Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05922

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05920 and MPMX19_05921 are separated by 45 nucleotidesMPMX19_05921 and MPMX19_05922 are separated by 28 nucleotidesMPMX19_05922 and MPMX19_05923 are separated by 101 nucleotides MPMX19_05920: MPMX19_05920 - Flagellar motor switch protein FliG, at 54,474 to 55,502 _05920 MPMX19_05921: MPMX19_05921 - hypothetical protein, at 55,548 to 56,270 _05921 MPMX19_05922: MPMX19_05922 - putative oxidoreductase/MSMEI_2347, at 56,299 to 57,135 _05922 MPMX19_05923: MPMX19_05923 - Vitamin B12 import ATP-binding protein BtuD, at 57,237 to 58,901 _05923 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.373 kb on + strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.374 kb on - strand, within MPMX19_05920at 55.497 kb on + strandat 55.497 kb on + strandat 55.497 kb on + strandat 55.498 kb on - strandat 55.498 kb on - strandat 55.498 kb on - strandat 56.162 kb on + strand, within MPMX19_05921at 56.162 kb on + strand, within MPMX19_05921at 56.162 kb on + strand, within MPMX19_05921at 56.163 kb on - strand, within MPMX19_05921at 56.163 kb on - strand, within MPMX19_05921at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.564 kb on + strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.565 kb on - strand, within MPMX19_05922at 56.612 kb on + strand, within MPMX19_05922at 56.613 kb on - strand, within MPMX19_05922at 56.613 kb on - strand, within MPMX19_05922at 56.613 kb on - strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.639 kb on + strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.640 kb on - strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.813 kb on + strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.814 kb on - strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.978 kb on + strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 56.979 kb on - strand, within MPMX19_05922at 57.238 kb on + strandat 57.238 kb on + strandat 57.238 kb on + strandat 57.238 kb on + strandat 57.239 kb on - strandat 57.239 kb on - strandat 57.307 kb on + strandat 57.307 kb on + strandat 57.307 kb on + strandat 57.307 kb on + strandat 57.307 kb on + strandat 57.307 kb on + strandat 57.307 kb on + strandat 57.307 kb on + strandat 57.308 kb on - strandat 57.308 kb on - strandat 57.308 kb on - strandat 57.308 kb on - strandat 57.308 kb on - strandat 57.308 kb on - strandat 57.308 kb on - strandat 57.308 kb on - strandat 57.310 kb on + strandat 57.310 kb on + strandat 57.476 kb on + strand, within MPMX19_05923at 57.477 kb on - strand, within MPMX19_05923at 57.638 kb on + strand, within MPMX19_05923at 57.638 kb on + strand, within MPMX19_05923at 57.638 kb on + strand, within MPMX19_05923at 57.638 kb on + strand, within MPMX19_05923at 57.638 kb on + strand, within MPMX19_05923at 57.638 kb on + strand, within MPMX19_05923at 57.638 kb on + strand, within MPMX19_05923at 57.638 kb on + strand, within MPMX19_05923at 57.639 kb on - strand, within MPMX19_05923at 57.639 kb on - strand, within MPMX19_05923at 57.639 kb on - strand, within MPMX19_05923at 57.639 kb on - strand, within MPMX19_05923at 57.639 kb on - strand, within MPMX19_05923at 57.639 kb on - strand, within MPMX19_05923at 57.673 kb on + strand, within MPMX19_05923at 57.673 kb on + strand, within MPMX19_05923at 57.673 kb on + strand, within MPMX19_05923at 57.673 kb on + strand, within MPMX19_05923at 57.673 kb on + strand, within MPMX19_05923at 57.673 kb on + strand, within MPMX19_05923at 57.673 kb on + strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.674 kb on - strand, within MPMX19_05923at 57.676 kb on + strand, within MPMX19_05923at 57.676 kb on + strand, within MPMX19_05923at 57.676 kb on + strand, within MPMX19_05923at 57.676 kb on + strand, within MPMX19_05923at 57.677 kb on - strand, within MPMX19_05923at 57.677 kb on - strand, within MPMX19_05923at 57.677 kb on - strand, within MPMX19_05923at 57.677 kb on - strand, within MPMX19_05923at 57.751 kb on + strand, within MPMX19_05923at 57.751 kb on + strand, within MPMX19_05923at 57.752 kb on - strand, within MPMX19_05923at 57.752 kb on - strand, within MPMX19_05923at 58.024 kb on + strand, within MPMX19_05923at 58.025 kb on - strand, within MPMX19_05923at 58.025 kb on - strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.064 kb on - strand, within MPMX19_05923at 58.064 kb on - strand, within MPMX19_05923at 58.064 kb on - strand, within MPMX19_05923at 58.064 kb on - strand, within MPMX19_05923

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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55,373 + MPMX19_05920 0.87 -0.6
55,373 + MPMX19_05920 0.87 +0.3
55,373 + MPMX19_05920 0.87 +2.2
55,373 + MPMX19_05920 0.87 -1.1
55,373 + MPMX19_05920 0.87 -0.3
55,374 - MPMX19_05920 0.87 +0.4
55,374 - MPMX19_05920 0.87 +0.8
55,374 - MPMX19_05920 0.87 -0.8
55,374 - MPMX19_05920 0.87 +1.0
55,497 + +0.3
55,497 + -1.1
55,497 + -2.6
55,498 - -1.1
55,498 - -1.1
55,498 - -0.1
56,162 + MPMX19_05921 0.85 +0.3
56,162 + MPMX19_05921 0.85 -2.3
56,162 + MPMX19_05921 0.85 -0.9
56,163 - MPMX19_05921 0.85 -1.0
56,163 - MPMX19_05921 0.85 -0.2
56,564 + MPMX19_05922 0.32 -0.4
56,564 + MPMX19_05922 0.32 +2.5
56,564 + MPMX19_05922 0.32 -0.3
56,564 + MPMX19_05922 0.32 -1.7
56,564 + MPMX19_05922 0.32 +0.3
56,564 + MPMX19_05922 0.32 -1.4
56,564 + MPMX19_05922 0.32 +1.0
56,565 - MPMX19_05922 0.32 +0.6
56,565 - MPMX19_05922 0.32 -0.3
56,565 - MPMX19_05922 0.32 +0.9
56,565 - MPMX19_05922 0.32 +0.0
56,565 - MPMX19_05922 0.32 +0.4
56,565 - MPMX19_05922 0.32 -1.5
56,612 + MPMX19_05922 0.37 +0.7
56,613 - MPMX19_05922 0.38 +0.4
56,613 - MPMX19_05922 0.38 +0.3
56,613 - MPMX19_05922 0.38 -1.1
56,639 + MPMX19_05922 0.41 -1.1
56,639 + MPMX19_05922 0.41 -2.0
56,639 + MPMX19_05922 0.41 -1.0
56,639 + MPMX19_05922 0.41 +0.2
56,639 + MPMX19_05922 0.41 -0.1
56,639 + MPMX19_05922 0.41 +0.1
56,639 + MPMX19_05922 0.41 +0.2
56,639 + MPMX19_05922 0.41 +0.2
56,639 + MPMX19_05922 0.41 +0.2
56,639 + MPMX19_05922 0.41 -0.8
56,639 + MPMX19_05922 0.41 -1.1
56,639 + MPMX19_05922 0.41 -1.2
56,640 - MPMX19_05922 0.41 -0.8
56,640 - MPMX19_05922 0.41 -0.8
56,640 - MPMX19_05922 0.41 +0.7
56,640 - MPMX19_05922 0.41 -1.3
56,640 - MPMX19_05922 0.41 -0.1
56,640 - MPMX19_05922 0.41 +1.4
56,640 - MPMX19_05922 0.41 +2.0
56,640 - MPMX19_05922 0.41 -1.9
56,640 - MPMX19_05922 0.41 +0.8
56,640 - MPMX19_05922 0.41 -2.1
56,640 - MPMX19_05922 0.41 +0.6
56,640 - MPMX19_05922 0.41 -1.0
56,640 - MPMX19_05922 0.41 -1.9
56,640 - MPMX19_05922 0.41 -1.4
56,640 - MPMX19_05922 0.41 -0.1
56,813 + MPMX19_05922 0.61 +0.1
56,813 + MPMX19_05922 0.61 -0.8
56,813 + MPMX19_05922 0.61 -0.4
56,813 + MPMX19_05922 0.61 -0.3
56,813 + MPMX19_05922 0.61 +0.6
56,813 + MPMX19_05922 0.61 -0.6
56,813 + MPMX19_05922 0.61 +1.0
56,813 + MPMX19_05922 0.61 +0.4
56,813 + MPMX19_05922 0.61 -0.1
56,813 + MPMX19_05922 0.61 -0.8
56,813 + MPMX19_05922 0.61 -0.8
56,814 - MPMX19_05922 0.62 -1.1
56,814 - MPMX19_05922 0.62 -1.1
56,814 - MPMX19_05922 0.62 +0.4
56,814 - MPMX19_05922 0.62 -2.6
56,814 - MPMX19_05922 0.62 +0.6
56,814 - MPMX19_05922 0.62 -0.7
56,814 - MPMX19_05922 0.62 -0.3
56,814 - MPMX19_05922 0.62 +0.7
56,814 - MPMX19_05922 0.62 -1.4
56,814 - MPMX19_05922 0.62 -1.9
56,814 - MPMX19_05922 0.62 -0.1
56,814 - MPMX19_05922 0.62 -1.2
56,978 + MPMX19_05922 0.81 -0.4
56,978 + MPMX19_05922 0.81 +0.2
56,978 + MPMX19_05922 0.81 -0.3
56,978 + MPMX19_05922 0.81 -0.8
56,978 + MPMX19_05922 0.81 +0.3
56,978 + MPMX19_05922 0.81 -2.1
56,978 + MPMX19_05922 0.81 -0.8
56,978 + MPMX19_05922 0.81 -1.5
56,978 + MPMX19_05922 0.81 -1.0
56,978 + MPMX19_05922 0.81 -0.5
56,978 + MPMX19_05922 0.81 +0.8
56,978 + MPMX19_05922 0.81 -0.3
56,978 + MPMX19_05922 0.81 +0.6
56,978 + MPMX19_05922 0.81 -0.2
56,978 + MPMX19_05922 0.81 -0.9
56,978 + MPMX19_05922 0.81 +0.0
56,978 + MPMX19_05922 0.81 -1.1
56,979 - MPMX19_05922 0.81 -0.0
56,979 - MPMX19_05922 0.81 -0.4
56,979 - MPMX19_05922 0.81 -0.3
56,979 - MPMX19_05922 0.81 -0.3
56,979 - MPMX19_05922 0.81 +0.0
56,979 - MPMX19_05922 0.81 -0.8
56,979 - MPMX19_05922 0.81 +0.8
56,979 - MPMX19_05922 0.81 -1.6
56,979 - MPMX19_05922 0.81 -1.1
56,979 - MPMX19_05922 0.81 +1.2
56,979 - MPMX19_05922 0.81 -1.3
56,979 - MPMX19_05922 0.81 -0.6
56,979 - MPMX19_05922 0.81 -0.8
56,979 - MPMX19_05922 0.81 -0.8
56,979 - MPMX19_05922 0.81 +1.3
56,979 - MPMX19_05922 0.81 -0.6
56,979 - MPMX19_05922 0.81 -2.0
56,979 - MPMX19_05922 0.81 +1.2
56,979 - MPMX19_05922 0.81 -0.1
56,979 - MPMX19_05922 0.81 +1.0
56,979 - MPMX19_05922 0.81 +0.4
56,979 - MPMX19_05922 0.81 -0.3
56,979 - MPMX19_05922 0.81 -1.9
56,979 - MPMX19_05922 0.81 +0.9
56,979 - MPMX19_05922 0.81 +0.0
57,238 + +0.5
57,238 + -0.2
57,238 + -0.3
57,238 + +0.3
57,239 - -1.6
57,239 - -0.2
57,307 + -0.1
57,307 + -0.5
57,307 + +0.2
57,307 + -0.6
57,307 + +0.9
57,307 + -1.1
57,307 + +0.8
57,307 + -1.4
57,308 - +1.0
57,308 - -1.6
57,308 - -0.4
57,308 - -0.4
57,308 - +1.4
57,308 - -0.2
57,308 - +1.4
57,308 - -0.6
57,310 + +0.7
57,310 + -0.3
57,476 + MPMX19_05923 0.14 +1.4
57,477 - MPMX19_05923 0.14 -1.6
57,638 + MPMX19_05923 0.24 -1.7
57,638 + MPMX19_05923 0.24 -0.1
57,638 + MPMX19_05923 0.24 +0.7
57,638 + MPMX19_05923 0.24 +1.3
57,638 + MPMX19_05923 0.24 +0.2
57,638 + MPMX19_05923 0.24 -1.4
57,638 + MPMX19_05923 0.24 -0.9
57,638 + MPMX19_05923 0.24 -1.1
57,639 - MPMX19_05923 0.24 +0.3
57,639 - MPMX19_05923 0.24 -0.4
57,639 - MPMX19_05923 0.24 +1.5
57,639 - MPMX19_05923 0.24 +0.6
57,639 - MPMX19_05923 0.24 +0.9
57,639 - MPMX19_05923 0.24 -0.8
57,673 + MPMX19_05923 0.26 -2.0
57,673 + MPMX19_05923 0.26 -1.4
57,673 + MPMX19_05923 0.26 -1.1
57,673 + MPMX19_05923 0.26 -1.4
57,673 + MPMX19_05923 0.26 -1.0
57,673 + MPMX19_05923 0.26 +0.2
57,673 + MPMX19_05923 0.26 +1.8
57,674 - MPMX19_05923 0.26 +1.3
57,674 - MPMX19_05923 0.26 -0.4
57,674 - MPMX19_05923 0.26 -2.7
57,674 - MPMX19_05923 0.26 +0.7
57,674 - MPMX19_05923 0.26 +0.4
57,674 - MPMX19_05923 0.26 -2.3
57,674 - MPMX19_05923 0.26 -2.1
57,674 - MPMX19_05923 0.26 +0.8
57,674 - MPMX19_05923 0.26 +0.0
57,674 - MPMX19_05923 0.26 -1.1
57,674 - MPMX19_05923 0.26 -0.8
57,674 - MPMX19_05923 0.26 +0.7
57,674 - MPMX19_05923 0.26 -0.6
57,676 + MPMX19_05923 0.26 -1.0
57,676 + MPMX19_05923 0.26 +1.0
57,676 + MPMX19_05923 0.26 -1.4
57,676 + MPMX19_05923 0.26 +1.0
57,677 - MPMX19_05923 0.26 -0.9
57,677 - MPMX19_05923 0.26 -0.3
57,677 - MPMX19_05923 0.26 -0.3
57,677 - MPMX19_05923 0.26 -0.2
57,751 + MPMX19_05923 0.31 -0.3
57,751 + MPMX19_05923 0.31 -0.5
57,752 - MPMX19_05923 0.31 +0.5
57,752 - MPMX19_05923 0.31 -0.7
58,024 + MPMX19_05923 0.47 +1.2
58,025 - MPMX19_05923 0.47 -1.4
58,025 - MPMX19_05923 0.47 +2.0
58,063 + MPMX19_05923 0.50 +1.3
58,063 + MPMX19_05923 0.50 -0.8
58,063 + MPMX19_05923 0.50 -0.2
58,063 + MPMX19_05923 0.50 -0.8
58,063 + MPMX19_05923 0.50 +1.4
58,063 + MPMX19_05923 0.50 -0.6
58,064 - MPMX19_05923 0.50 -1.1
58,064 - MPMX19_05923 0.50 +1.3
58,064 - MPMX19_05923 0.50 -0.8
58,064 - MPMX19_05923 0.50 +1.4

Or see this region's nucleotide sequence