Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06118

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06117 and MPMX19_06118 are separated by 147 nucleotidesMPMX19_06118 and MPMX19_06119 are separated by 2 nucleotidesMPMX19_06119 and MPMX19_06120 are separated by 81 nucleotides MPMX19_06117: MPMX19_06117 - hypothetical protein, at 302,821 to 304,089 _06117 MPMX19_06118: MPMX19_06118 - Adenine phosphoribosyltransferase, at 304,237 to 304,752 _06118 MPMX19_06119: MPMX19_06119 - Inner membrane protein YphA, at 304,755 to 305,204 _06119 MPMX19_06120: MPMX19_06120 - hypothetical protein, at 305,286 to 306,242 _06120 Position (kb) 304 305Strain fitness (log2 ratio) -2 -1 0 1 2at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.350 kb on + strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.351 kb on - strand, within MPMX19_06117at 303.767 kb on + strand, within MPMX19_06117at 303.767 kb on + strand, within MPMX19_06117at 303.767 kb on + strand, within MPMX19_06117at 303.767 kb on + strand, within MPMX19_06117at 303.768 kb on - strand, within MPMX19_06117at 303.768 kb on - strand, within MPMX19_06117at 304.033 kb on + strandat 304.034 kb on - strandat 304.171 kb on + strandat 304.171 kb on + strandat 304.171 kb on + strandat 304.172 kb on - strandat 304.172 kb on - strandat 304.172 kb on - strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.200 kb on + strandat 304.201 kb on - strandat 304.201 kb on - strandat 304.201 kb on - strandat 304.220 kb on + strandat 304.220 kb on + strandat 304.220 kb on + strandat 304.255 kb on - strandat 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.298 kb on - strand, within MPMX19_06118at 304.298 kb on - strand, within MPMX19_06118at 304.298 kb on - strand, within MPMX19_06118at 304.298 kb on - strand, within MPMX19_06118at 304.298 kb on - strand, within MPMX19_06118at 304.510 kb on + strand, within MPMX19_06118at 304.510 kb on + strand, within MPMX19_06118at 304.510 kb on + strand, within MPMX19_06118at 304.510 kb on + strand, within MPMX19_06118at 304.511 kb on - strand, within MPMX19_06118at 304.511 kb on - strand, within MPMX19_06118at 304.522 kb on + strand, within MPMX19_06118at 304.741 kb on + strandat 304.741 kb on + strandat 304.742 kb on - strandat 304.742 kb on - strandat 304.742 kb on - strandat 304.742 kb on - strandat 304.742 kb on - strandat 304.894 kb on + strand, within MPMX19_06119at 304.894 kb on + strand, within MPMX19_06119at 304.895 kb on - strand, within MPMX19_06119at 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.258 kb on + strandat 305.258 kb on + strandat 305.521 kb on + strand, within MPMX19_06120at 305.521 kb on + strand, within MPMX19_06120at 305.521 kb on + strand, within MPMX19_06120at 305.522 kb on - strand, within MPMX19_06120at 305.522 kb on - strand, within MPMX19_06120at 305.608 kb on + strand, within MPMX19_06120at 305.608 kb on + strand, within MPMX19_06120at 305.609 kb on - strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.674 kb on + strand, within MPMX19_06120at 305.674 kb on + strand, within MPMX19_06120at 305.674 kb on + strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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303,350 + MPMX19_06117 0.42 -0.8
303,350 + MPMX19_06117 0.42 -2.2
303,350 + MPMX19_06117 0.42 +1.1
303,350 + MPMX19_06117 0.42 +0.8
303,350 + MPMX19_06117 0.42 +0.6
303,350 + MPMX19_06117 0.42 -2.2
303,350 + MPMX19_06117 0.42 -0.3
303,350 + MPMX19_06117 0.42 -0.2
303,350 + MPMX19_06117 0.42 -0.2
303,350 + MPMX19_06117 0.42 -0.4
303,350 + MPMX19_06117 0.42 +0.0
303,350 + MPMX19_06117 0.42 +0.2
303,350 + MPMX19_06117 0.42 -0.7
303,350 + MPMX19_06117 0.42 -1.1
303,350 + MPMX19_06117 0.42 -1.6
303,350 + MPMX19_06117 0.42 -0.7
303,350 + MPMX19_06117 0.42 +0.0
303,350 + MPMX19_06117 0.42 -0.9
303,350 + MPMX19_06117 0.42 +1.1
303,350 + MPMX19_06117 0.42 -1.8
303,351 - MPMX19_06117 0.42 +0.2
303,351 - MPMX19_06117 0.42 +0.5
303,351 - MPMX19_06117 0.42 -0.5
303,351 - MPMX19_06117 0.42 -2.0
303,351 - MPMX19_06117 0.42 -0.6
303,351 - MPMX19_06117 0.42 +1.0
303,351 - MPMX19_06117 0.42 -1.1
303,351 - MPMX19_06117 0.42 -0.4
303,351 - MPMX19_06117 0.42 +0.0
303,351 - MPMX19_06117 0.42 -1.0
303,351 - MPMX19_06117 0.42 +0.5
303,351 - MPMX19_06117 0.42 -1.1
303,351 - MPMX19_06117 0.42 -1.1
303,351 - MPMX19_06117 0.42 -1.3
303,351 - MPMX19_06117 0.42 -0.9
303,351 - MPMX19_06117 0.42 -0.2
303,351 - MPMX19_06117 0.42 -0.6
303,351 - MPMX19_06117 0.42 -0.4
303,351 - MPMX19_06117 0.42 +0.4
303,351 - MPMX19_06117 0.42 +0.5
303,351 - MPMX19_06117 0.42 -0.2
303,351 - MPMX19_06117 0.42 -0.1
303,767 + MPMX19_06117 0.75 +0.1
303,767 + MPMX19_06117 0.75 -0.9
303,767 + MPMX19_06117 0.75 +2.3
303,767 + MPMX19_06117 0.75 -1.3
303,768 - MPMX19_06117 0.75 +1.0
303,768 - MPMX19_06117 0.75 -0.8
304,033 + -1.6
304,034 - +0.4
304,171 + -0.3
304,171 + +1.3
304,171 + -0.4
304,172 - -0.9
304,172 - -1.3
304,172 - -0.3
304,200 + -1.6
304,200 + -0.1
304,200 + -0.5
304,200 + -2.2
304,200 + -1.2
304,200 + -0.4
304,200 + +1.0
304,200 + -0.4
304,200 + +1.0
304,200 + +0.6
304,200 + -0.3
304,200 + +0.8
304,201 - -0.1
304,201 - +0.6
304,201 - -1.0
304,220 + -0.6
304,220 + -1.1
304,220 + -0.5
304,255 - +0.0
304,297 + MPMX19_06118 0.12 -1.8
304,297 + MPMX19_06118 0.12 +0.1
304,297 + MPMX19_06118 0.12 -0.8
304,297 + MPMX19_06118 0.12 +0.0
304,297 + MPMX19_06118 0.12 -1.1
304,297 + MPMX19_06118 0.12 -1.6
304,297 + MPMX19_06118 0.12 -1.2
304,297 + MPMX19_06118 0.12 -0.3
304,297 + MPMX19_06118 0.12 -0.6
304,297 + MPMX19_06118 0.12 +0.4
304,298 - MPMX19_06118 0.12 +0.5
304,298 - MPMX19_06118 0.12 -1.2
304,298 - MPMX19_06118 0.12 -0.3
304,298 - MPMX19_06118 0.12 -0.6
304,298 - MPMX19_06118 0.12 +0.6
304,510 + MPMX19_06118 0.53 -2.1
304,510 + MPMX19_06118 0.53 +0.2
304,510 + MPMX19_06118 0.53 -0.5
304,510 + MPMX19_06118 0.53 -0.7
304,511 - MPMX19_06118 0.53 -0.4
304,511 - MPMX19_06118 0.53 -0.7
304,522 + MPMX19_06118 0.55 -1.3
304,741 + -1.7
304,741 + +2.0
304,742 - -0.9
304,742 - -0.2
304,742 - +1.3
304,742 - -1.4
304,742 - -0.9
304,894 + MPMX19_06119 0.31 -0.3
304,894 + MPMX19_06119 0.31 -0.6
304,895 - MPMX19_06119 0.31 +1.3
305,194 + -0.9
305,194 + +0.4
305,194 + +0.4
305,194 + +1.8
305,194 + -1.3
305,194 + -0.7
305,194 + -0.7
305,194 + +0.2
305,194 + -0.3
305,194 + -1.3
305,194 + -0.4
305,194 + -0.3
305,194 + -0.7
305,194 + +0.2
305,194 + +0.6
305,194 + +0.8
305,194 + -1.4
305,194 + +1.3
305,194 + +2.0
305,194 + -2.4
305,194 + +1.0
305,194 + +0.9
305,194 + +2.0
305,195 - -0.9
305,195 - +0.9
305,195 - -0.2
305,195 - +0.3
305,195 - +0.4
305,195 - +0.2
305,195 - -1.3
305,195 - +0.7
305,195 - -0.3
305,195 - +0.4
305,195 - +0.5
305,195 - -0.2
305,195 - -1.0
305,258 + +1.0
305,258 + +1.0
305,521 + MPMX19_06120 0.25 -0.5
305,521 + MPMX19_06120 0.25 +0.2
305,521 + MPMX19_06120 0.25 -1.8
305,522 - MPMX19_06120 0.25 +0.3
305,522 - MPMX19_06120 0.25 -2.6
305,608 + MPMX19_06120 0.34 -1.4
305,608 + MPMX19_06120 0.34 +0.7
305,609 - MPMX19_06120 0.34 +0.4
305,665 + MPMX19_06120 0.40 +0.6
305,665 + MPMX19_06120 0.40 +0.9
305,665 + MPMX19_06120 0.40 +0.8
305,665 + MPMX19_06120 0.40 +0.2
305,665 + MPMX19_06120 0.40 +0.7
305,665 + MPMX19_06120 0.40 -0.2
305,666 - MPMX19_06120 0.40 +0.6
305,666 - MPMX19_06120 0.40 -0.0
305,666 - MPMX19_06120 0.40 -0.4
305,666 - MPMX19_06120 0.40 -1.0
305,674 + MPMX19_06120 0.41 +0.6
305,674 + MPMX19_06120 0.41 -0.8
305,674 + MPMX19_06120 0.41 -1.0
305,675 - MPMX19_06120 0.41 -2.1
305,675 - MPMX19_06120 0.41 -0.3
305,675 - MPMX19_06120 0.41 +0.7
305,675 - MPMX19_06120 0.41 -1.3
305,675 - MPMX19_06120 0.41 -0.3
305,675 - MPMX19_06120 0.41 -0.3

Or see this region's nucleotide sequence