148,965 - MPMX19_06380 0.50 +0.5
148,966 + MPMX19_06380 0.51 +0.1
148,966 + MPMX19_06380 0.51 -0.6
148,966 + MPMX19_06380 0.51 +0.4
148,966 + MPMX19_06380 0.51 +2.1
148,966 + MPMX19_06380 0.51 +0.6
148,967 - MPMX19_06380 0.51 +2.1
148,967 - MPMX19_06380 0.51 +2.1
148,967 - MPMX19_06380 0.51 -1.0
148,967 - MPMX19_06380 0.51 +0.4
149,048 + MPMX19_06380 0.67 -2.2
149,048 + MPMX19_06380 0.67 +0.4
149,048 + MPMX19_06380 0.67 +0.3
149,048 + MPMX19_06380 0.67 -1.4
149,048 + MPMX19_06380 0.67 -1.7
149,048 + MPMX19_06380 0.67 +0.4
149,049 - MPMX19_06380 0.67 +0.3
149,049 - MPMX19_06380 0.67 +0.4
149,049 - MPMX19_06380 0.67 +0.1
149,049 - MPMX19_06380 0.67 +0.5
149,049 - MPMX19_06380 0.67 -0.3
149,049 - MPMX19_06380 0.67 -0.5
149,078 + MPMX19_06380 0.73 +0.7
149,078 + MPMX19_06380 0.73 -1.7
149,079 - MPMX19_06380 0.73 +0.2
149,234 + -0.5
149,234 + -0.9
149,235 - -0.9
149,235 - -0.4
149,235 - -0.6
149,318 + +1.1
149,319 - +0.1
149,371 - -0.8
149,375 + -0.7
149,389 + -0.7
149,453 + +0.1
149,453 + +0.5
149,461 + -1.2
149,483 + +0.5
149,483 + -0.3
149,483 + -1.6
149,483 + -1.2
149,484 - -1.2
149,666 + +0.9
149,666 + +0.7
149,666 + +1.4
150,009 - MPMX19_06381 0.64 +0.5
150,009 - MPMX19_06381 0.64 -1.3
150,286 + -1.1
150,341 + -1.0
150,567 + MPMX19_06382 0.20 -1.4
150,568 + MPMX19_06382 0.21 -0.9
150,568 + MPMX19_06382 0.21 -2.2
150,569 - MPMX19_06382 0.21 -0.4
150,569 - MPMX19_06382 0.21 +1.1
150,596 + MPMX19_06382 0.23 -0.5
150,597 - MPMX19_06382 0.23 -2.2
150,597 - MPMX19_06382 0.23 -1.5
150,597 - MPMX19_06382 0.23 -0.9
150,597 - MPMX19_06382 0.23 -0.6
151,066 + MPMX19_06382 0.63 -0.7
151,067 - MPMX19_06382 0.63 +0.9
151,067 - MPMX19_06382 0.63 +0.7
151,103 - MPMX19_06382 0.66 -0.2

Or see this region's nucleotide sequence