Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05931

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05930 and MPMX19_05931 are separated by 238 nucleotidesMPMX19_05931 and MPMX19_05932 are separated by 728 nucleotides MPMX19_05929: MPMX19_05929 - Siroheme synthase, at 67,861 to 68,862 _05929 MPMX19_05930: MPMX19_05930 - Dipeptidyl-peptidase 6, at 68,758 to 69,546 _05930 MPMX19_05931: MPMX19_05931 - Lysine 6-dehydrogenase, at 69,785 to 70,864 _05931 MPMX19_05932: MPMX19_05932 - Bifunctional protein PutA, at 71,593 to 75,351 _05932 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1 2 3at 69.110 kb on + strand, within MPMX19_05930at 69.110 kb on + strand, within MPMX19_05930at 69.110 kb on + strand, within MPMX19_05930at 69.110 kb on + strand, within MPMX19_05930at 69.110 kb on + strand, within MPMX19_05930at 69.111 kb on - strand, within MPMX19_05930at 69.111 kb on - strand, within MPMX19_05930at 69.111 kb on - strand, within MPMX19_05930at 69.111 kb on - strand, within MPMX19_05930at 69.199 kb on + strand, within MPMX19_05930at 69.199 kb on + strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.200 kb on - strand, within MPMX19_05930at 69.584 kb on + strandat 69.584 kb on + strandat 69.585 kb on - strandat 69.613 kb on + strandat 69.905 kb on + strand, within MPMX19_05931at 69.999 kb on + strand, within MPMX19_05931at 69.999 kb on + strand, within MPMX19_05931at 69.999 kb on + strand, within MPMX19_05931at 69.999 kb on + strand, within MPMX19_05931at 69.999 kb on + strand, within MPMX19_05931at 70.000 kb on - strand, within MPMX19_05931at 70.000 kb on - strand, within MPMX19_05931at 70.000 kb on - strand, within MPMX19_05931at 70.000 kb on - strand, within MPMX19_05931at 70.000 kb on - strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.064 kb on + strand, within MPMX19_05931at 70.065 kb on - strand, within MPMX19_05931at 70.065 kb on - strand, within MPMX19_05931at 70.250 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.271 kb on + strand, within MPMX19_05931at 70.272 kb on - strand, within MPMX19_05931at 70.272 kb on - strand, within MPMX19_05931at 70.272 kb on - strand, within MPMX19_05931at 70.272 kb on - strand, within MPMX19_05931at 70.272 kb on - strand, within MPMX19_05931at 70.310 kb on + strand, within MPMX19_05931at 70.310 kb on + strand, within MPMX19_05931at 70.310 kb on + strand, within MPMX19_05931at 70.310 kb on + strand, within MPMX19_05931at 70.311 kb on - strand, within MPMX19_05931at 70.311 kb on - strand, within MPMX19_05931at 70.311 kb on - strand, within MPMX19_05931at 70.403 kb on + strand, within MPMX19_05931at 70.403 kb on + strand, within MPMX19_05931at 70.403 kb on + strand, within MPMX19_05931at 70.403 kb on + strand, within MPMX19_05931at 70.403 kb on + strand, within MPMX19_05931at 70.404 kb on - strand, within MPMX19_05931at 70.404 kb on - strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.478 kb on + strand, within MPMX19_05931at 70.479 kb on - strand, within MPMX19_05931at 70.479 kb on - strand, within MPMX19_05931at 70.479 kb on - strand, within MPMX19_05931at 70.682 kb on + strand, within MPMX19_05931at 70.682 kb on + strand, within MPMX19_05931at 70.682 kb on + strand, within MPMX19_05931at 70.682 kb on + strand, within MPMX19_05931at 70.682 kb on + strand, within MPMX19_05931at 70.682 kb on + strand, within MPMX19_05931at 70.683 kb on - strand, within MPMX19_05931at 70.683 kb on - strand, within MPMX19_05931at 70.683 kb on - strand, within MPMX19_05931at 70.683 kb on - strand, within MPMX19_05931at 70.683 kb on - strand, within MPMX19_05931at 70.683 kb on - strand, within MPMX19_05931at 70.853 kb on + strandat 70.853 kb on + strandat 70.853 kb on + strandat 70.854 kb on - strandat 70.854 kb on - strandat 70.854 kb on - strandat 70.854 kb on - strandat 70.854 kb on - strandat 70.854 kb on - strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.005 kb on + strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.006 kb on - strandat 71.261 kb on + strandat 71.262 kb on - strandat 71.262 kb on - strandat 71.426 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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69,110 + MPMX19_05930 0.45 -0.3
69,110 + MPMX19_05930 0.45 -0.3
69,110 + MPMX19_05930 0.45 +2.3
69,110 + MPMX19_05930 0.45 +2.0
69,110 + MPMX19_05930 0.45 +2.0
69,111 - MPMX19_05930 0.45 +0.2
69,111 - MPMX19_05930 0.45 +0.6
69,111 - MPMX19_05930 0.45 +1.0
69,111 - MPMX19_05930 0.45 -0.8
69,199 + MPMX19_05930 0.56 +1.0
69,199 + MPMX19_05930 0.56 +0.4
69,200 - MPMX19_05930 0.56 +0.0
69,200 - MPMX19_05930 0.56 +0.0
69,200 - MPMX19_05930 0.56 -0.8
69,200 - MPMX19_05930 0.56 -0.1
69,200 - MPMX19_05930 0.56 +0.0
69,200 - MPMX19_05930 0.56 -0.6
69,200 - MPMX19_05930 0.56 -0.7
69,584 + +1.7
69,584 + -0.8
69,585 - -1.5
69,613 + +0.2
69,905 + MPMX19_05931 0.11 +0.7
69,999 + MPMX19_05931 0.20 -0.2
69,999 + MPMX19_05931 0.20 +1.2
69,999 + MPMX19_05931 0.20 +1.4
69,999 + MPMX19_05931 0.20 -2.3
69,999 + MPMX19_05931 0.20 -1.9
70,000 - MPMX19_05931 0.20 +3.0
70,000 - MPMX19_05931 0.20 +1.0
70,000 - MPMX19_05931 0.20 +0.4
70,000 - MPMX19_05931 0.20 +3.0
70,000 - MPMX19_05931 0.20 -0.1
70,064 + MPMX19_05931 0.26 -1.8
70,064 + MPMX19_05931 0.26 +0.1
70,064 + MPMX19_05931 0.26 +1.0
70,064 + MPMX19_05931 0.26 +2.4
70,064 + MPMX19_05931 0.26 -1.4
70,064 + MPMX19_05931 0.26 +3.6
70,065 - MPMX19_05931 0.26 +0.7
70,065 - MPMX19_05931 0.26 -1.4
70,250 + MPMX19_05931 0.43 -2.1
70,271 + MPMX19_05931 0.45 -0.8
70,271 + MPMX19_05931 0.45 +1.0
70,271 + MPMX19_05931 0.45 -0.6
70,271 + MPMX19_05931 0.45 +1.0
70,271 + MPMX19_05931 0.45 +1.0
70,271 + MPMX19_05931 0.45 +1.0
70,271 + MPMX19_05931 0.45 +0.0
70,271 + MPMX19_05931 0.45 -0.8
70,271 + MPMX19_05931 0.45 -0.9
70,272 - MPMX19_05931 0.45 +0.4
70,272 - MPMX19_05931 0.45 +2.0
70,272 - MPMX19_05931 0.45 +0.7
70,272 - MPMX19_05931 0.45 +1.0
70,272 - MPMX19_05931 0.45 +0.2
70,310 + MPMX19_05931 0.49 -1.4
70,310 + MPMX19_05931 0.49 -0.7
70,310 + MPMX19_05931 0.49 +0.1
70,310 + MPMX19_05931 0.49 -0.3
70,311 - MPMX19_05931 0.49 -0.7
70,311 - MPMX19_05931 0.49 -0.6
70,311 - MPMX19_05931 0.49 -0.6
70,403 + MPMX19_05931 0.57 -0.4
70,403 + MPMX19_05931 0.57 +0.4
70,403 + MPMX19_05931 0.57 -0.6
70,403 + MPMX19_05931 0.57 -0.8
70,403 + MPMX19_05931 0.57 +0.0
70,404 - MPMX19_05931 0.57 -0.3
70,404 - MPMX19_05931 0.57 +0.2
70,478 + MPMX19_05931 0.64 -1.4
70,478 + MPMX19_05931 0.64 -1.6
70,478 + MPMX19_05931 0.64 -0.6
70,478 + MPMX19_05931 0.64 -1.1
70,478 + MPMX19_05931 0.64 -2.5
70,478 + MPMX19_05931 0.64 -0.4
70,479 - MPMX19_05931 0.64 -0.6
70,479 - MPMX19_05931 0.64 -0.9
70,479 - MPMX19_05931 0.64 +1.0
70,682 + MPMX19_05931 0.83 +0.2
70,682 + MPMX19_05931 0.83 -0.3
70,682 + MPMX19_05931 0.83 -1.6
70,682 + MPMX19_05931 0.83 +1.0
70,682 + MPMX19_05931 0.83 +1.0
70,682 + MPMX19_05931 0.83 +0.2
70,683 - MPMX19_05931 0.83 +0.7
70,683 - MPMX19_05931 0.83 +1.0
70,683 - MPMX19_05931 0.83 -1.3
70,683 - MPMX19_05931 0.83 -1.0
70,683 - MPMX19_05931 0.83 -0.6
70,683 - MPMX19_05931 0.83 -0.8
70,853 + -0.6
70,853 + -2.1
70,853 + -1.1
70,854 - -1.1
70,854 - +0.0
70,854 - +1.4
70,854 - +0.8
70,854 - -0.6
70,854 - +0.4
71,005 + -1.0
71,005 + +0.4
71,005 + -1.1
71,005 + +0.0
71,005 + -0.4
71,005 + +0.0
71,005 + +0.7
71,005 + +0.6
71,005 + -0.8
71,005 + -0.4
71,005 + -1.7
71,005 + -0.3
71,005 + +0.0
71,005 + -1.1
71,005 + +2.0
71,005 + -1.0
71,005 + -1.1
71,005 + -0.8
71,005 + -1.4
71,005 + -0.8
71,005 + +0.4
71,005 + +0.4
71,006 - -0.1
71,006 - -1.8
71,006 - -1.6
71,006 - -0.2
71,006 - +1.0
71,006 - +0.0
71,006 - -0.1
71,006 - +0.0
71,006 - -0.8
71,006 - -2.3
71,006 - -0.3
71,006 - -0.3
71,006 - -2.3
71,006 - +1.3
71,006 - -0.9
71,006 - +0.6
71,006 - -0.6
71,261 + +0.0
71,262 - -1.4
71,262 - +0.4
71,426 - -1.4

Or see this region's nucleotide sequence