Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06350

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06348 and MPMX19_06349 are separated by 42 nucleotidesMPMX19_06349 and MPMX19_06350 overlap by 8 nucleotidesMPMX19_06350 and MPMX19_06351 are separated by 12 nucleotidesMPMX19_06351 and MPMX19_06352 overlap by 4 nucleotides MPMX19_06348: MPMX19_06348 - NADPH-Fe(3+) oxidoreductase subunit beta, at 113,936 to 115,570 _06348 MPMX19_06349: MPMX19_06349 - NADPH-dependent FMN reductase ArsH, at 115,613 to 116,374 _06349 MPMX19_06350: MPMX19_06350 - Arsenical-resistance protein Acr3, at 116,367 to 117,440 _06350 MPMX19_06351: MPMX19_06351 - Arsenate reductase, at 117,453 to 117,887 _06351 MPMX19_06352: MPMX19_06352 - Arsenate reductase, at 117,884 to 118,402 _06352 Position (kb) 116 117 118Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 115.490 kb on + strandat 115.568 kb on + strandat 115.568 kb on + strandat 115.569 kb on - strandat 115.569 kb on - strandat 115.569 kb on - strandat 115.580 kb on + strandat 115.580 kb on + strandat 115.580 kb on + strandat 115.580 kb on + strandat 115.580 kb on + strandat 115.581 kb on - strandat 115.581 kb on - strandat 115.614 kb on + strandat 115.702 kb on - strand, within MPMX19_06349at 115.716 kb on + strand, within MPMX19_06349at 115.716 kb on + strand, within MPMX19_06349at 115.717 kb on - strand, within MPMX19_06349at 115.717 kb on - strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.754 kb on + strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.755 kb on - strand, within MPMX19_06349at 115.785 kb on + strand, within MPMX19_06349at 115.785 kb on + strand, within MPMX19_06349at 115.785 kb on + strand, within MPMX19_06349at 115.785 kb on + strand, within MPMX19_06349at 115.785 kb on + strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.786 kb on - strand, within MPMX19_06349at 115.788 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.220 kb on + strand, within MPMX19_06349at 116.221 kb on - strand, within MPMX19_06349at 116.221 kb on - strand, within MPMX19_06349at 116.221 kb on - strand, within MPMX19_06349at 116.221 kb on - strand, within MPMX19_06349at 116.244 kb on + strand, within MPMX19_06349at 116.244 kb on + strand, within MPMX19_06349at 116.244 kb on + strand, within MPMX19_06349at 116.245 kb on - strand, within MPMX19_06349at 116.319 kb on + strandat 116.319 kb on + strandat 116.319 kb on + strandat 116.320 kb on - strandat 116.320 kb on - strandat 116.320 kb on - strandat 116.320 kb on - strandat 116.320 kb on - strandat 116.320 kb on - strandat 116.389 kb on + strandat 116.390 kb on - strandat 116.602 kb on + strand, within MPMX19_06350at 116.602 kb on + strand, within MPMX19_06350at 116.602 kb on + strand, within MPMX19_06350at 116.603 kb on - strand, within MPMX19_06350at 116.603 kb on - strand, within MPMX19_06350at 116.624 kb on - strand, within MPMX19_06350at 116.624 kb on - strand, within MPMX19_06350at 116.762 kb on + strand, within MPMX19_06350at 116.763 kb on - strand, within MPMX19_06350at 116.843 kb on - strand, within MPMX19_06350at 116.843 kb on - strand, within MPMX19_06350at 116.843 kb on - strand, within MPMX19_06350at 116.843 kb on - strand, within MPMX19_06350at 116.971 kb on + strand, within MPMX19_06350at 116.972 kb on - strand, within MPMX19_06350at 116.972 kb on - strand, within MPMX19_06350at 116.972 kb on - strand, within MPMX19_06350at 117.379 kb on + strandat 117.379 kb on + strandat 117.379 kb on + strandat 117.379 kb on + strandat 117.379 kb on + strandat 117.380 kb on - strandat 117.380 kb on - strandat 117.787 kb on + strand, within MPMX19_06351at 117.787 kb on + strand, within MPMX19_06351at 117.787 kb on + strand, within MPMX19_06351at 117.788 kb on - strand, within MPMX19_06351at 117.788 kb on - strand, within MPMX19_06351at 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.868 kb on + strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.869 kb on - strandat 117.923 kb on - strandat 117.991 kb on + strand, within MPMX19_06352at 118.386 kb on + strandat 118.387 kb on - strandat 118.387 kb on - strandat 118.387 kb on - strandat 118.387 kb on - strandat 118.387 kb on - strandat 118.387 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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115,490 + -0.7
115,568 + -0.0
115,568 + +0.4
115,569 - -1.1
115,569 - -0.0
115,569 - -0.2
115,580 + -1.2
115,580 + +0.5
115,580 + -1.4
115,580 + +0.3
115,580 + -0.5
115,581 - -1.2
115,581 - -0.4
115,614 + +1.1
115,702 - MPMX19_06349 0.12 -0.9
115,716 + MPMX19_06349 0.14 -1.5
115,716 + MPMX19_06349 0.14 -0.2
115,717 - MPMX19_06349 0.14 -0.1
115,717 - MPMX19_06349 0.14 +0.4
115,754 + MPMX19_06349 0.19 +0.2
115,754 + MPMX19_06349 0.19 -1.1
115,754 + MPMX19_06349 0.19 +0.6
115,754 + MPMX19_06349 0.19 -1.0
115,754 + MPMX19_06349 0.19 -0.3
115,754 + MPMX19_06349 0.19 -0.5
115,754 + MPMX19_06349 0.19 -1.1
115,754 + MPMX19_06349 0.19 -0.0
115,754 + MPMX19_06349 0.19 -0.5
115,754 + MPMX19_06349 0.19 +0.5
115,755 - MPMX19_06349 0.19 -1.5
115,755 - MPMX19_06349 0.19 -0.6
115,755 - MPMX19_06349 0.19 -0.2
115,755 - MPMX19_06349 0.19 -0.3
115,755 - MPMX19_06349 0.19 -0.8
115,755 - MPMX19_06349 0.19 +0.5
115,785 + MPMX19_06349 0.23 -1.1
115,785 + MPMX19_06349 0.23 -2.2
115,785 + MPMX19_06349 0.23 +0.2
115,785 + MPMX19_06349 0.23 +0.8
115,785 + MPMX19_06349 0.23 -0.4
115,786 - MPMX19_06349 0.23 -2.2
115,786 - MPMX19_06349 0.23 +0.4
115,786 - MPMX19_06349 0.23 -0.3
115,786 - MPMX19_06349 0.23 +0.0
115,786 - MPMX19_06349 0.23 +1.0
115,786 - MPMX19_06349 0.23 +0.6
115,788 + MPMX19_06349 0.23 -1.1
116,220 + MPMX19_06349 0.80 -0.4
116,220 + MPMX19_06349 0.80 -0.7
116,220 + MPMX19_06349 0.80 +0.8
116,220 + MPMX19_06349 0.80 -0.3
116,220 + MPMX19_06349 0.80 -1.1
116,220 + MPMX19_06349 0.80 +0.5
116,220 + MPMX19_06349 0.80 -0.8
116,220 + MPMX19_06349 0.80 +0.4
116,221 - MPMX19_06349 0.80 -1.2
116,221 - MPMX19_06349 0.80 -0.8
116,221 - MPMX19_06349 0.80 -1.1
116,221 - MPMX19_06349 0.80 -3.4
116,244 + MPMX19_06349 0.83 -1.4
116,244 + MPMX19_06349 0.83 +0.7
116,244 + MPMX19_06349 0.83 -0.9
116,245 - MPMX19_06349 0.83 +0.4
116,319 + +0.5
116,319 + +0.9
116,319 + -0.7
116,320 - +0.1
116,320 - -1.2
116,320 - -0.1
116,320 - -0.4
116,320 - +0.6
116,320 - -0.7
116,389 + +0.6
116,390 - +0.4
116,602 + MPMX19_06350 0.22 -1.4
116,602 + MPMX19_06350 0.22 +0.3
116,602 + MPMX19_06350 0.22 -1.1
116,603 - MPMX19_06350 0.22 -1.3
116,603 - MPMX19_06350 0.22 -0.3
116,624 - MPMX19_06350 0.24 -1.6
116,624 - MPMX19_06350 0.24 -1.0
116,762 + MPMX19_06350 0.37 -1.3
116,763 - MPMX19_06350 0.37 +0.2
116,843 - MPMX19_06350 0.44 -0.2
116,843 - MPMX19_06350 0.44 -0.9
116,843 - MPMX19_06350 0.44 +1.4
116,843 - MPMX19_06350 0.44 -0.1
116,971 + MPMX19_06350 0.56 -1.4
116,972 - MPMX19_06350 0.56 -1.2
116,972 - MPMX19_06350 0.56 -0.1
116,972 - MPMX19_06350 0.56 +0.8
117,379 + -0.4
117,379 + -1.7
117,379 + +1.0
117,379 + -0.4
117,379 + +0.2
117,380 - -1.2
117,380 - -1.0
117,787 + MPMX19_06351 0.77 -0.8
117,787 + MPMX19_06351 0.77 -0.2
117,787 + MPMX19_06351 0.77 -0.1
117,788 - MPMX19_06351 0.77 +1.0
117,788 - MPMX19_06351 0.77 +0.9
117,868 + -0.2
117,868 + -0.1
117,868 + +0.4
117,868 + -0.4
117,868 + -0.8
117,868 + -0.1
117,868 + -1.1
117,868 + -0.8
117,868 + -1.1
117,868 + +0.5
117,868 + +0.9
117,868 + +0.2
117,868 + +1.0
117,868 + +0.4
117,869 - -1.5
117,869 - +0.8
117,869 - -0.2
117,869 - -2.0
117,869 - -0.6
117,869 - +0.7
117,869 - +2.1
117,869 - +0.5
117,869 - -1.8
117,869 - +0.6
117,923 - -0.8
117,991 + MPMX19_06352 0.21 +0.4
118,386 + +2.1
118,387 - -2.9
118,387 - +0.9
118,387 - +0.4
118,387 - +0.5
118,387 - +0.3
118,387 - +0.2

Or see this region's nucleotide sequence