Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06159 and MPMX19_06160 are separated by 13 nucleotides MPMX19_06160 and MPMX19_06161 are separated by 66 nucleotides MPMX19_06161 and MPMX19_06162 are separated by 97 nucleotides
MPMX19_06159: MPMX19_06159 - N-carbamoyl-L-amino acid hydrolase, at 343,979 to 345,241
_06159
MPMX19_06160: MPMX19_06160 - Succinyl-diaminopimelate desuccinylase, at 345,255 to 346,508
_06160
MPMX19_06161: MPMX19_06161 - hypothetical protein, at 346,575 to 347,102
_06161
MPMX19_06162: MPMX19_06162 - hypothetical protein, at 347,200 to 348,996
_06162
Position (kb) 345
346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 344.267 kb on + strand, within MPMX19_06159 at 344.267 kb on + strand, within MPMX19_06159 at 344.268 kb on - strand, within MPMX19_06159 at 344.268 kb on - strand, within MPMX19_06159 at 344.268 kb on - strand, within MPMX19_06159 at 344.268 kb on - strand, within MPMX19_06159 at 344.531 kb on + strand, within MPMX19_06159 at 344.531 kb on + strand, within MPMX19_06159 at 344.531 kb on + strand, within MPMX19_06159 at 344.531 kb on + strand, within MPMX19_06159 at 344.531 kb on + strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.532 kb on - strand, within MPMX19_06159 at 344.555 kb on + strand, within MPMX19_06159 at 344.555 kb on + strand, within MPMX19_06159 at 344.555 kb on + strand, within MPMX19_06159 at 344.555 kb on + strand, within MPMX19_06159 at 344.556 kb on - strand, within MPMX19_06159 at 344.556 kb on - strand, within MPMX19_06159 at 344.556 kb on - strand, within MPMX19_06159 at 344.556 kb on - strand, within MPMX19_06159 at 345.192 kb on + strand at 345.192 kb on + strand at 345.527 kb on + strand, within MPMX19_06160 at 345.527 kb on + strand, within MPMX19_06160 at 345.527 kb on + strand, within MPMX19_06160 at 345.527 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.621 kb on + strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.622 kb on - strand, within MPMX19_06160 at 345.663 kb on + strand, within MPMX19_06160 at 345.663 kb on + strand, within MPMX19_06160 at 345.663 kb on + strand, within MPMX19_06160 at 345.663 kb on + strand, within MPMX19_06160 at 345.664 kb on - strand, within MPMX19_06160 at 345.664 kb on - strand, within MPMX19_06160 at 345.664 kb on - strand, within MPMX19_06160 at 345.664 kb on - strand, within MPMX19_06160 at 345.664 kb on - strand, within MPMX19_06160 at 345.735 kb on + strand, within MPMX19_06160 at 345.735 kb on + strand, within MPMX19_06160 at 345.735 kb on + strand, within MPMX19_06160 at 345.735 kb on + strand, within MPMX19_06160 at 345.736 kb on - strand, within MPMX19_06160 at 345.736 kb on - strand, within MPMX19_06160 at 345.804 kb on + strand, within MPMX19_06160 at 345.960 kb on + strand, within MPMX19_06160 at 345.960 kb on + strand, within MPMX19_06160 at 345.960 kb on + strand, within MPMX19_06160 at 345.960 kb on + strand, within MPMX19_06160 at 345.960 kb on + strand, within MPMX19_06160 at 345.960 kb on + strand, within MPMX19_06160 at 345.960 kb on + strand, within MPMX19_06160 at 345.960 kb on + strand, within MPMX19_06160 at 345.961 kb on - strand, within MPMX19_06160 at 345.961 kb on - strand, within MPMX19_06160 at 345.961 kb on - strand, within MPMX19_06160 at 345.961 kb on - strand, within MPMX19_06160 at 346.320 kb on + strand, within MPMX19_06160 at 346.320 kb on + strand, within MPMX19_06160 at 346.320 kb on + strand, within MPMX19_06160 at 346.321 kb on - strand, within MPMX19_06160 at 346.321 kb on - strand, within MPMX19_06160 at 346.338 kb on + strand, within MPMX19_06160 at 346.339 kb on - strand, within MPMX19_06160 at 346.368 kb on + strand, within MPMX19_06160 at 346.369 kb on - strand, within MPMX19_06160 at 346.369 kb on - strand, within MPMX19_06160 at 346.369 kb on - strand, within MPMX19_06160 at 346.506 kb on + strand at 346.506 kb on + strand at 346.506 kb on + strand at 346.523 kb on + strand at 346.523 kb on + strand at 346.523 kb on + strand at 346.524 kb on - strand at 346.528 kb on + strand at 346.528 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.541 kb on + strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.542 kb on - strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.597 kb on + strand at 346.598 kb on - strand at 346.598 kb on - strand at 346.598 kb on - strand at 346.598 kb on - strand at 346.598 kb on - strand at 346.598 kb on - strand at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.654 kb on + strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 346.655 kb on - strand, within MPMX19_06161 at 347.021 kb on - strand, within MPMX19_06161 at 347.056 kb on + strand at 347.056 kb on + strand at 347.057 kb on - strand at 347.057 kb on - strand at 347.057 kb on - strand at 347.168 kb on + strand at 347.168 kb on + strand at 347.168 kb on + strand at 347.168 kb on + strand at 347.168 kb on + strand at 347.169 kb on - strand at 347.169 kb on - strand at 347.169 kb on - strand at 347.169 kb on - strand at 347.202 kb on - strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.239 kb on + strand at 347.240 kb on - strand at 347.240 kb on - strand at 347.240 kb on - strand at 347.240 kb on - strand at 347.240 kb on - strand at 347.240 kb on - strand at 347.384 kb on + strand, within MPMX19_06162 at 347.384 kb on + strand, within MPMX19_06162 at 347.385 kb on - strand, within MPMX19_06162 at 347.385 kb on - strand, within MPMX19_06162 at 347.385 kb on - strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.444 kb on + strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.445 kb on - strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.477 kb on + strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162 at 347.478 kb on - strand, within MPMX19_06162
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 344,267 + MPMX19_06159 0.23 +0.2 344,267 + MPMX19_06159 0.23 -1.7 344,268 - MPMX19_06159 0.23 -2.0 344,268 - MPMX19_06159 0.23 -1.7 344,268 - MPMX19_06159 0.23 -1.2 344,268 - MPMX19_06159 0.23 +0.4 344,531 + MPMX19_06159 0.44 +0.0 344,531 + MPMX19_06159 0.44 -0.7 344,531 + MPMX19_06159 0.44 -1.7 344,531 + MPMX19_06159 0.44 -0.6 344,531 + MPMX19_06159 0.44 -0.8 344,532 - MPMX19_06159 0.44 -1.4 344,532 - MPMX19_06159 0.44 +1.3 344,532 - MPMX19_06159 0.44 +2.3 344,532 - MPMX19_06159 0.44 +1.4 344,532 - MPMX19_06159 0.44 -1.7 344,532 - MPMX19_06159 0.44 +0.1 344,532 - MPMX19_06159 0.44 +0.2 344,532 - MPMX19_06159 0.44 +0.8 344,532 - MPMX19_06159 0.44 -1.6 344,532 - MPMX19_06159 0.44 +0.6 344,532 - MPMX19_06159 0.44 +0.7 344,555 + MPMX19_06159 0.46 -1.0 344,555 + MPMX19_06159 0.46 -0.2 344,555 + MPMX19_06159 0.46 +0.4 344,555 + MPMX19_06159 0.46 -2.6 344,556 - MPMX19_06159 0.46 +0.8 344,556 - MPMX19_06159 0.46 +0.8 344,556 - MPMX19_06159 0.46 +0.6 344,556 - MPMX19_06159 0.46 -0.8 345,192 + -1.6 345,192 + -0.5 345,527 + MPMX19_06160 0.22 +1.1 345,527 + MPMX19_06160 0.22 +0.6 345,527 + MPMX19_06160 0.22 +0.0 345,527 + MPMX19_06160 0.22 -0.6 345,621 + MPMX19_06160 0.29 +0.2 345,621 + MPMX19_06160 0.29 +0.0 345,621 + MPMX19_06160 0.29 +0.2 345,621 + MPMX19_06160 0.29 -0.4 345,621 + MPMX19_06160 0.29 +0.1 345,621 + MPMX19_06160 0.29 +1.0 345,621 + MPMX19_06160 0.29 +0.4 345,621 + MPMX19_06160 0.29 +0.2 345,621 + MPMX19_06160 0.29 +1.8 345,621 + MPMX19_06160 0.29 +1.0 345,621 + MPMX19_06160 0.29 +1.0 345,621 + MPMX19_06160 0.29 +0.1 345,622 - MPMX19_06160 0.29 +1.2 345,622 - MPMX19_06160 0.29 +0.7 345,622 - MPMX19_06160 0.29 +0.0 345,622 - MPMX19_06160 0.29 +1.0 345,622 - MPMX19_06160 0.29 -0.3 345,622 - MPMX19_06160 0.29 -0.6 345,622 - MPMX19_06160 0.29 -0.2 345,622 - MPMX19_06160 0.29 +0.6 345,622 - MPMX19_06160 0.29 +1.8 345,622 - MPMX19_06160 0.29 +1.2 345,622 - MPMX19_06160 0.29 +0.4 345,663 + MPMX19_06160 0.33 +0.9 345,663 + MPMX19_06160 0.33 +1.0 345,663 + MPMX19_06160 0.33 -0.6 345,663 + MPMX19_06160 0.33 +1.7 345,664 - MPMX19_06160 0.33 -0.6 345,664 - MPMX19_06160 0.33 +0.4 345,664 - MPMX19_06160 0.33 -0.2 345,664 - MPMX19_06160 0.33 +0.4 345,664 - MPMX19_06160 0.33 +0.1 345,735 + MPMX19_06160 0.38 -0.6 345,735 + MPMX19_06160 0.38 +0.3 345,735 + MPMX19_06160 0.38 -1.2 345,735 + MPMX19_06160 0.38 -1.3 345,736 - MPMX19_06160 0.38 -0.3 345,736 - MPMX19_06160 0.38 -1.4 345,804 + MPMX19_06160 0.44 +1.0 345,960 + MPMX19_06160 0.56 -1.0 345,960 + MPMX19_06160 0.56 -0.6 345,960 + MPMX19_06160 0.56 +1.8 345,960 + MPMX19_06160 0.56 -0.8 345,960 + MPMX19_06160 0.56 +0.5 345,960 + MPMX19_06160 0.56 +0.2 345,960 + MPMX19_06160 0.56 +0.8 345,960 + MPMX19_06160 0.56 +1.3 345,961 - MPMX19_06160 0.56 +0.4 345,961 - MPMX19_06160 0.56 -1.0 345,961 - MPMX19_06160 0.56 +0.7 345,961 - MPMX19_06160 0.56 -1.7 346,320 + MPMX19_06160 0.85 -0.3 346,320 + MPMX19_06160 0.85 +0.8 346,320 + MPMX19_06160 0.85 +0.0 346,321 - MPMX19_06160 0.85 -0.4 346,321 - MPMX19_06160 0.85 -0.4 346,338 + MPMX19_06160 0.86 -0.6 346,339 - MPMX19_06160 0.86 +0.2 346,368 + MPMX19_06160 0.89 +0.7 346,369 - MPMX19_06160 0.89 +0.8 346,369 - MPMX19_06160 0.89 +0.0 346,369 - MPMX19_06160 0.89 +0.4 346,506 + -0.2 346,506 + +0.1 346,506 + -1.2 346,523 + +0.6 346,523 + -0.8 346,523 + +0.8 346,524 - -0.8 346,528 + -1.5 346,528 + -0.1 346,541 + -1.5 346,541 + +0.0 346,541 + -0.1 346,541 + -1.1 346,541 + +0.4 346,541 + -0.8 346,541 + +0.1 346,541 + -0.0 346,541 + -1.0 346,541 + -0.2 346,541 + -1.4 346,542 - +0.4 346,542 - +1.7 346,542 - +0.3 346,542 - -1.3 346,542 - +0.5 346,542 - -1.2 346,542 - -0.2 346,542 - -0.2 346,542 - +0.4 346,597 + -0.3 346,597 + +0.0 346,597 + -0.4 346,597 + +0.2 346,597 + +0.0 346,597 + -0.7 346,597 + -2.4 346,597 + -1.0 346,597 + +0.1 346,597 + -0.5 346,597 + -0.5 346,597 + +0.4 346,597 + +0.3 346,597 + -0.3 346,597 + +0.4 346,598 - -0.6 346,598 - -0.3 346,598 - -0.2 346,598 - +0.1 346,598 - -0.9 346,598 - +0.3 346,654 + MPMX19_06161 0.15 -0.6 346,654 + MPMX19_06161 0.15 +0.9 346,654 + MPMX19_06161 0.15 -0.2 346,654 + MPMX19_06161 0.15 +0.3 346,654 + MPMX19_06161 0.15 -0.4 346,654 + MPMX19_06161 0.15 +0.2 346,654 + MPMX19_06161 0.15 -1.9 346,654 + MPMX19_06161 0.15 -0.2 346,654 + MPMX19_06161 0.15 -0.2 346,654 + MPMX19_06161 0.15 -0.2 346,654 + MPMX19_06161 0.15 +0.4 346,654 + MPMX19_06161 0.15 +2.0 346,654 + MPMX19_06161 0.15 -1.5 346,654 + MPMX19_06161 0.15 +0.0 346,655 - MPMX19_06161 0.15 -1.0 346,655 - MPMX19_06161 0.15 +1.3 346,655 - MPMX19_06161 0.15 -0.5 346,655 - MPMX19_06161 0.15 -0.2 346,655 - MPMX19_06161 0.15 -1.1 346,655 - MPMX19_06161 0.15 -0.1 346,655 - MPMX19_06161 0.15 +0.8 346,655 - MPMX19_06161 0.15 -1.5 346,655 - MPMX19_06161 0.15 -2.2 346,655 - MPMX19_06161 0.15 +1.3 346,655 - MPMX19_06161 0.15 -0.3 346,655 - MPMX19_06161 0.15 -1.2 347,021 - MPMX19_06161 0.84 +0.4 347,056 + -1.0 347,056 + -2.2 347,057 - +1.4 347,057 - -0.2 347,057 - +1.3 347,168 + -1.3 347,168 + -0.9 347,168 + -0.7 347,168 + +0.0 347,168 + -0.2 347,169 - -1.1 347,169 - +0.4 347,169 - +1.0 347,169 - -0.6 347,202 - -1.2 347,239 + -0.8 347,239 + -1.4 347,239 + -0.7 347,239 + -0.1 347,239 + +0.1 347,239 + -1.0 347,239 + -0.9 347,239 + +0.0 347,239 + -0.6 347,239 + -1.4 347,239 + +0.5 347,240 - +0.0 347,240 - +0.1 347,240 - +0.5 347,240 - -0.3 347,240 - +0.7 347,240 - -1.6 347,384 + MPMX19_06162 0.10 -1.3 347,384 + MPMX19_06162 0.10 -0.6 347,385 - MPMX19_06162 0.10 +0.9 347,385 - MPMX19_06162 0.10 -1.0 347,385 - MPMX19_06162 0.10 -1.2 347,444 + MPMX19_06162 0.14 +1.1 347,444 + MPMX19_06162 0.14 +0.8 347,444 + MPMX19_06162 0.14 -1.4 347,444 + MPMX19_06162 0.14 -2.0 347,444 + MPMX19_06162 0.14 +0.3 347,444 + MPMX19_06162 0.14 -0.5 347,444 + MPMX19_06162 0.14 +1.2 347,444 + MPMX19_06162 0.14 -1.4 347,445 - MPMX19_06162 0.14 +0.1 347,445 - MPMX19_06162 0.14 -0.9 347,445 - MPMX19_06162 0.14 -1.0 347,445 - MPMX19_06162 0.14 +0.0 347,445 - MPMX19_06162 0.14 -0.2 347,445 - MPMX19_06162 0.14 -0.7 347,445 - MPMX19_06162 0.14 -0.1 347,477 + MPMX19_06162 0.15 +0.7 347,477 + MPMX19_06162 0.15 -1.1 347,477 + MPMX19_06162 0.15 +0.3 347,477 + MPMX19_06162 0.15 -0.1 347,477 + MPMX19_06162 0.15 -1.3 347,477 + MPMX19_06162 0.15 -0.8 347,478 - MPMX19_06162 0.15 -0.6 347,478 - MPMX19_06162 0.15 -1.4 347,478 - MPMX19_06162 0.15 -0.9 347,478 - MPMX19_06162 0.15 -0.8 347,478 - MPMX19_06162 0.15 -0.1 347,478 - MPMX19_06162 0.15 +0.4
Or see this region's nucleotide sequence