Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05963

Experiment: NF

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NF
				remove
110,300	+	MPMX19_05962	0.32	+1.3
110,300	+	MPMX19_05962	0.32	+1.0
110,301	-	MPMX19_05962	0.32	+0.3
110,301	-	MPMX19_05962	0.32	+0.0
110,384	+	MPMX19_05962	0.38	+0.1
110,384	+	MPMX19_05962	0.38	-1.0
110,659	+	MPMX19_05962	0.59	+0.5
110,659	+	MPMX19_05962	0.59	-1.6
110,659	+	MPMX19_05962	0.59	+0.6
110,659	+	MPMX19_05962	0.59	-0.6
110,659	+	MPMX19_05962	0.59	-0.8
110,659	+	MPMX19_05962	0.59	+0.0
110,659	+	MPMX19_05962	0.59	-0.6
110,659	+	MPMX19_05962	0.59	-1.0
110,660	-	MPMX19_05962	0.59	+1.8
110,660	-	MPMX19_05962	0.59	+0.0
110,660	-	MPMX19_05962	0.59	+1.2
110,660	-	MPMX19_05962	0.59	-0.6
110,660	-	MPMX19_05962	0.59	-1.0
110,660	-	MPMX19_05962	0.59	+1.5
110,660	-	MPMX19_05962	0.59	-0.5
110,660	-	MPMX19_05962	0.59	-0.8
110,660	-	MPMX19_05962	0.59	-0.5
110,660	-	MPMX19_05962	0.59	-0.6
110,873	+	MPMX19_05962	0.75	-1.8
110,873	+	MPMX19_05962	0.75	+1.3
110,873	+	MPMX19_05962	0.75	+0.9
110,874	-	MPMX19_05962	0.75	-1.4
110,969	+	MPMX19_05962	0.82	-1.1
111,044	+	MPMX19_05962	0.87	-0.1
111,045	-	MPMX19_05962	0.88	-0.6
111,050	+	MPMX19_05962	0.88	-0.9
111,050	+	MPMX19_05962	0.88	+0.3
111,050	+	MPMX19_05962	0.88	-0.5
111,050	+	MPMX19_05962	0.88	+1.0
111,050	+	MPMX19_05962	0.88	-1.6
111,050	+	MPMX19_05962	0.88	-1.3
111,050	+	MPMX19_05962	0.88	+0.4
111,050	+	MPMX19_05962	0.88	-0.9
111,051	-	MPMX19_05962	0.88	-1.3
111,051	-	MPMX19_05962	0.88	-0.0
111,051	-	MPMX19_05962	0.88	+0.7
111,122	+			+0.4
111,122	+			-1.7
111,122	+			-0.5
111,122	+			+1.6
111,122	+			-1.6
111,122	+			+0.1
111,122	+			-0.7
111,123	-			-1.3
111,123	-			-0.8
111,123	-			+0.0
111,123	-			-2.0
111,125	+			+0.5
111,126	-			+1.4
111,126	-			+0.3
111,217	+			-0.4
111,217	+			-1.1
111,217	+			-1.3
111,573	+	MPMX19_05963	0.19	+2.3
111,573	+	MPMX19_05963	0.19	-0.7
111,573	+	MPMX19_05963	0.19	-0.1
111,573	+	MPMX19_05963	0.19	+0.5
111,573	+	MPMX19_05963	0.19	-0.1
111,573	+	MPMX19_05963	0.19	-0.3
111,573	+	MPMX19_05963	0.19	+0.1
111,573	+	MPMX19_05963	0.19	-1.6
111,573	+	MPMX19_05963	0.19	-0.8
111,574	-	MPMX19_05963	0.19	-0.8
111,574	-	MPMX19_05963	0.19	+0.2
111,574	-	MPMX19_05963	0.19	-1.1
111,574	-	MPMX19_05963	0.19	-1.3
111,730	+	MPMX19_05963	0.27	-1.8
111,730	+	MPMX19_05963	0.27	+0.2
111,730	+	MPMX19_05963	0.27	-1.8
111,730	+	MPMX19_05963	0.27	+0.0
111,730	+	MPMX19_05963	0.27	+0.3
111,730	+	MPMX19_05963	0.27	-1.1
111,731	-	MPMX19_05963	0.27	-0.2
111,731	-	MPMX19_05963	0.27	-2.1
111,763	+	MPMX19_05963	0.29	-0.7
111,763	+	MPMX19_05963	0.29	+0.0
111,763	+	MPMX19_05963	0.29	-0.7
111,763	+	MPMX19_05963	0.29	-0.8
111,763	+	MPMX19_05963	0.29	-0.8
111,764	-	MPMX19_05963	0.29	-0.1
111,764	-	MPMX19_05963	0.29	-0.8
111,764	-	MPMX19_05963	0.29	+0.4
111,764	-	MPMX19_05963	0.29	+0.4
111,764	-	MPMX19_05963	0.29	-0.2
111,764	-	MPMX19_05963	0.29	-0.3
111,764	-	MPMX19_05963	0.29	-0.1
111,764	-	MPMX19_05963	0.29	-2.2
111,764	-	MPMX19_05963	0.29	-0.7
111,775	+	MPMX19_05963	0.30	-0.1
111,775	+	MPMX19_05963	0.30	+0.4
111,776	-	MPMX19_05963	0.30	-0.8
111,776	-	MPMX19_05963	0.30	+0.7
111,856	+	MPMX19_05963	0.34	-1.0
111,856	+	MPMX19_05963	0.34	-0.3
111,856	+	MPMX19_05963	0.34	-2.1
111,856	+	MPMX19_05963	0.34	+0.5
111,856	+	MPMX19_05963	0.34	-1.6
111,857	-	MPMX19_05963	0.34	-0.9
111,857	-	MPMX19_05963	0.34	-0.7
111,857	-	MPMX19_05963	0.34	-0.8
111,857	-	MPMX19_05963	0.34	-1.4
111,857	-	MPMX19_05963	0.34	+1.3
111,857	-	MPMX19_05963	0.34	+2.6
111,857	-	MPMX19_05963	0.34	+0.8
112,129	+	MPMX19_05963	0.48	+0.6
112,129	+	MPMX19_05963	0.48	-0.3
112,129	+	MPMX19_05963	0.48	-0.4
112,130	-	MPMX19_05963	0.48	-0.9
112,130	-	MPMX19_05963	0.48	+0.1
112,130	-	MPMX19_05963	0.48	-0.1
112,378	+	MPMX19_05963	0.61	+0.9
112,379	-	MPMX19_05963	0.62	+0.8
112,379	-	MPMX19_05963	0.62	-0.6
112,379	-	MPMX19_05963	0.62	-0.6
112,483	+	MPMX19_05963	0.67	-0.9
112,483	+	MPMX19_05963	0.67	-2.6
112,483	+	MPMX19_05963	0.67	+1.0
112,484	-	MPMX19_05963	0.67	+0.1
112,484	-	MPMX19_05963	0.67	+0.2
112,484	-	MPMX19_05963	0.67	-2.4
112,648	+	MPMX19_05963	0.76	+0.2
112,648	+	MPMX19_05963	0.76	+0.1
112,757	+	MPMX19_05963	0.82	+0.9
112,757	+	MPMX19_05963	0.82	+2.4
112,757	+	MPMX19_05963	0.82	-0.7
112,757	+	MPMX19_05963	0.82	+0.5
112,757	+	MPMX19_05963	0.82	-0.1
112,757	+	MPMX19_05963	0.82	-0.6
112,757	+	MPMX19_05963	0.82	-0.1
112,757	+	MPMX19_05963	0.82	-0.9
112,757	+	MPMX19_05963	0.82	-1.3
112,758	-	MPMX19_05963	0.82	-1.5
112,758	-	MPMX19_05963	0.82	+1.2
112,758	-	MPMX19_05963	0.82	-0.4
112,760	+	MPMX19_05963	0.82	-1.0
112,760	+	MPMX19_05963	0.82	-0.2
112,760	+	MPMX19_05963	0.82	-0.5
112,760	+	MPMX19_05963	0.82	+0.6
112,760	+	MPMX19_05963	0.82	-0.5
112,760	+	MPMX19_05963	0.82	-1.6
112,760	+	MPMX19_05963	0.82	-0.6
112,760	+	MPMX19_05963	0.82	+0.4
112,760	+	MPMX19_05963	0.82	-1.0
112,760	+	MPMX19_05963	0.82	-1.6
112,760	+	MPMX19_05963	0.82	-0.4
112,760	+	MPMX19_05963	0.82	-0.8
112,760	+	MPMX19_05963	0.82	-0.3
112,760	+	MPMX19_05963	0.82	-0.2
112,760	+	MPMX19_05963	0.82	+0.2
112,760	+	MPMX19_05963	0.82	+1.7
112,760	+	MPMX19_05963	0.82	-1.7
112,761	-	MPMX19_05963	0.82	+0.9
112,761	-	MPMX19_05963	0.82	-1.1
112,761	-	MPMX19_05963	0.82	-3.1
112,761	-	MPMX19_05963	0.82	-1.4
112,761	-	MPMX19_05963	0.82	+0.4
112,761	-	MPMX19_05963	0.82	-2.0
112,780	+	MPMX19_05963	0.83	+0.9
112,780	+	MPMX19_05963	0.83	-1.0
112,780	+	MPMX19_05963	0.83	-0.6
112,780	+	MPMX19_05963	0.83	+0.1
112,780	+	MPMX19_05963	0.83	+0.9
112,780	+	MPMX19_05963	0.83	-0.6
112,780	+	MPMX19_05963	0.83	-1.0
112,780	+	MPMX19_05963	0.83	-1.4
112,780	+	MPMX19_05963	0.83	+0.5
112,780	+	MPMX19_05963	0.83	-0.5
112,780	+	MPMX19_05963	0.83	-1.3
112,780	+	MPMX19_05963	0.83	-2.1
112,780	+	MPMX19_05963	0.83	-0.4
112,780	+	MPMX19_05963	0.83	+0.7
112,780	+	MPMX19_05963	0.83	-0.9
112,780	+	MPMX19_05963	0.83	-0.1
112,781	-	MPMX19_05963	0.83	-0.6
112,781	-	MPMX19_05963	0.83	-1.3
112,781	-	MPMX19_05963	0.83	-1.0
112,781	-	MPMX19_05963	0.83	-1.1
112,781	-	MPMX19_05963	0.83	-1.1
112,781	-	MPMX19_05963	0.83	-1.1
112,781	-	MPMX19_05963	0.83	+0.0
112,781	-	MPMX19_05963	0.83	-0.4
112,954	+			-0.3
112,954	+			-1.1
112,954	+			-0.6
112,954	+			-0.8
112,954	+			-1.1
112,954	+			+0.0
112,954	+			-1.8
112,954	+			+0.0
112,955	-			-0.1
112,955	-			+0.4
112,955	-			-0.1
112,955	-			-0.4
112,955	-			-0.8
112,955	-			+0.7
112,955	-			-1.9
112,955	-			-1.3
112,996	+			+0.3
112,996	+			+0.3
112,996	+			+1.0
112,996	+			+0.0
112,996	+			-1.0
112,997	-			+0.4
112,997	-			+1.3
112,997	-			+0.1
112,997	-			-0.1
112,997	-			+0.8
112,997	-			-0.4
112,997	-			+1.3
113,105	+			-1.0
113,105	+			-1.7
113,105	+			-0.3
113,105	+			+0.6
113,105	+			-0.2
113,105	+			-0.3
113,105	+			+0.6
113,105	+			-0.3
113,106	-			+0.3
113,106	-			+1.1
113,106	-			+0.1
113,106	-			-1.3
113,106	-			+0.7
113,106	-			-0.8
113,106	-			+0.0
113,106	-			+1.0
113,106	-			+0.4
113,106	-			+0.9
113,106	-			+0.0
113,154	+			+0.0
113,154	+			+0.9
113,154	+			-0.3
113,330	+			+0.3
113,330	+			-0.6
113,330	+			+0.5
113,330	+			+0.3
113,330	+			-1.0
113,330	+			+0.7
113,330	+			+0.6
113,330	+			-0.4
113,330	+			-0.7
113,330	+			-1.0
113,330	+			-1.2
113,330	+			-0.1
113,330	+			-0.8
113,330	+			-0.2
113,331	-			+1.2
113,331	-			-1.3
113,331	-			-1.8
113,331	-			-1.3
113,331	-			-1.7
113,331	-			+0.7
113,331	-			+0.4
113,331	-			-1.3
113,331	-			-0.8
113,331	-			-0.5
113,331	-			+1.5
113,331	-			+0.1
113,331	-			+0.1
113,331	-			-1.0
113,331	-			-0.1
113,331	-			-1.0
113,331	-			-0.9
113,331	-			-0.7
113,393	+	MPMX19_05964	0.14	+0.1
113,393	+	MPMX19_05964	0.14	+1.0
113,429	+	MPMX19_05964	0.17	+0.0
113,429	+	MPMX19_05964	0.17	+0.1
113,429	+	MPMX19_05964	0.17	-1.9
113,429	+	MPMX19_05964	0.17	-0.2
113,430	-	MPMX19_05964	0.18	-0.2
113,450	+	MPMX19_05964	0.19	-0.9
113,450	+	MPMX19_05964	0.19	+0.3
113,451	-	MPMX19_05964	0.20	+0.1
113,451	-	MPMX19_05964	0.20	-1.1
113,451	-	MPMX19_05964	0.20	+0.9
113,451	-	MPMX19_05964	0.20	-0.4
113,451	-	MPMX19_05964	0.20	-0.1
113,451	-	MPMX19_05964	0.20	+0.3
113,451	-	MPMX19_05964	0.20	+0.4
113,451	-	MPMX19_05964	0.20	+1.8
113,451	-	MPMX19_05964	0.20	-0.6
113,483	+	MPMX19_05964	0.23	+0.0
113,483	+	MPMX19_05964	0.23	+0.8
113,483	+	MPMX19_05964	0.23	+1.9
113,483	+	MPMX19_05964	0.23	-0.8
113,483	+	MPMX19_05964	0.23	-0.1
113,483	+	MPMX19_05964	0.23	-1.3
113,483	+	MPMX19_05964	0.23	-0.7
113,483	+	MPMX19_05964	0.23	+1.0
113,483	+	MPMX19_05964	0.23	-0.3
113,483	+	MPMX19_05964	0.23	+0.0
113,483	+	MPMX19_05964	0.23	-0.7
113,483	+	MPMX19_05964	0.23	-1.4
113,483	+	MPMX19_05964	0.23	-0.9
113,483	+	MPMX19_05964	0.23	-0.2
113,484	-	MPMX19_05964	0.23	+0.5
113,484	-	MPMX19_05964	0.23	+0.8
113,484	-	MPMX19_05964	0.23	-1.0
113,484	-	MPMX19_05964	0.23	-1.4
113,484	-	MPMX19_05964	0.23	-2.6
113,484	-	MPMX19_05964	0.23	-0.2
113,484	-	MPMX19_05964	0.23	-0.4
113,484	-	MPMX19_05964	0.23	-0.7
113,484	-	MPMX19_05964	0.23	-1.7
113,484	-	MPMX19_05964	0.23	-0.4
113,484	-	MPMX19_05964	0.23	+0.4
113,528	+	MPMX19_05964	0.27	-0.3
113,528	+	MPMX19_05964	0.27	-0.3
113,528	+	MPMX19_05964	0.27	+0.0
113,529	-	MPMX19_05964	0.27	+0.4
113,603	+	MPMX19_05964	0.34	+0.9
113,604	-	MPMX19_05964	0.34	-0.5
113,711	+	MPMX19_05964	0.44	-0.4
113,895	+	MPMX19_05964	0.61	+1.7
113,895	+	MPMX19_05964	0.61	+1.0
113,895	+	MPMX19_05964	0.61	-0.5
113,895	+	MPMX19_05964	0.61	-0.4
113,896	-	MPMX19_05964	0.61	-1.4
113,896	-	MPMX19_05964	0.61	-2.1
113,896	-	MPMX19_05964	0.61	+0.9
113,896	-	MPMX19_05964	0.61	-0.5
113,896	-	MPMX19_05964	0.61	+0.5
113,897	+	MPMX19_05964	0.61	+0.6
113,897	+	MPMX19_05964	0.61	-1.0
113,897	+	MPMX19_05964	0.61	+1.6
113,897	+	MPMX19_05964	0.61	-0.1
113,898	-	MPMX19_05964	0.61	-1.3
113,898	-	MPMX19_05964	0.61	-0.1
113,993	+	MPMX19_05964	0.70	+0.7
113,993	+	MPMX19_05964	0.70	-0.6
113,993	+	MPMX19_05964	0.70	-1.1
113,994	-	MPMX19_05964	0.70	+1.1
113,994	-	MPMX19_05964	0.70	-0.2
113,994	-	MPMX19_05964	0.70	-0.9
113,994	-	MPMX19_05964	0.70	-0.3
114,062	+	MPMX19_05964	0.77	+0.1
114,062	+	MPMX19_05964	0.77	-1.9
114,062	+	MPMX19_05964	0.77	-1.1
114,062	+	MPMX19_05964	0.77	-0.3
114,062	+	MPMX19_05964	0.77	-0.7
114,062	+	MPMX19_05964	0.77	+0.4
114,062	+	MPMX19_05964	0.77	-0.0
114,062	+	MPMX19_05964	0.77	+0.2
114,062	+	MPMX19_05964	0.77	-1.0
114,062	+	MPMX19_05964	0.77	-1.9
114,062	+	MPMX19_05964	0.77	+0.4
114,062	+	MPMX19_05964	0.77	+0.4
114,063	-	MPMX19_05964	0.77	-0.9
114,063	-	MPMX19_05964	0.77	+0.4
114,063	-	MPMX19_05964	0.77	+0.4
114,063	-	MPMX19_05964	0.77	-1.0
114,063	-	MPMX19_05964	0.77	-2.1
114,063	-	MPMX19_05964	0.77	-1.3
114,063	-	MPMX19_05964	0.77	-1.7
114,063	-	MPMX19_05964	0.77	-2.4
114,063	-	MPMX19_05964	0.77	+0.4
114,063	-	MPMX19_05964	0.77	-0.6
114,063	-	MPMX19_05964	0.77	+0.4
114,063	-	MPMX19_05964	0.77	-0.9
114,063	-	MPMX19_05964	0.77	+0.3
114,063	-	MPMX19_05964	0.77	-0.4
114,063	-	MPMX19_05964	0.77	+0.0
114,063	-	MPMX19_05964	0.77	+0.3

Or see this region's nucleotide sequence