Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05808 and MPMX19_05809 are separated by 17 nucleotides MPMX19_05809 and MPMX19_05810 are separated by 344 nucleotides MPMX19_05810 and MPMX19_05811 are separated by 27 nucleotides
MPMX19_05808: MPMX19_05808 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreA, at 534,111 to 535,394
_05808
MPMX19_05809: MPMX19_05809 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreT, at 535,412 to 536,722
_05809
MPMX19_05810: MPMX19_05810 - Methylated-DNA--protein-cysteine methyltransferase, at 537,067 to 537,603
_05810
MPMX19_05811: MPMX19_05811 - 2,4-dienoyl-CoA reductase, at 537,631 to 539,682
_05811
Position (kb) 535
536
537 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.703 kb on + strand, within MPMX19_05808 at 534.703 kb on + strand, within MPMX19_05808 at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.539 kb on + strand at 535.539 kb on + strand at 535.540 kb on - strand at 535.540 kb on - strand at 535.818 kb on + strand, within MPMX19_05809 at 535.818 kb on + strand, within MPMX19_05809 at 535.819 kb on - strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.176 kb on - strand, within MPMX19_05809 at 536.176 kb on - strand, within MPMX19_05809 at 536.190 kb on + strand, within MPMX19_05809 at 536.190 kb on + strand, within MPMX19_05809 at 536.191 kb on - strand, within MPMX19_05809 at 536.191 kb on - strand, within MPMX19_05809 at 536.601 kb on + strand at 536.601 kb on + strand at 536.602 kb on - strand at 536.602 kb on - strand at 536.602 kb on - strand at 536.707 kb on + strand at 536.707 kb on + strand at 536.707 kb on + strand at 536.707 kb on + strand at 536.708 kb on - strand at 536.760 kb on + strand at 536.760 kb on + strand at 536.761 kb on - strand at 536.858 kb on + strand at 536.859 kb on - strand at 537.053 kb on + strand at 537.223 kb on + strand, within MPMX19_05810 at 537.277 kb on + strand, within MPMX19_05810 at 537.277 kb on + strand, within MPMX19_05810 at 537.277 kb on + strand, within MPMX19_05810 at 537.278 kb on - strand, within MPMX19_05810 at 537.278 kb on - strand, within MPMX19_05810 at 537.278 kb on - strand, within MPMX19_05810 at 537.278 kb on - strand, within MPMX19_05810 at 537.278 kb on - strand, within MPMX19_05810 at 537.278 kb on - strand, within MPMX19_05810 at 537.278 kb on - strand, within MPMX19_05810 at 537.278 kb on - strand, within MPMX19_05810 at 537.278 kb on - strand, within MPMX19_05810 at 537.395 kb on - strand, within MPMX19_05810 at 537.395 kb on - strand, within MPMX19_05810 at 537.395 kb on - strand, within MPMX19_05810 at 537.612 kb on + strand at 537.612 kb on + strand at 537.612 kb on + strand at 537.613 kb on - strand at 537.613 kb on - strand at 537.632 kb on + strand at 537.632 kb on + strand at 537.632 kb on + strand at 537.632 kb on + strand at 537.632 kb on + strand at 537.633 kb on - strand at 537.633 kb on - strand at 537.633 kb on - strand at 537.633 kb on - strand at 537.633 kb on - strand at 537.633 kb on - strand at 537.633 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 534,526 + MPMX19_05808 0.32 -1.0 534,526 + MPMX19_05808 0.32 -0.7 534,526 + MPMX19_05808 0.32 -0.3 534,526 + MPMX19_05808 0.32 -0.3 534,526 + MPMX19_05808 0.32 +0.4 534,526 + MPMX19_05808 0.32 -0.5 534,526 + MPMX19_05808 0.32 -0.3 534,527 - MPMX19_05808 0.32 -0.2 534,527 - MPMX19_05808 0.32 +1.4 534,527 - MPMX19_05808 0.32 +0.5 534,527 - MPMX19_05808 0.32 -0.3 534,527 - MPMX19_05808 0.32 -1.2 534,527 - MPMX19_05808 0.32 -1.9 534,527 - MPMX19_05808 0.32 -0.1 534,527 - MPMX19_05808 0.32 -1.9 534,527 - MPMX19_05808 0.32 -3.0 534,527 - MPMX19_05808 0.32 +1.6 534,527 - MPMX19_05808 0.32 +1.0 534,527 - MPMX19_05808 0.32 -1.2 534,527 - MPMX19_05808 0.32 -2.7 534,703 + MPMX19_05808 0.46 +0.8 534,703 + MPMX19_05808 0.46 -0.6 535,309 + -0.1 535,309 + +0.8 535,309 + -0.8 535,309 + +0.6 535,309 + +0.4 535,309 + +0.4 535,309 + -0.4 535,309 + +1.0 535,309 + +0.0 535,309 + -0.7 535,309 + -0.8 535,309 + +2.0 535,310 - -0.1 535,310 - +0.1 535,310 - +0.6 535,310 - -0.0 535,310 - -0.3 535,310 - -0.8 535,310 - -1.2 535,310 - -0.1 535,310 - +0.2 535,310 - -1.3 535,310 - -1.2 535,539 + -0.2 535,539 + -0.3 535,540 - -0.6 535,540 - -1.2 535,818 + MPMX19_05809 0.31 +2.5 535,818 + MPMX19_05809 0.31 +0.6 535,819 - MPMX19_05809 0.31 +0.4 536,175 + MPMX19_05809 0.58 -0.1 536,175 + MPMX19_05809 0.58 +0.2 536,175 + MPMX19_05809 0.58 +0.4 536,175 + MPMX19_05809 0.58 -1.1 536,175 + MPMX19_05809 0.58 +0.2 536,175 + MPMX19_05809 0.58 +0.2 536,176 - MPMX19_05809 0.58 -0.8 536,176 - MPMX19_05809 0.58 -0.4 536,190 + MPMX19_05809 0.59 -0.3 536,190 + MPMX19_05809 0.59 +0.2 536,191 - MPMX19_05809 0.59 -0.5 536,191 - MPMX19_05809 0.59 -0.3 536,601 + -0.4 536,601 + -1.6 536,602 - -0.6 536,602 - -0.8 536,602 - -0.6 536,707 + -0.3 536,707 + -0.1 536,707 + -0.7 536,707 + -0.7 536,708 - +1.0 536,760 + +0.2 536,760 + -0.8 536,761 - -0.5 536,858 + -1.2 536,859 - +0.2 537,053 + +0.5 537,223 + MPMX19_05810 0.29 -0.4 537,277 + MPMX19_05810 0.39 +0.6 537,277 + MPMX19_05810 0.39 -0.1 537,277 + MPMX19_05810 0.39 +0.1 537,278 - MPMX19_05810 0.39 -1.2 537,278 - MPMX19_05810 0.39 -0.6 537,278 - MPMX19_05810 0.39 -1.6 537,278 - MPMX19_05810 0.39 -1.5 537,278 - MPMX19_05810 0.39 -0.5 537,278 - MPMX19_05810 0.39 -0.9 537,278 - MPMX19_05810 0.39 +0.4 537,278 - MPMX19_05810 0.39 -0.3 537,278 - MPMX19_05810 0.39 +0.6 537,395 - MPMX19_05810 0.61 -0.8 537,395 - MPMX19_05810 0.61 -2.0 537,395 - MPMX19_05810 0.61 -0.3 537,612 + -0.3 537,612 + -0.1 537,612 + +0.8 537,613 - -0.9 537,613 - -1.7 537,632 + -1.8 537,632 + +1.2 537,632 + +0.2 537,632 + -0.8 537,632 + -0.0 537,633 - -0.9 537,633 - -1.2 537,633 - -1.0 537,633 - -1.3 537,633 - -1.6 537,633 - -1.5 537,633 - +0.4
Or see this region's nucleotide sequence