Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05622 and MPMX19_05623 are separated by 9 nucleotides MPMX19_05623 and MPMX19_05624 are separated by 237 nucleotides
MPMX19_05622: MPMX19_05622 - Sensor histidine kinase RegB, at 336,142 to 337,536
_05622
MPMX19_05623: MPMX19_05623 - Photosynthetic apparatus regulatory protein RegA, at 337,546 to 338,142
_05623
MPMX19_05624: MPMX19_05624 - hypothetical protein, at 338,380 to 338,541
_05624
Position (kb) 337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 336.547 kb on + strand, within MPMX19_05622 at 336.548 kb on - strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.655 kb on + strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.656 kb on - strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.709 kb on + strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.710 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 336.908 kb on - strand, within MPMX19_05622 at 337.297 kb on + strand, within MPMX19_05622 at 337.298 kb on - strand, within MPMX19_05622 at 337.298 kb on - strand, within MPMX19_05622 at 337.298 kb on - strand, within MPMX19_05622 at 337.298 kb on - strand, within MPMX19_05622 at 337.298 kb on - strand, within MPMX19_05622 at 337.354 kb on - strand, within MPMX19_05622 at 337.354 kb on - strand, within MPMX19_05622 at 337.354 kb on - strand, within MPMX19_05622 at 337.354 kb on - strand, within MPMX19_05622 at 337.912 kb on + strand, within MPMX19_05623 at 337.912 kb on + strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.913 kb on - strand, within MPMX19_05623 at 337.943 kb on + strand, within MPMX19_05623 at 337.943 kb on + strand, within MPMX19_05623 at 337.943 kb on + strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 337.944 kb on - strand, within MPMX19_05623 at 338.469 kb on + strand, within MPMX19_05624 at 338.469 kb on + strand, within MPMX19_05624 at 338.469 kb on + strand, within MPMX19_05624 at 338.469 kb on + strand, within MPMX19_05624 at 338.599 kb on - strand at 338.738 kb on + strand at 338.738 kb on + strand at 338.739 kb on - strand at 338.944 kb on + strand at 338.945 kb on - strand at 338.945 kb on - strand at 338.971 kb on + strand at 338.971 kb on + strand at 338.971 kb on + strand at 338.972 kb on - strand at 338.972 kb on - strand at 338.972 kb on - strand at 339.000 kb on - strand at 339.058 kb on + strand at 339.058 kb on + strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand at 339.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 336,547 + MPMX19_05622 0.29 -0.3 336,548 - MPMX19_05622 0.29 -1.7 336,655 + MPMX19_05622 0.37 -0.8 336,655 + MPMX19_05622 0.37 -0.2 336,655 + MPMX19_05622 0.37 -1.1 336,655 + MPMX19_05622 0.37 -0.0 336,655 + MPMX19_05622 0.37 -0.0 336,656 - MPMX19_05622 0.37 +0.6 336,656 - MPMX19_05622 0.37 -0.5 336,656 - MPMX19_05622 0.37 +0.3 336,656 - MPMX19_05622 0.37 -1.2 336,656 - MPMX19_05622 0.37 -0.9 336,656 - MPMX19_05622 0.37 +0.3 336,656 - MPMX19_05622 0.37 -1.0 336,709 + MPMX19_05622 0.41 -0.0 336,709 + MPMX19_05622 0.41 +0.4 336,709 + MPMX19_05622 0.41 -0.7 336,709 + MPMX19_05622 0.41 -0.5 336,709 + MPMX19_05622 0.41 -0.1 336,710 - MPMX19_05622 0.41 -0.1 336,710 - MPMX19_05622 0.41 -0.0 336,710 - MPMX19_05622 0.41 -0.1 336,710 - MPMX19_05622 0.41 +0.8 336,908 - MPMX19_05622 0.55 -1.9 336,908 - MPMX19_05622 0.55 -3.4 336,908 - MPMX19_05622 0.55 -0.2 336,908 - MPMX19_05622 0.55 -0.2 336,908 - MPMX19_05622 0.55 -0.8 337,297 + MPMX19_05622 0.83 -1.2 337,298 - MPMX19_05622 0.83 +0.1 337,298 - MPMX19_05622 0.83 -0.8 337,298 - MPMX19_05622 0.83 -0.6 337,298 - MPMX19_05622 0.83 +0.1 337,298 - MPMX19_05622 0.83 -0.9 337,354 - MPMX19_05622 0.87 -0.0 337,354 - MPMX19_05622 0.87 -1.3 337,354 - MPMX19_05622 0.87 -1.6 337,354 - MPMX19_05622 0.87 +0.2 337,912 + MPMX19_05623 0.61 -0.1 337,912 + MPMX19_05623 0.61 +1.2 337,913 - MPMX19_05623 0.61 -0.0 337,913 - MPMX19_05623 0.61 -0.6 337,913 - MPMX19_05623 0.61 +0.4 337,913 - MPMX19_05623 0.61 +0.4 337,913 - MPMX19_05623 0.61 +1.0 337,943 + MPMX19_05623 0.66 +0.2 337,943 + MPMX19_05623 0.66 -2.4 337,943 + MPMX19_05623 0.66 +1.2 337,944 - MPMX19_05623 0.67 -0.3 337,944 - MPMX19_05623 0.67 -0.9 337,944 - MPMX19_05623 0.67 -1.8 337,944 - MPMX19_05623 0.67 +0.5 338,469 + MPMX19_05624 0.55 +0.4 338,469 + MPMX19_05624 0.55 -1.6 338,469 + MPMX19_05624 0.55 +1.0 338,469 + MPMX19_05624 0.55 -0.1 338,599 - +0.4 338,738 + +0.2 338,738 + -1.6 338,739 - -0.3 338,944 + +1.2 338,945 - -1.2 338,945 - -0.9 338,971 + +0.6 338,971 + -0.2 338,971 + +0.8 338,972 - -0.3 338,972 - -1.5 338,972 - -0.3 339,000 - -1.5 339,058 + +1.0 339,058 + +1.1 339,059 - -0.0 339,059 - -1.0 339,059 - -1.7 339,059 - -0.5 339,059 - -0.6 339,059 - +0.4 339,059 - +0.0 339,059 - -0.6 339,059 - -1.3 339,059 - +0.2 339,059 - -1.4
Or see this region's nucleotide sequence