Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06017 and MPMX19_06018 are separated by 28 nucleotides MPMX19_06018 and MPMX19_06019 are separated by 241 nucleotides MPMX19_06019 and MPMX19_06020 are separated by 281 nucleotides
MPMX19_06017: MPMX19_06017 - hypothetical protein, at 170,452 to 171,081
_06017
MPMX19_06018: MPMX19_06018 - hypothetical protein, at 171,110 to 171,673
_06018
MPMX19_06019: MPMX19_06019 - Peptide methionine sulfoxide reductase MsrB, at 171,915 to 172,331
_06019
MPMX19_06020: MPMX19_06020 - hypothetical protein, at 172,613 to 173,806
_06020
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.918 kb on + strand, within MPMX19_06017 at 170.918 kb on + strand, within MPMX19_06017 at 170.918 kb on + strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 171.018 kb on - strand, within MPMX19_06017 at 171.018 kb on - strand, within MPMX19_06017 at 171.062 kb on + strand at 171.062 kb on + strand at 171.062 kb on + strand at 171.062 kb on + strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.261 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.342 kb on + strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.343 kb on - strand, within MPMX19_06018 at 171.540 kb on + strand, within MPMX19_06018 at 171.540 kb on + strand, within MPMX19_06018 at 171.540 kb on + strand, within MPMX19_06018 at 171.541 kb on - strand, within MPMX19_06018 at 171.785 kb on + strand at 171.785 kb on + strand at 171.785 kb on + strand at 171.785 kb on + strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.786 kb on - strand at 171.828 kb on - strand at 171.858 kb on + strand at 171.859 kb on - strand at 171.859 kb on - strand at 171.859 kb on - strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.903 kb on + strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.904 kb on - strand at 171.967 kb on + strand, within MPMX19_06019 at 171.967 kb on + strand, within MPMX19_06019 at 171.967 kb on + strand, within MPMX19_06019 at 171.967 kb on + strand, within MPMX19_06019 at 171.968 kb on - strand, within MPMX19_06019 at 171.968 kb on - strand, within MPMX19_06019 at 171.968 kb on - strand, within MPMX19_06019 at 172.054 kb on + strand, within MPMX19_06019 at 172.054 kb on + strand, within MPMX19_06019 at 172.055 kb on - strand, within MPMX19_06019 at 172.066 kb on + strand, within MPMX19_06019 at 172.066 kb on + strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.067 kb on - strand, within MPMX19_06019 at 172.135 kb on + strand, within MPMX19_06019 at 172.135 kb on + strand, within MPMX19_06019 at 172.135 kb on + strand, within MPMX19_06019 at 172.136 kb on - strand, within MPMX19_06019 at 172.136 kb on - strand, within MPMX19_06019 at 172.136 kb on - strand, within MPMX19_06019 at 172.136 kb on - strand, within MPMX19_06019 at 172.136 kb on - strand, within MPMX19_06019 at 172.153 kb on + strand, within MPMX19_06019 at 172.153 kb on + strand, within MPMX19_06019 at 172.153 kb on + strand, within MPMX19_06019 at 172.153 kb on + strand, within MPMX19_06019 at 172.154 kb on - strand, within MPMX19_06019 at 172.154 kb on - strand, within MPMX19_06019 at 172.154 kb on - strand, within MPMX19_06019 at 172.154 kb on - strand, within MPMX19_06019 at 172.184 kb on - strand, within MPMX19_06019 at 172.229 kb on - strand, within MPMX19_06019 at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.374 kb on + strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.375 kb on - strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.376 kb on + strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.377 kb on - strand at 172.397 kb on - strand at 172.448 kb on + strand at 172.449 kb on - strand at 172.473 kb on + strand at 172.473 kb on + strand at 172.473 kb on + strand at 172.474 kb on - strand at 172.628 kb on + strand at 172.629 kb on - strand at 172.629 kb on - strand at 172.721 kb on + strand at 172.721 kb on + strand at 172.722 kb on - strand at 172.835 kb on + strand, within MPMX19_06020 at 172.835 kb on + strand, within MPMX19_06020 at 172.835 kb on + strand, within MPMX19_06020 at 172.835 kb on + strand, within MPMX19_06020 at 172.835 kb on + strand, within MPMX19_06020 at 172.835 kb on + strand, within MPMX19_06020 at 172.836 kb on - strand, within MPMX19_06020 at 173.002 kb on + strand, within MPMX19_06020 at 173.002 kb on + strand, within MPMX19_06020 at 173.002 kb on + strand, within MPMX19_06020 at 173.002 kb on + strand, within MPMX19_06020 at 173.003 kb on - strand, within MPMX19_06020 at 173.003 kb on - strand, within MPMX19_06020 at 173.233 kb on + strand, within MPMX19_06020 at 173.233 kb on + strand, within MPMX19_06020
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 170,918 + MPMX19_06017 0.74 -1.1 170,918 + MPMX19_06017 0.74 -0.3 170,918 + MPMX19_06017 0.74 +1.1 170,919 - MPMX19_06017 0.74 -1.4 170,919 - MPMX19_06017 0.74 -2.3 170,919 - MPMX19_06017 0.74 -1.6 171,018 - MPMX19_06017 0.90 -0.6 171,018 - MPMX19_06017 0.90 -0.7 171,062 + +0.7 171,062 + +2.4 171,062 + -0.6 171,062 + -0.3 171,063 - -1.3 171,063 - -1.0 171,063 - -0.4 171,063 - +0.1 171,063 - -0.2 171,063 - -1.0 171,063 - +0.6 171,100 + +1.1 171,100 + -1.1 171,100 + -1.6 171,100 + -1.1 171,100 + -1.0 171,100 + +0.0 171,100 + -0.1 171,100 + +0.1 171,100 + +1.0 171,100 + -1.2 171,100 + +1.7 171,100 + -0.8 171,100 + -0.4 171,100 + -1.4 171,100 + -0.8 171,101 - -0.8 171,101 - -0.8 171,101 - -0.3 171,101 - +0.6 171,101 - -0.0 171,101 - -0.5 171,101 - +0.2 171,101 - -0.9 171,101 - -1.1 171,101 - +0.4 171,261 + MPMX19_06018 0.27 +0.6 171,342 + MPMX19_06018 0.41 -0.7 171,342 + MPMX19_06018 0.41 -0.4 171,342 + MPMX19_06018 0.41 -0.3 171,342 + MPMX19_06018 0.41 +1.0 171,342 + MPMX19_06018 0.41 +0.4 171,342 + MPMX19_06018 0.41 +0.5 171,342 + MPMX19_06018 0.41 -0.7 171,342 + MPMX19_06018 0.41 -1.7 171,342 + MPMX19_06018 0.41 +0.4 171,342 + MPMX19_06018 0.41 +0.6 171,342 + MPMX19_06018 0.41 -0.9 171,342 + MPMX19_06018 0.41 -1.0 171,343 - MPMX19_06018 0.41 -0.7 171,343 - MPMX19_06018 0.41 +0.6 171,343 - MPMX19_06018 0.41 +0.4 171,343 - MPMX19_06018 0.41 -0.3 171,343 - MPMX19_06018 0.41 -0.2 171,343 - MPMX19_06018 0.41 +0.2 171,343 - MPMX19_06018 0.41 +0.4 171,343 - MPMX19_06018 0.41 -0.7 171,343 - MPMX19_06018 0.41 -0.6 171,343 - MPMX19_06018 0.41 -0.1 171,343 - MPMX19_06018 0.41 +0.2 171,343 - MPMX19_06018 0.41 +1.0 171,343 - MPMX19_06018 0.41 -1.0 171,343 - MPMX19_06018 0.41 +0.6 171,540 + MPMX19_06018 0.76 -1.6 171,540 + MPMX19_06018 0.76 -0.5 171,540 + MPMX19_06018 0.76 -0.8 171,541 - MPMX19_06018 0.76 +0.0 171,785 + -1.1 171,785 + -0.4 171,785 + -1.0 171,785 + +1.0 171,786 - +0.8 171,786 - -1.3 171,786 - -1.9 171,786 - -0.4 171,786 - -1.7 171,786 - -0.8 171,828 - +0.0 171,858 + +0.0 171,859 - +0.3 171,859 - -1.3 171,859 - +0.7 171,903 + -0.5 171,903 + +1.3 171,903 + -0.8 171,903 + +1.0 171,903 + -0.3 171,903 + -0.3 171,903 + -1.1 171,903 + -0.6 171,904 - -0.9 171,904 - +0.9 171,904 - +0.8 171,904 - -0.7 171,904 - -0.2 171,904 - -0.9 171,904 - -1.4 171,904 - +0.2 171,904 - -0.5 171,904 - -0.6 171,967 + MPMX19_06019 0.12 -0.3 171,967 + MPMX19_06019 0.12 +1.2 171,967 + MPMX19_06019 0.12 -0.3 171,967 + MPMX19_06019 0.12 +0.7 171,968 - MPMX19_06019 0.13 +0.6 171,968 - MPMX19_06019 0.13 +2.0 171,968 - MPMX19_06019 0.13 +1.4 172,054 + MPMX19_06019 0.33 -0.9 172,054 + MPMX19_06019 0.33 +0.2 172,055 - MPMX19_06019 0.34 +0.6 172,066 + MPMX19_06019 0.36 -1.3 172,066 + MPMX19_06019 0.36 +0.0 172,067 - MPMX19_06019 0.36 +0.3 172,067 - MPMX19_06019 0.36 -0.7 172,067 - MPMX19_06019 0.36 +0.4 172,067 - MPMX19_06019 0.36 -0.1 172,067 - MPMX19_06019 0.36 -0.6 172,135 + MPMX19_06019 0.53 -1.6 172,135 + MPMX19_06019 0.53 +0.2 172,135 + MPMX19_06019 0.53 +0.3 172,136 - MPMX19_06019 0.53 -0.6 172,136 - MPMX19_06019 0.53 +1.7 172,136 - MPMX19_06019 0.53 -1.6 172,136 - MPMX19_06019 0.53 -1.0 172,136 - MPMX19_06019 0.53 -1.3 172,153 + MPMX19_06019 0.57 +0.4 172,153 + MPMX19_06019 0.57 +0.7 172,153 + MPMX19_06019 0.57 -0.4 172,153 + MPMX19_06019 0.57 +0.7 172,154 - MPMX19_06019 0.57 +0.2 172,154 - MPMX19_06019 0.57 -1.2 172,154 - MPMX19_06019 0.57 -0.6 172,154 - MPMX19_06019 0.57 -0.9 172,184 - MPMX19_06019 0.65 +0.7 172,229 - MPMX19_06019 0.75 -0.4 172,374 + -0.3 172,374 + +0.4 172,374 + -0.1 172,374 + -0.2 172,374 + -0.4 172,374 + -0.1 172,374 + -1.0 172,374 + -0.7 172,374 + -1.0 172,374 + +0.0 172,374 + +1.2 172,374 + -1.1 172,374 + -1.6 172,374 + +0.0 172,374 + +0.5 172,374 + -0.6 172,374 + +0.3 172,374 + +1.0 172,374 + -0.6 172,374 + -1.6 172,374 + +0.3 172,374 + +0.5 172,374 + -0.7 172,374 + +0.1 172,375 - +0.9 172,375 - -0.8 172,375 - -0.4 172,375 - +1.0 172,375 - -1.0 172,375 - +0.3 172,375 - +0.6 172,375 - -1.4 172,375 - -1.4 172,375 - -1.1 172,375 - -0.1 172,375 - -0.1 172,376 + -0.7 172,376 + +0.2 172,376 + -0.1 172,376 + -1.3 172,376 + +1.4 172,376 + -0.4 172,376 + +0.9 172,376 + -0.7 172,377 - -0.4 172,377 - -0.1 172,377 - -0.8 172,377 - -0.1 172,377 - -0.9 172,377 - +0.1 172,377 - -1.0 172,377 - -0.1 172,377 - -0.8 172,377 - -0.8 172,397 - +0.6 172,448 + +0.4 172,449 - +1.1 172,473 + -0.8 172,473 + +0.4 172,473 + +0.2 172,474 - -0.3 172,628 + +1.4 172,629 - +0.4 172,629 - -1.6 172,721 + -0.7 172,721 + -1.3 172,722 - -0.3 172,835 + MPMX19_06020 0.19 -0.3 172,835 + MPMX19_06020 0.19 -1.4 172,835 + MPMX19_06020 0.19 +0.0 172,835 + MPMX19_06020 0.19 -1.3 172,835 + MPMX19_06020 0.19 +2.3 172,835 + MPMX19_06020 0.19 -0.2 172,836 - MPMX19_06020 0.19 -1.8 173,002 + MPMX19_06020 0.33 +0.0 173,002 + MPMX19_06020 0.33 +0.0 173,002 + MPMX19_06020 0.33 -0.1 173,002 + MPMX19_06020 0.33 +0.4 173,003 - MPMX19_06020 0.33 -2.1 173,003 - MPMX19_06020 0.33 -1.1 173,233 + MPMX19_06020 0.52 -0.8 173,233 + MPMX19_06020 0.52 -0.7
Or see this region's nucleotide sequence