Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05622

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05620 and MPMX19_05621 overlap by 14 nucleotidesMPMX19_05621 and MPMX19_05622 are separated by 63 nucleotidesMPMX19_05622 and MPMX19_05623 are separated by 9 nucleotidesMPMX19_05623 and MPMX19_05624 are separated by 237 nucleotides MPMX19_05620: MPMX19_05620 - hypothetical protein, at 334,425 to 335,264 _05620 MPMX19_05621: MPMX19_05621 - ABC transporter ATP-binding protein NatA, at 335,251 to 336,078 _05621 MPMX19_05622: MPMX19_05622 - Sensor histidine kinase RegB, at 336,142 to 337,536 _05622 MPMX19_05623: MPMX19_05623 - Photosynthetic apparatus regulatory protein RegA, at 337,546 to 338,142 _05623 MPMX19_05624: MPMX19_05624 - hypothetical protein, at 338,380 to 338,541 _05624 Position (kb) 336 337 338Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 335.143 kb on + strand, within MPMX19_05620at 335.143 kb on + strand, within MPMX19_05620at 335.143 kb on + strand, within MPMX19_05620at 335.143 kb on + strand, within MPMX19_05620at 335.143 kb on + strand, within MPMX19_05620at 335.144 kb on - strand, within MPMX19_05620at 335.144 kb on - strand, within MPMX19_05620at 335.144 kb on - strand, within MPMX19_05620at 335.144 kb on - strand, within MPMX19_05620at 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.191 kb on + strandat 335.192 kb on - strandat 335.495 kb on + strand, within MPMX19_05621at 335.495 kb on + strand, within MPMX19_05621at 335.495 kb on + strand, within MPMX19_05621at 335.495 kb on + strand, within MPMX19_05621at 335.495 kb on + strand, within MPMX19_05621at 335.495 kb on + strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.706 kb on - strand, within MPMX19_05621at 335.717 kb on + strand, within MPMX19_05621at 335.717 kb on + strand, within MPMX19_05621at 335.717 kb on + strand, within MPMX19_05621at 335.717 kb on + strand, within MPMX19_05621at 335.717 kb on + strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.724 kb on + strand, within MPMX19_05621at 335.725 kb on - strand, within MPMX19_05621at 335.725 kb on - strand, within MPMX19_05621at 335.765 kb on + strand, within MPMX19_05621at 335.765 kb on + strand, within MPMX19_05621at 335.765 kb on + strand, within MPMX19_05621at 335.765 kb on + strand, within MPMX19_05621at 335.765 kb on + strand, within MPMX19_05621at 335.766 kb on - strand, within MPMX19_05621at 335.766 kb on - strand, within MPMX19_05621at 335.766 kb on - strand, within MPMX19_05621at 335.766 kb on - strand, within MPMX19_05621at 336.089 kb on + strandat 336.089 kb on + strandat 336.089 kb on + strandat 336.089 kb on + strandat 336.089 kb on + strandat 336.089 kb on + strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.427 kb on + strand, within MPMX19_05622at 336.427 kb on + strand, within MPMX19_05622at 336.427 kb on + strand, within MPMX19_05622at 336.427 kb on + strand, within MPMX19_05622at 336.427 kb on + strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.439 kb on - strand, within MPMX19_05622at 336.466 kb on + strand, within MPMX19_05622at 336.466 kb on + strand, within MPMX19_05622at 336.466 kb on + strand, within MPMX19_05622at 336.466 kb on + strand, within MPMX19_05622at 336.467 kb on - strand, within MPMX19_05622at 336.467 kb on - strand, within MPMX19_05622at 336.467 kb on - strand, within MPMX19_05622at 336.467 kb on - strand, within MPMX19_05622at 336.467 kb on - strand, within MPMX19_05622at 336.547 kb on + strand, within MPMX19_05622at 336.548 kb on - strand, within MPMX19_05622at 336.655 kb on + strand, within MPMX19_05622at 336.655 kb on + strand, within MPMX19_05622at 336.655 kb on + strand, within MPMX19_05622at 336.655 kb on + strand, within MPMX19_05622at 336.655 kb on + strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.709 kb on + strand, within MPMX19_05622at 336.709 kb on + strand, within MPMX19_05622at 336.709 kb on + strand, within MPMX19_05622at 336.709 kb on + strand, within MPMX19_05622at 336.709 kb on + strand, within MPMX19_05622at 336.710 kb on - strand, within MPMX19_05622at 336.710 kb on - strand, within MPMX19_05622at 336.710 kb on - strand, within MPMX19_05622at 336.710 kb on - strand, within MPMX19_05622at 336.908 kb on - strand, within MPMX19_05622at 336.908 kb on - strand, within MPMX19_05622at 336.908 kb on - strand, within MPMX19_05622at 336.908 kb on - strand, within MPMX19_05622at 336.908 kb on - strand, within MPMX19_05622at 337.297 kb on + strand, within MPMX19_05622at 337.298 kb on - strand, within MPMX19_05622at 337.298 kb on - strand, within MPMX19_05622at 337.298 kb on - strand, within MPMX19_05622at 337.298 kb on - strand, within MPMX19_05622at 337.298 kb on - strand, within MPMX19_05622at 337.354 kb on - strand, within MPMX19_05622at 337.354 kb on - strand, within MPMX19_05622at 337.354 kb on - strand, within MPMX19_05622at 337.354 kb on - strand, within MPMX19_05622at 337.912 kb on + strand, within MPMX19_05623at 337.912 kb on + strand, within MPMX19_05623at 337.913 kb on - strand, within MPMX19_05623at 337.913 kb on - strand, within MPMX19_05623at 337.913 kb on - strand, within MPMX19_05623at 337.913 kb on - strand, within MPMX19_05623at 337.913 kb on - strand, within MPMX19_05623at 337.943 kb on + strand, within MPMX19_05623at 337.943 kb on + strand, within MPMX19_05623at 337.943 kb on + strand, within MPMX19_05623at 337.944 kb on - strand, within MPMX19_05623at 337.944 kb on - strand, within MPMX19_05623at 337.944 kb on - strand, within MPMX19_05623at 337.944 kb on - strand, within MPMX19_05623at 338.469 kb on + strand, within MPMX19_05624at 338.469 kb on + strand, within MPMX19_05624at 338.469 kb on + strand, within MPMX19_05624at 338.469 kb on + strand, within MPMX19_05624

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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335,143 + MPMX19_05620 0.85 -0.9
335,143 + MPMX19_05620 0.85 +1.3
335,143 + MPMX19_05620 0.85 -0.6
335,143 + MPMX19_05620 0.85 -0.1
335,143 + MPMX19_05620 0.85 +0.2
335,144 - MPMX19_05620 0.86 -2.2
335,144 - MPMX19_05620 0.86 +0.1
335,144 - MPMX19_05620 0.86 -1.8
335,144 - MPMX19_05620 0.86 -0.7
335,185 + -1.6
335,185 + +0.4
335,185 + +1.5
335,185 + -0.5
335,185 + -1.3
335,185 + +0.3
335,185 + +0.8
335,185 + -0.5
335,185 + -0.4
335,186 - -1.9
335,186 - -0.1
335,186 - +2.0
335,186 - +0.9
335,186 - -0.0
335,186 - -0.7
335,186 - -0.0
335,186 - -1.2
335,186 - -0.7
335,186 - -0.4
335,186 - -0.1
335,191 + -0.3
335,192 - -0.8
335,495 + MPMX19_05621 0.29 -1.9
335,495 + MPMX19_05621 0.29 -1.2
335,495 + MPMX19_05621 0.29 +0.1
335,495 + MPMX19_05621 0.29 -2.0
335,495 + MPMX19_05621 0.29 +0.8
335,495 + MPMX19_05621 0.29 +0.7
335,496 - MPMX19_05621 0.30 -2.0
335,496 - MPMX19_05621 0.30 -1.6
335,496 - MPMX19_05621 0.30 +0.8
335,496 - MPMX19_05621 0.30 +0.3
335,496 - MPMX19_05621 0.30 -0.2
335,496 - MPMX19_05621 0.30 +1.2
335,496 - MPMX19_05621 0.30 +2.0
335,496 - MPMX19_05621 0.30 +1.0
335,706 - MPMX19_05621 0.55 +0.5
335,717 + MPMX19_05621 0.56 -0.1
335,717 + MPMX19_05621 0.56 -0.3
335,717 + MPMX19_05621 0.56 -0.3
335,717 + MPMX19_05621 0.56 +1.2
335,717 + MPMX19_05621 0.56 -0.8
335,718 - MPMX19_05621 0.56 +1.2
335,718 - MPMX19_05621 0.56 -2.2
335,718 - MPMX19_05621 0.56 -0.1
335,718 - MPMX19_05621 0.56 +1.0
335,718 - MPMX19_05621 0.56 -0.9
335,718 - MPMX19_05621 0.56 +0.4
335,718 - MPMX19_05621 0.56 -1.1
335,724 + MPMX19_05621 0.57 -0.6
335,725 - MPMX19_05621 0.57 -0.3
335,725 - MPMX19_05621 0.57 -0.0
335,765 + MPMX19_05621 0.62 -1.1
335,765 + MPMX19_05621 0.62 -0.6
335,765 + MPMX19_05621 0.62 -0.1
335,765 + MPMX19_05621 0.62 -0.4
335,765 + MPMX19_05621 0.62 -0.4
335,766 - MPMX19_05621 0.62 +0.2
335,766 - MPMX19_05621 0.62 +0.7
335,766 - MPMX19_05621 0.62 -0.8
335,766 - MPMX19_05621 0.62 -0.4
336,089 + -0.8
336,089 + -0.3
336,089 + -1.0
336,089 + +0.8
336,089 + -0.6
336,089 + -1.2
336,090 - -0.0
336,090 - +0.3
336,090 - +0.4
336,090 - -0.7
336,090 - -0.2
336,090 - -0.3
336,090 - -0.1
336,090 - +1.0
336,427 + MPMX19_05622 0.20 -1.5
336,427 + MPMX19_05622 0.20 +0.4
336,427 + MPMX19_05622 0.20 +0.2
336,427 + MPMX19_05622 0.20 -0.0
336,427 + MPMX19_05622 0.20 +2.0
336,428 - MPMX19_05622 0.21 +0.4
336,428 - MPMX19_05622 0.21 +0.4
336,428 - MPMX19_05622 0.21 -0.2
336,428 - MPMX19_05622 0.21 -0.3
336,428 - MPMX19_05622 0.21 +0.2
336,428 - MPMX19_05622 0.21 +0.8
336,428 - MPMX19_05622 0.21 +0.8
336,428 - MPMX19_05622 0.21 -0.2
336,428 - MPMX19_05622 0.21 +0.1
336,428 - MPMX19_05622 0.21 -0.8
336,436 + MPMX19_05622 0.21 -1.3
336,436 + MPMX19_05622 0.21 -0.9
336,436 + MPMX19_05622 0.21 -0.6
336,436 + MPMX19_05622 0.21 +2.0
336,436 + MPMX19_05622 0.21 +0.6
336,436 + MPMX19_05622 0.21 -0.8
336,436 + MPMX19_05622 0.21 +1.0
336,437 - MPMX19_05622 0.21 -0.4
336,437 - MPMX19_05622 0.21 -0.0
336,437 - MPMX19_05622 0.21 -1.2
336,437 - MPMX19_05622 0.21 -1.3
336,437 - MPMX19_05622 0.21 +0.2
336,437 - MPMX19_05622 0.21 +0.6
336,437 - MPMX19_05622 0.21 -0.0
336,437 - MPMX19_05622 0.21 -0.0
336,437 - MPMX19_05622 0.21 -1.0
336,437 - MPMX19_05622 0.21 -0.1
336,439 - MPMX19_05622 0.21 -0.2
336,466 + MPMX19_05622 0.23 -0.6
336,466 + MPMX19_05622 0.23 -1.0
336,466 + MPMX19_05622 0.23 -0.3
336,466 + MPMX19_05622 0.23 -0.3
336,467 - MPMX19_05622 0.23 -0.5
336,467 - MPMX19_05622 0.23 -0.0
336,467 - MPMX19_05622 0.23 -1.2
336,467 - MPMX19_05622 0.23 +1.0
336,467 - MPMX19_05622 0.23 -0.3
336,547 + MPMX19_05622 0.29 -0.3
336,548 - MPMX19_05622 0.29 -1.7
336,655 + MPMX19_05622 0.37 -0.8
336,655 + MPMX19_05622 0.37 -0.2
336,655 + MPMX19_05622 0.37 -1.1
336,655 + MPMX19_05622 0.37 -0.0
336,655 + MPMX19_05622 0.37 -0.0
336,656 - MPMX19_05622 0.37 +0.6
336,656 - MPMX19_05622 0.37 -0.5
336,656 - MPMX19_05622 0.37 +0.3
336,656 - MPMX19_05622 0.37 -1.2
336,656 - MPMX19_05622 0.37 -0.9
336,656 - MPMX19_05622 0.37 +0.3
336,656 - MPMX19_05622 0.37 -1.0
336,709 + MPMX19_05622 0.41 -0.0
336,709 + MPMX19_05622 0.41 +0.4
336,709 + MPMX19_05622 0.41 -0.7
336,709 + MPMX19_05622 0.41 -0.5
336,709 + MPMX19_05622 0.41 -0.1
336,710 - MPMX19_05622 0.41 -0.1
336,710 - MPMX19_05622 0.41 -0.0
336,710 - MPMX19_05622 0.41 -0.1
336,710 - MPMX19_05622 0.41 +0.8
336,908 - MPMX19_05622 0.55 -1.9
336,908 - MPMX19_05622 0.55 -3.4
336,908 - MPMX19_05622 0.55 -0.2
336,908 - MPMX19_05622 0.55 -0.2
336,908 - MPMX19_05622 0.55 -0.8
337,297 + MPMX19_05622 0.83 -1.2
337,298 - MPMX19_05622 0.83 +0.1
337,298 - MPMX19_05622 0.83 -0.8
337,298 - MPMX19_05622 0.83 -0.6
337,298 - MPMX19_05622 0.83 +0.1
337,298 - MPMX19_05622 0.83 -0.9
337,354 - MPMX19_05622 0.87 -0.0
337,354 - MPMX19_05622 0.87 -1.3
337,354 - MPMX19_05622 0.87 -1.6
337,354 - MPMX19_05622 0.87 +0.2
337,912 + MPMX19_05623 0.61 -0.1
337,912 + MPMX19_05623 0.61 +1.2
337,913 - MPMX19_05623 0.61 -0.0
337,913 - MPMX19_05623 0.61 -0.6
337,913 - MPMX19_05623 0.61 +0.4
337,913 - MPMX19_05623 0.61 +0.4
337,913 - MPMX19_05623 0.61 +1.0
337,943 + MPMX19_05623 0.66 +0.2
337,943 + MPMX19_05623 0.66 -2.4
337,943 + MPMX19_05623 0.66 +1.2
337,944 - MPMX19_05623 0.67 -0.3
337,944 - MPMX19_05623 0.67 -0.9
337,944 - MPMX19_05623 0.67 -1.8
337,944 - MPMX19_05623 0.67 +0.5
338,469 + MPMX19_05624 0.55 +0.4
338,469 + MPMX19_05624 0.55 -1.6
338,469 + MPMX19_05624 0.55 +1.0
338,469 + MPMX19_05624 0.55 -0.1

Or see this region's nucleotide sequence