Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06220

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06219 and MPMX19_06220 are separated by 196 nucleotidesMPMX19_06220 and MPMX19_06221 are separated by 43 nucleotides MPMX19_06219: MPMX19_06219 - hypothetical protein, at 402,901 to 404,058 _06219 MPMX19_06220: MPMX19_06220 - Alpha-ketoglutaric semialdehyde dehydrogenase 2, at 404,255 to 405,835 _06220 MPMX19_06221: MPMX19_06221 - L-2-keto-3-deoxyarabonate dehydratase, at 405,879 to 406,805 _06221 Position (kb) 404 405 406Strain fitness (log2 ratio) -2 -1 0 1 2at 403.343 kb on + strand, within MPMX19_06219at 403.343 kb on + strand, within MPMX19_06219at 403.343 kb on + strand, within MPMX19_06219at 403.343 kb on + strand, within MPMX19_06219at 403.343 kb on + strand, within MPMX19_06219at 403.343 kb on + strand, within MPMX19_06219at 403.344 kb on - strand, within MPMX19_06219at 403.344 kb on - strand, within MPMX19_06219at 403.388 kb on + strand, within MPMX19_06219at 403.388 kb on + strand, within MPMX19_06219at 403.388 kb on + strand, within MPMX19_06219at 403.388 kb on + strand, within MPMX19_06219at 403.388 kb on + strand, within MPMX19_06219at 403.389 kb on - strand, within MPMX19_06219at 403.389 kb on - strand, within MPMX19_06219at 403.389 kb on - strand, within MPMX19_06219at 403.389 kb on - strand, within MPMX19_06219at 403.389 kb on - strand, within MPMX19_06219at 403.389 kb on - strand, within MPMX19_06219at 403.389 kb on - strand, within MPMX19_06219at 403.389 kb on - strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.406 kb on + strand, within MPMX19_06219at 403.407 kb on - strand, within MPMX19_06219at 403.407 kb on - strand, within MPMX19_06219at 403.407 kb on - strand, within MPMX19_06219at 403.407 kb on - strand, within MPMX19_06219at 403.407 kb on - strand, within MPMX19_06219at 403.407 kb on - strand, within MPMX19_06219at 403.407 kb on - strand, within MPMX19_06219at 403.419 kb on - strand, within MPMX19_06219at 403.473 kb on + strand, within MPMX19_06219at 403.473 kb on + strand, within MPMX19_06219at 403.474 kb on - strand, within MPMX19_06219at 403.474 kb on - strand, within MPMX19_06219at 403.499 kb on + strand, within MPMX19_06219at 403.500 kb on - strand, within MPMX19_06219at 403.500 kb on - strand, within MPMX19_06219at 403.500 kb on - strand, within MPMX19_06219at 403.541 kb on + strand, within MPMX19_06219at 403.541 kb on + strand, within MPMX19_06219at 403.541 kb on + strand, within MPMX19_06219at 403.541 kb on + strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.542 kb on - strand, within MPMX19_06219at 403.827 kb on - strand, within MPMX19_06219at 403.928 kb on + strand, within MPMX19_06219at 403.928 kb on + strand, within MPMX19_06219at 403.928 kb on + strand, within MPMX19_06219at 403.928 kb on + strand, within MPMX19_06219at 403.929 kb on - strand, within MPMX19_06219at 403.929 kb on - strand, within MPMX19_06219at 403.929 kb on - strand, within MPMX19_06219at 403.943 kb on + strandat 404.072 kb on - strandat 404.256 kb on + strandat 404.256 kb on + strandat 404.256 kb on + strandat 404.257 kb on - strandat 404.257 kb on - strandat 405.048 kb on + strand, within MPMX19_06220at 405.048 kb on + strand, within MPMX19_06220at 405.048 kb on + strand, within MPMX19_06220at 405.048 kb on + strand, within MPMX19_06220at 405.850 kb on + strandat 405.850 kb on + strandat 405.850 kb on + strandat 405.851 kb on - strandat 405.851 kb on - strandat 405.851 kb on - strandat 405.851 kb on - strandat 405.851 kb on - strandat 405.851 kb on - strandat 406.078 kb on + strand, within MPMX19_06221at 406.078 kb on + strand, within MPMX19_06221at 406.079 kb on - strand, within MPMX19_06221at 406.079 kb on - strand, within MPMX19_06221at 406.114 kb on + strand, within MPMX19_06221at 406.115 kb on - strand, within MPMX19_06221at 406.115 kb on - strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.303 kb on + strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.304 kb on - strand, within MPMX19_06221at 406.471 kb on + strand, within MPMX19_06221at 406.471 kb on + strand, within MPMX19_06221at 406.472 kb on - strand, within MPMX19_06221at 406.472 kb on - strand, within MPMX19_06221at 406.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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403,343 + MPMX19_06219 0.38 -1.1
403,343 + MPMX19_06219 0.38 -0.5
403,343 + MPMX19_06219 0.38 +0.4
403,343 + MPMX19_06219 0.38 -0.4
403,343 + MPMX19_06219 0.38 -2.1
403,343 + MPMX19_06219 0.38 -0.1
403,344 - MPMX19_06219 0.38 +0.0
403,344 - MPMX19_06219 0.38 +1.2
403,388 + MPMX19_06219 0.42 +0.0
403,388 + MPMX19_06219 0.42 -0.9
403,388 + MPMX19_06219 0.42 +0.1
403,388 + MPMX19_06219 0.42 +0.9
403,388 + MPMX19_06219 0.42 -2.1
403,389 - MPMX19_06219 0.42 +1.2
403,389 - MPMX19_06219 0.42 -0.1
403,389 - MPMX19_06219 0.42 +0.6
403,389 - MPMX19_06219 0.42 -2.2
403,389 - MPMX19_06219 0.42 -2.1
403,389 - MPMX19_06219 0.42 -0.5
403,389 - MPMX19_06219 0.42 +2.0
403,389 - MPMX19_06219 0.42 -1.9
403,406 + MPMX19_06219 0.44 +1.2
403,406 + MPMX19_06219 0.44 -0.5
403,406 + MPMX19_06219 0.44 +0.1
403,406 + MPMX19_06219 0.44 -0.3
403,406 + MPMX19_06219 0.44 -0.2
403,406 + MPMX19_06219 0.44 -0.5
403,406 + MPMX19_06219 0.44 +0.2
403,406 + MPMX19_06219 0.44 -1.0
403,406 + MPMX19_06219 0.44 +0.4
403,406 + MPMX19_06219 0.44 +0.4
403,406 + MPMX19_06219 0.44 -1.0
403,407 - MPMX19_06219 0.44 -0.9
403,407 - MPMX19_06219 0.44 +1.3
403,407 - MPMX19_06219 0.44 +1.0
403,407 - MPMX19_06219 0.44 -1.8
403,407 - MPMX19_06219 0.44 -0.6
403,407 - MPMX19_06219 0.44 -0.0
403,407 - MPMX19_06219 0.44 +0.8
403,419 - MPMX19_06219 0.45 -0.5
403,473 + MPMX19_06219 0.49 -1.4
403,473 + MPMX19_06219 0.49 +0.3
403,474 - MPMX19_06219 0.49 -0.3
403,474 - MPMX19_06219 0.49 -0.3
403,499 + MPMX19_06219 0.52 +1.4
403,500 - MPMX19_06219 0.52 -0.2
403,500 - MPMX19_06219 0.52 -0.5
403,500 - MPMX19_06219 0.52 -0.6
403,541 + MPMX19_06219 0.55 -1.2
403,541 + MPMX19_06219 0.55 +0.4
403,541 + MPMX19_06219 0.55 -0.1
403,541 + MPMX19_06219 0.55 +0.4
403,542 - MPMX19_06219 0.55 -0.1
403,542 - MPMX19_06219 0.55 +0.9
403,542 - MPMX19_06219 0.55 +0.6
403,542 - MPMX19_06219 0.55 -1.0
403,542 - MPMX19_06219 0.55 -0.7
403,542 - MPMX19_06219 0.55 -1.6
403,542 - MPMX19_06219 0.55 +1.4
403,542 - MPMX19_06219 0.55 +0.4
403,542 - MPMX19_06219 0.55 -0.8
403,542 - MPMX19_06219 0.55 +0.6
403,542 - MPMX19_06219 0.55 +1.4
403,827 - MPMX19_06219 0.80 -1.3
403,928 + MPMX19_06219 0.89 -0.4
403,928 + MPMX19_06219 0.89 -0.1
403,928 + MPMX19_06219 0.89 -0.6
403,928 + MPMX19_06219 0.89 -1.7
403,929 - MPMX19_06219 0.89 -1.5
403,929 - MPMX19_06219 0.89 +0.2
403,929 - MPMX19_06219 0.89 +0.3
403,943 + -0.8
404,072 - -0.3
404,256 + +0.1
404,256 + -0.2
404,256 + -2.2
404,257 - -0.6
404,257 - -0.6
405,048 + MPMX19_06220 0.50 +1.4
405,048 + MPMX19_06220 0.50 -0.2
405,048 + MPMX19_06220 0.50 -0.3
405,048 + MPMX19_06220 0.50 +0.0
405,850 + +0.6
405,850 + -0.8
405,850 + -0.4
405,851 - +0.0
405,851 - +0.8
405,851 - +0.0
405,851 - +0.0
405,851 - -0.6
405,851 - -0.1
406,078 + MPMX19_06221 0.21 +0.8
406,078 + MPMX19_06221 0.21 -0.3
406,079 - MPMX19_06221 0.22 -0.6
406,079 - MPMX19_06221 0.22 -0.8
406,114 + MPMX19_06221 0.25 -1.0
406,115 - MPMX19_06221 0.25 -0.7
406,115 - MPMX19_06221 0.25 -0.5
406,303 + MPMX19_06221 0.46 -1.1
406,303 + MPMX19_06221 0.46 -0.3
406,303 + MPMX19_06221 0.46 -1.7
406,303 + MPMX19_06221 0.46 +1.0
406,304 - MPMX19_06221 0.46 +0.8
406,304 - MPMX19_06221 0.46 +0.6
406,304 - MPMX19_06221 0.46 -0.3
406,304 - MPMX19_06221 0.46 +0.7
406,471 + MPMX19_06221 0.64 -0.1
406,471 + MPMX19_06221 0.64 +0.4
406,472 - MPMX19_06221 0.64 +0.7
406,472 - MPMX19_06221 0.64 +0.4
406,811 + -0.6

Or see this region's nucleotide sequence