Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06237

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06235 and MPMX19_06236 are separated by 175 nucleotidesMPMX19_06236 and MPMX19_06237 overlap by 53 nucleotidesMPMX19_06237 and MPMX19_06238 are separated by 230 nucleotidesMPMX19_06238 and MPMX19_06239 overlap by 26 nucleotides MPMX19_06235: MPMX19_06235 - Glycine cleavage system transcriptional activator, at 424,982 to 425,878 _06235 MPMX19_06236: MPMX19_06236 - hypothetical protein, at 426,054 to 426,248 _06236 MPMX19_06237: MPMX19_06237 - hypothetical protein, at 426,196 to 427,155 _06237 MPMX19_06238: MPMX19_06238 - L-aspartate/glutamate-specific racemase, at 427,386 to 428,111 _06238 MPMX19_06239: MPMX19_06239 - Transcriptional regulatory protein BtsR, at 428,086 to 428,814 _06239 Position (kb) 426 427 428Strain fitness (log2 ratio) -2 -1 0 1 2 3at 425.324 kb on + strand, within MPMX19_06235at 425.325 kb on - strand, within MPMX19_06235at 425.643 kb on + strand, within MPMX19_06235at 425.643 kb on + strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 426.004 kb on + strandat 426.005 kb on - strandat 426.005 kb on - strandat 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.129 kb on + strand, within MPMX19_06236at 426.130 kb on - strand, within MPMX19_06236at 426.130 kb on - strand, within MPMX19_06236at 426.130 kb on - strand, within MPMX19_06236at 426.335 kb on + strand, within MPMX19_06237at 426.335 kb on + strand, within MPMX19_06237at 426.380 kb on + strand, within MPMX19_06237at 426.380 kb on + strand, within MPMX19_06237at 426.380 kb on + strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.381 kb on - strand, within MPMX19_06237at 426.383 kb on + strand, within MPMX19_06237at 426.383 kb on + strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.384 kb on - strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.425 kb on + strand, within MPMX19_06237at 426.426 kb on - strand, within MPMX19_06237at 426.455 kb on + strand, within MPMX19_06237at 426.455 kb on + strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.456 kb on - strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.536 kb on + strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.537 kb on - strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.557 kb on + strand, within MPMX19_06237at 426.558 kb on - strand, within MPMX19_06237at 426.558 kb on - strand, within MPMX19_06237at 426.641 kb on + strand, within MPMX19_06237at 426.642 kb on - strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.058 kb on + strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.059 kb on - strand, within MPMX19_06237at 427.109 kb on + strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.110 kb on - strandat 427.250 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.274 kb on + strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.275 kb on - strandat 427.443 kb on + strandat 427.444 kb on - strandat 427.446 kb on + strandat 427.446 kb on + strandat 427.447 kb on - strandat 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.791 kb on + strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.792 kb on - strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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425,324 + MPMX19_06235 0.38 +1.1
425,325 - MPMX19_06235 0.38 +0.7
425,643 + MPMX19_06235 0.74 +0.1
425,643 + MPMX19_06235 0.74 +0.1
425,644 - MPMX19_06235 0.74 -0.9
425,644 - MPMX19_06235 0.74 +1.0
425,644 - MPMX19_06235 0.74 -1.2
425,787 - MPMX19_06235 0.90 +0.3
425,787 - MPMX19_06235 0.90 -1.0
425,787 - MPMX19_06235 0.90 -2.0
426,004 + -0.5
426,005 - -2.2
426,005 - -0.6
426,129 + MPMX19_06236 0.38 -1.3
426,129 + MPMX19_06236 0.38 -1.3
426,129 + MPMX19_06236 0.38 +0.2
426,129 + MPMX19_06236 0.38 -0.2
426,129 + MPMX19_06236 0.38 +0.3
426,129 + MPMX19_06236 0.38 -0.9
426,130 - MPMX19_06236 0.39 -0.7
426,130 - MPMX19_06236 0.39 +0.7
426,130 - MPMX19_06236 0.39 -1.8
426,335 + MPMX19_06237 0.14 +0.4
426,335 + MPMX19_06237 0.14 +0.2
426,380 + MPMX19_06237 0.19 -0.2
426,380 + MPMX19_06237 0.19 -0.2
426,380 + MPMX19_06237 0.19 -0.3
426,381 - MPMX19_06237 0.19 -1.4
426,381 - MPMX19_06237 0.19 -0.6
426,381 - MPMX19_06237 0.19 -1.2
426,381 - MPMX19_06237 0.19 -1.0
426,381 - MPMX19_06237 0.19 +1.7
426,383 + MPMX19_06237 0.19 -1.2
426,383 + MPMX19_06237 0.19 -1.4
426,384 - MPMX19_06237 0.20 +0.0
426,384 - MPMX19_06237 0.20 -0.5
426,384 - MPMX19_06237 0.20 -0.3
426,384 - MPMX19_06237 0.20 +0.0
426,384 - MPMX19_06237 0.20 +1.1
426,425 + MPMX19_06237 0.24 -2.2
426,425 + MPMX19_06237 0.24 -0.8
426,425 + MPMX19_06237 0.24 -1.2
426,425 + MPMX19_06237 0.24 +0.2
426,426 - MPMX19_06237 0.24 +0.4
426,455 + MPMX19_06237 0.27 +1.5
426,455 + MPMX19_06237 0.27 +0.0
426,456 - MPMX19_06237 0.27 -0.8
426,456 - MPMX19_06237 0.27 +0.5
426,456 - MPMX19_06237 0.27 -0.9
426,456 - MPMX19_06237 0.27 +0.0
426,456 - MPMX19_06237 0.27 -0.4
426,456 - MPMX19_06237 0.27 -0.1
426,456 - MPMX19_06237 0.27 +0.6
426,456 - MPMX19_06237 0.27 +0.4
426,456 - MPMX19_06237 0.27 +0.0
426,456 - MPMX19_06237 0.27 +0.0
426,456 - MPMX19_06237 0.27 +1.4
426,456 - MPMX19_06237 0.27 +0.1
426,536 + MPMX19_06237 0.35 -0.6
426,536 + MPMX19_06237 0.35 -1.4
426,536 + MPMX19_06237 0.35 +1.6
426,536 + MPMX19_06237 0.35 +0.3
426,536 + MPMX19_06237 0.35 -0.1
426,537 - MPMX19_06237 0.36 +0.9
426,537 - MPMX19_06237 0.36 -2.0
426,537 - MPMX19_06237 0.36 +2.8
426,537 - MPMX19_06237 0.36 -1.1
426,537 - MPMX19_06237 0.36 -1.2
426,537 - MPMX19_06237 0.36 +0.0
426,537 - MPMX19_06237 0.36 -0.4
426,537 - MPMX19_06237 0.36 +0.8
426,537 - MPMX19_06237 0.36 +0.1
426,537 - MPMX19_06237 0.36 -0.7
426,557 + MPMX19_06237 0.38 -0.1
426,557 + MPMX19_06237 0.38 -0.2
426,557 + MPMX19_06237 0.38 +0.4
426,557 + MPMX19_06237 0.38 +0.1
426,558 - MPMX19_06237 0.38 -0.3
426,558 - MPMX19_06237 0.38 -0.3
426,641 + MPMX19_06237 0.46 -1.0
426,642 - MPMX19_06237 0.46 +0.9
427,058 + MPMX19_06237 0.90 -0.0
427,058 + MPMX19_06237 0.90 -1.5
427,058 + MPMX19_06237 0.90 -0.3
427,058 + MPMX19_06237 0.90 -0.8
427,058 + MPMX19_06237 0.90 -1.0
427,058 + MPMX19_06237 0.90 +0.4
427,058 + MPMX19_06237 0.90 -2.2
427,059 - MPMX19_06237 0.90 +1.0
427,059 - MPMX19_06237 0.90 -0.3
427,059 - MPMX19_06237 0.90 -1.3
427,059 - MPMX19_06237 0.90 -1.0
427,059 - MPMX19_06237 0.90 +0.0
427,059 - MPMX19_06237 0.90 -1.2
427,059 - MPMX19_06237 0.90 -1.0
427,059 - MPMX19_06237 0.90 -0.2
427,059 - MPMX19_06237 0.90 -1.2
427,059 - MPMX19_06237 0.90 +0.2
427,109 + -1.0
427,110 - -0.9
427,110 - +0.4
427,110 - -0.2
427,110 - -0.8
427,250 + -0.8
427,274 + +0.0
427,274 + -0.4
427,274 + +0.8
427,274 + -0.8
427,274 + -1.0
427,274 + -0.6
427,274 + +0.2
427,275 - +0.0
427,275 - +0.3
427,275 - -0.6
427,275 - -2.2
427,275 - +0.6
427,275 - -1.0
427,275 - +1.0
427,443 + +0.2
427,444 - +0.6
427,446 + -0.8
427,446 + -1.7
427,447 - +1.6
427,791 + MPMX19_06238 0.56 +1.5
427,791 + MPMX19_06238 0.56 -0.6
427,791 + MPMX19_06238 0.56 +0.0
427,791 + MPMX19_06238 0.56 -0.8
427,791 + MPMX19_06238 0.56 -0.2
427,791 + MPMX19_06238 0.56 -1.3
427,791 + MPMX19_06238 0.56 +0.1
427,791 + MPMX19_06238 0.56 -0.2
427,791 + MPMX19_06238 0.56 +0.8
427,791 + MPMX19_06238 0.56 +0.2
427,791 + MPMX19_06238 0.56 -1.2
427,791 + MPMX19_06238 0.56 -0.1
427,791 + MPMX19_06238 0.56 -1.8
427,791 + MPMX19_06238 0.56 +0.0
427,792 - MPMX19_06238 0.56 +1.2
427,792 - MPMX19_06238 0.56 -1.9
427,792 - MPMX19_06238 0.56 -0.8
427,792 - MPMX19_06238 0.56 -0.8
427,792 - MPMX19_06238 0.56 +0.8
427,792 - MPMX19_06238 0.56 -1.7
427,792 - MPMX19_06238 0.56 +0.4
427,792 - MPMX19_06238 0.56 +1.4
427,792 - MPMX19_06238 0.56 +0.0
427,792 - MPMX19_06238 0.56 -1.1
427,792 - MPMX19_06238 0.56 -0.4
427,792 - MPMX19_06238 0.56 -0.9
427,792 - MPMX19_06238 0.56 -0.2
427,875 + MPMX19_06238 0.67 -0.2
427,875 + MPMX19_06238 0.67 -0.8
427,875 + MPMX19_06238 0.67 -0.1
427,876 - MPMX19_06238 0.67 +1.4
427,876 - MPMX19_06238 0.67 -1.2
427,876 - MPMX19_06238 0.67 -0.6

Or see this region's nucleotide sequence