Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05732 and MPMX19_05733 overlap by 4 nucleotides MPMX19_05733 and MPMX19_05734 are separated by 5 nucleotides MPMX19_05734 and MPMX19_05735 are separated by 366 nucleotides MPMX19_05735 and MPMX19_05736 are separated by 76 nucleotides
MPMX19_05732: MPMX19_05732 - hypothetical protein, at 450,553 to 451,422
_05732
MPMX19_05733: MPMX19_05733 - Biopolymer transport protein ExbD, at 451,419 to 451,847
_05733
MPMX19_05734: MPMX19_05734 - Tol-Pal system protein TolQ, at 451,853 to 452,806
_05734
MPMX19_05735: MPMX19_05735 - hypothetical protein, at 453,173 to 453,427
_05735
MPMX19_05736: MPMX19_05736 - hypothetical protein, at 453,504 to 454,274
_05736
Position (kb) 451
452
453 Strain fitness (log2 ratio) -2
-1
0
1
2 at 451.465 kb on + strand, within MPMX19_05733 at 451.465 kb on + strand, within MPMX19_05733 at 451.510 kb on + strand, within MPMX19_05733 at 451.855 kb on - strand at 451.855 kb on - strand at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.037 kb on + strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.038 kb on - strand, within MPMX19_05734 at 452.747 kb on + strand at 452.748 kb on - strand at 452.892 kb on + strand at 453.005 kb on - strand at 453.034 kb on - strand at 453.069 kb on + strand at 453.069 kb on + strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.070 kb on - strand at 453.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 451,465 + MPMX19_05733 0.11 -1.6 451,465 + MPMX19_05733 0.11 -0.3 451,510 + MPMX19_05733 0.21 -0.6 451,855 - -0.2 451,855 - -0.5 452,037 + MPMX19_05734 0.19 -0.1 452,037 + MPMX19_05734 0.19 +0.3 452,037 + MPMX19_05734 0.19 -2.2 452,037 + MPMX19_05734 0.19 +0.3 452,037 + MPMX19_05734 0.19 -0.7 452,037 + MPMX19_05734 0.19 -0.5 452,037 + MPMX19_05734 0.19 -0.3 452,037 + MPMX19_05734 0.19 +0.6 452,038 - MPMX19_05734 0.19 +0.8 452,038 - MPMX19_05734 0.19 -1.2 452,038 - MPMX19_05734 0.19 +0.8 452,038 - MPMX19_05734 0.19 +0.5 452,038 - MPMX19_05734 0.19 -0.0 452,038 - MPMX19_05734 0.19 +0.8 452,038 - MPMX19_05734 0.19 +2.4 452,038 - MPMX19_05734 0.19 -0.2 452,038 - MPMX19_05734 0.19 +2.5 452,038 - MPMX19_05734 0.19 -1.0 452,038 - MPMX19_05734 0.19 +0.1 452,747 + +0.4 452,748 - -1.1 452,892 + -1.6 453,005 - -0.3 453,034 - -0.8 453,069 + -0.5 453,069 + -0.2 453,070 - -1.0 453,070 - +1.2 453,070 - +0.2 453,070 - -0.9 453,070 - +0.2 453,070 - -0.8 453,450 - -1.2
Or see this region's nucleotide sequence