Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06318 and MPMX19_06319 are separated by 360 nucleotides MPMX19_06319 and MPMX19_06320 are separated by 78 nucleotides MPMX19_06320 and MPMX19_06321 are separated by 130 nucleotides
MPMX19_06318: MPMX19_06318 - hypothetical protein, at 78,997 to 79,698
_06318
MPMX19_06319: MPMX19_06319 - hypothetical protein, at 80,059 to 80,220
_06319
MPMX19_06320: MPMX19_06320 - hypothetical protein, at 80,299 to 81,162
_06320
MPMX19_06321: MPMX19_06321 - hypothetical protein, at 81,293 to 82,435
_06321
Position (kb)
80
81
82 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 79.375 kb on + strand, within MPMX19_06318 at 79.375 kb on + strand, within MPMX19_06318 at 79.375 kb on + strand, within MPMX19_06318 at 79.376 kb on - strand, within MPMX19_06318 at 79.376 kb on - strand, within MPMX19_06318 at 79.376 kb on - strand, within MPMX19_06318 at 79.376 kb on - strand, within MPMX19_06318 at 79.540 kb on + strand, within MPMX19_06318 at 79.540 kb on + strand, within MPMX19_06318 at 79.541 kb on - strand, within MPMX19_06318 at 79.552 kb on + strand, within MPMX19_06318 at 79.552 kb on + strand, within MPMX19_06318 at 79.552 kb on + strand, within MPMX19_06318 at 79.552 kb on + strand, within MPMX19_06318 at 79.552 kb on + strand, within MPMX19_06318 at 79.552 kb on + strand, within MPMX19_06318 at 79.553 kb on - strand, within MPMX19_06318 at 79.553 kb on - strand, within MPMX19_06318 at 79.600 kb on + strand, within MPMX19_06318 at 79.600 kb on + strand, within MPMX19_06318 at 79.600 kb on + strand, within MPMX19_06318 at 79.600 kb on + strand, within MPMX19_06318 at 79.600 kb on + strand, within MPMX19_06318 at 79.600 kb on + strand, within MPMX19_06318 at 79.600 kb on + strand, within MPMX19_06318 at 79.600 kb on + strand, within MPMX19_06318 at 79.600 kb on + strand, within MPMX19_06318 at 79.600 kb on + strand, within MPMX19_06318 at 79.601 kb on - strand, within MPMX19_06318 at 79.601 kb on - strand, within MPMX19_06318 at 79.601 kb on - strand, within MPMX19_06318 at 79.686 kb on + strand at 79.687 kb on - strand at 79.774 kb on + strand at 79.774 kb on + strand at 79.975 kb on + strand at 79.975 kb on + strand at 79.976 kb on - strand at 79.976 kb on - strand at 80.213 kb on + strand at 80.214 kb on - strand at 80.214 kb on - strand at 80.257 kb on + strand at 80.258 kb on - strand at 80.298 kb on + strand at 80.298 kb on + strand at 80.298 kb on + strand at 80.298 kb on + strand at 80.298 kb on + strand at 80.298 kb on + strand at 80.299 kb on - strand at 80.299 kb on - strand at 80.299 kb on - strand at 80.299 kb on - strand at 80.299 kb on - strand at 80.299 kb on - strand at 80.299 kb on - strand at 80.299 kb on - strand at 80.299 kb on - strand at 80.523 kb on + strand, within MPMX19_06320 at 80.524 kb on - strand, within MPMX19_06320 at 80.524 kb on - strand, within MPMX19_06320 at 80.524 kb on - strand, within MPMX19_06320 at 80.560 kb on + strand, within MPMX19_06320 at 80.561 kb on - strand, within MPMX19_06320 at 80.561 kb on - strand, within MPMX19_06320 at 80.762 kb on + strand, within MPMX19_06320 at 80.763 kb on - strand, within MPMX19_06320 at 80.763 kb on - strand, within MPMX19_06320 at 80.763 kb on - strand, within MPMX19_06320 at 80.776 kb on + strand, within MPMX19_06320 at 80.776 kb on + strand, within MPMX19_06320 at 80.776 kb on + strand, within MPMX19_06320 at 80.776 kb on + strand, within MPMX19_06320 at 80.776 kb on + strand, within MPMX19_06320 at 81.167 kb on + strand at 81.180 kb on + strand at 81.180 kb on + strand at 81.180 kb on + strand at 81.180 kb on + strand at 81.181 kb on - strand at 81.181 kb on - strand at 81.181 kb on - strand at 81.181 kb on - strand at 81.183 kb on + strand at 81.183 kb on + strand at 81.184 kb on - strand at 81.280 kb on + strand at 81.280 kb on + strand at 81.280 kb on + strand at 81.280 kb on + strand at 81.280 kb on + strand at 81.280 kb on + strand at 81.280 kb on + strand at 81.281 kb on - strand at 81.281 kb on - strand at 81.281 kb on - strand at 81.281 kb on - strand at 81.281 kb on - strand at 81.281 kb on - strand at 81.281 kb on - strand at 81.281 kb on - strand at 81.281 kb on - strand at 81.281 kb on - strand at 81.359 kb on + strand at 81.359 kb on + strand at 81.360 kb on - strand at 81.360 kb on - strand at 81.360 kb on - strand at 81.360 kb on - strand at 81.360 kb on - strand at 81.360 kb on - strand at 81.369 kb on + strand at 81.369 kb on + strand at 81.369 kb on + strand at 81.369 kb on + strand at 81.370 kb on - strand at 81.370 kb on - strand at 81.370 kb on - strand at 81.370 kb on - strand at 81.370 kb on - strand at 81.370 kb on - strand at 81.370 kb on - strand at 81.540 kb on + strand, within MPMX19_06321 at 81.541 kb on - strand, within MPMX19_06321 at 81.541 kb on - strand, within MPMX19_06321 at 82.134 kb on + strand, within MPMX19_06321 at 82.134 kb on + strand, within MPMX19_06321 at 82.134 kb on + strand, within MPMX19_06321 at 82.134 kb on + strand, within MPMX19_06321 at 82.134 kb on + strand, within MPMX19_06321 at 82.134 kb on + strand, within MPMX19_06321 at 82.135 kb on - strand, within MPMX19_06321 at 82.135 kb on - strand, within MPMX19_06321 at 82.135 kb on - strand, within MPMX19_06321 at 82.135 kb on - strand, within MPMX19_06321 at 82.135 kb on - strand, within MPMX19_06321 at 82.142 kb on + strand, within MPMX19_06321
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 79,375 + MPMX19_06318 0.54 +1.6 79,375 + MPMX19_06318 0.54 +0.2 79,375 + MPMX19_06318 0.54 +0.7 79,376 - MPMX19_06318 0.54 +0.8 79,376 - MPMX19_06318 0.54 -0.6 79,376 - MPMX19_06318 0.54 -1.2 79,376 - MPMX19_06318 0.54 +0.2 79,540 + MPMX19_06318 0.77 +1.2 79,540 + MPMX19_06318 0.77 +0.5 79,541 - MPMX19_06318 0.77 +0.3 79,552 + MPMX19_06318 0.79 -0.2 79,552 + MPMX19_06318 0.79 +1.7 79,552 + MPMX19_06318 0.79 +0.5 79,552 + MPMX19_06318 0.79 -0.7 79,552 + MPMX19_06318 0.79 +0.2 79,552 + MPMX19_06318 0.79 -1.3 79,553 - MPMX19_06318 0.79 -1.0 79,553 - MPMX19_06318 0.79 -0.2 79,600 + MPMX19_06318 0.86 +0.0 79,600 + MPMX19_06318 0.86 -0.7 79,600 + MPMX19_06318 0.86 -0.6 79,600 + MPMX19_06318 0.86 -0.8 79,600 + MPMX19_06318 0.86 -0.1 79,600 + MPMX19_06318 0.86 -0.8 79,600 + MPMX19_06318 0.86 -1.1 79,600 + MPMX19_06318 0.86 -0.7 79,600 + MPMX19_06318 0.86 -0.3 79,600 + MPMX19_06318 0.86 -0.2 79,601 - MPMX19_06318 0.86 -0.5 79,601 - MPMX19_06318 0.86 +0.1 79,601 - MPMX19_06318 0.86 -0.7 79,686 + +1.7 79,687 - +0.2 79,774 + -1.1 79,774 + +0.7 79,975 + -1.3 79,975 + -1.4 79,976 - +0.5 79,976 - -0.7 80,213 + -0.3 80,214 - -0.1 80,214 - -1.2 80,257 + -0.6 80,258 - -0.7 80,298 + -0.4 80,298 + -0.6 80,298 + +0.3 80,298 + -0.1 80,298 + -1.4 80,298 + -1.0 80,299 - -0.4 80,299 - -0.3 80,299 - -1.3 80,299 - -1.6 80,299 - +0.3 80,299 - -0.0 80,299 - +0.5 80,299 - -0.7 80,299 - -0.7 80,523 + MPMX19_06320 0.26 -0.9 80,524 - MPMX19_06320 0.26 +0.7 80,524 - MPMX19_06320 0.26 -0.3 80,524 - MPMX19_06320 0.26 +0.2 80,560 + MPMX19_06320 0.30 -0.9 80,561 - MPMX19_06320 0.30 -1.6 80,561 - MPMX19_06320 0.30 +0.2 80,762 + MPMX19_06320 0.54 -1.9 80,763 - MPMX19_06320 0.54 -0.5 80,763 - MPMX19_06320 0.54 +0.5 80,763 - MPMX19_06320 0.54 +0.2 80,776 + MPMX19_06320 0.55 +0.2 80,776 + MPMX19_06320 0.55 -0.9 80,776 + MPMX19_06320 0.55 -0.5 80,776 + MPMX19_06320 0.55 +0.7 80,776 + MPMX19_06320 0.55 -0.8 81,167 + -1.1 81,180 + -1.4 81,180 + -1.1 81,180 + -0.4 81,180 + -0.3 81,181 - -1.0 81,181 - -0.7 81,181 - -0.1 81,181 - +0.8 81,183 + -2.0 81,183 + -0.1 81,184 - +1.3 81,280 + -2.0 81,280 + -2.8 81,280 + -2.7 81,280 + +0.5 81,280 + -0.5 81,280 + -2.1 81,280 + -0.1 81,281 - +1.0 81,281 - -0.1 81,281 - -0.4 81,281 - -0.7 81,281 - -1.3 81,281 - +1.5 81,281 - +1.4 81,281 - +0.6 81,281 - +1.6 81,281 - +0.1 81,359 + -0.4 81,359 + -0.7 81,360 - +1.3 81,360 - -0.2 81,360 - +0.1 81,360 - +0.5 81,360 - -1.0 81,360 - -1.9 81,369 + -1.2 81,369 + -0.9 81,369 + -1.3 81,369 + -0.2 81,370 - +1.4 81,370 - -1.1 81,370 - -0.1 81,370 - +0.4 81,370 - -0.4 81,370 - -1.6 81,370 - -0.6 81,540 + MPMX19_06321 0.22 -0.8 81,541 - MPMX19_06321 0.22 -1.5 81,541 - MPMX19_06321 0.22 -0.2 82,134 + MPMX19_06321 0.74 +0.3 82,134 + MPMX19_06321 0.74 -1.7 82,134 + MPMX19_06321 0.74 +0.9 82,134 + MPMX19_06321 0.74 -1.2 82,134 + MPMX19_06321 0.74 -0.2 82,134 + MPMX19_06321 0.74 -0.1 82,135 - MPMX19_06321 0.74 -1.2 82,135 - MPMX19_06321 0.74 -0.0 82,135 - MPMX19_06321 0.74 -0.3 82,135 - MPMX19_06321 0.74 -1.9 82,135 - MPMX19_06321 0.74 -1.4 82,142 + MPMX19_06321 0.74 -0.7
Or see this region's nucleotide sequence