Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05607

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05605 and MPMX19_05606 are separated by 160 nucleotidesMPMX19_05606 and MPMX19_05607 are separated by 124 nucleotidesMPMX19_05607 and MPMX19_05608 overlap by 4 nucleotides MPMX19_05605: MPMX19_05605 - hypothetical protein, at 316,518 to 316,892 _05605 MPMX19_05606: MPMX19_05606 - hypothetical protein, at 317,053 to 317,445 _05606 MPMX19_05607: MPMX19_05607 - Sensor histidine kinase RcsC, at 317,570 to 320,332 _05607 MPMX19_05608: MPMX19_05608 - hypothetical protein, at 320,329 to 321,180 _05608 Position (kb) 317 318 319 320 321Strain fitness (log2 ratio) -2 -1 0 1 2at 316.821 kb on + strand, within MPMX19_05605at 316.821 kb on + strand, within MPMX19_05605at 316.822 kb on - strand, within MPMX19_05605at 316.822 kb on - strand, within MPMX19_05605at 316.822 kb on - strand, within MPMX19_05605at 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.051 kb on + strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.052 kb on - strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.090 kb on + strandat 317.207 kb on + strand, within MPMX19_05606at 317.207 kb on + strand, within MPMX19_05606at 317.207 kb on + strand, within MPMX19_05606at 317.207 kb on + strand, within MPMX19_05606at 317.563 kb on + strandat 317.564 kb on - strandat 317.564 kb on - strandat 318.711 kb on + strand, within MPMX19_05607at 318.711 kb on + strand, within MPMX19_05607at 318.711 kb on + strand, within MPMX19_05607at 319.488 kb on + strand, within MPMX19_05607at 319.489 kb on - strand, within MPMX19_05607at 319.716 kb on + strand, within MPMX19_05607at 319.716 kb on + strand, within MPMX19_05607at 319.716 kb on + strand, within MPMX19_05607at 319.716 kb on + strand, within MPMX19_05607at 319.716 kb on + strand, within MPMX19_05607at 319.717 kb on - strand, within MPMX19_05607at 319.717 kb on - strand, within MPMX19_05607at 319.717 kb on - strand, within MPMX19_05607at 319.717 kb on - strand, within MPMX19_05607at 319.947 kb on + strand, within MPMX19_05607at 319.947 kb on + strand, within MPMX19_05607at 319.947 kb on + strand, within MPMX19_05607at 319.947 kb on + strand, within MPMX19_05607at 319.948 kb on - strand, within MPMX19_05607at 319.948 kb on - strand, within MPMX19_05607at 319.948 kb on - strand, within MPMX19_05607at 320.067 kb on + strandat 320.067 kb on + strandat 320.067 kb on + strandat 320.067 kb on + strandat 320.067 kb on + strandat 320.067 kb on + strandat 320.068 kb on - strandat 320.068 kb on - strandat 320.068 kb on - strandat 320.068 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.122 kb on - strandat 320.214 kb on + strandat 320.215 kb on - strandat 320.438 kb on + strand, within MPMX19_05608at 320.438 kb on + strand, within MPMX19_05608at 320.438 kb on + strand, within MPMX19_05608at 320.438 kb on + strand, within MPMX19_05608at 320.439 kb on - strand, within MPMX19_05608at 320.439 kb on - strand, within MPMX19_05608at 320.439 kb on - strand, within MPMX19_05608at 320.439 kb on - strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.525 kb on + strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.526 kb on - strand, within MPMX19_05608at 320.678 kb on + strand, within MPMX19_05608at 320.678 kb on + strand, within MPMX19_05608at 320.678 kb on + strand, within MPMX19_05608at 320.678 kb on + strand, within MPMX19_05608at 320.678 kb on + strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.679 kb on - strand, within MPMX19_05608at 320.798 kb on + strand, within MPMX19_05608at 320.798 kb on + strand, within MPMX19_05608at 320.798 kb on + strand, within MPMX19_05608at 320.799 kb on - strand, within MPMX19_05608at 320.799 kb on - strand, within MPMX19_05608at 320.846 kb on + strand, within MPMX19_05608at 320.846 kb on + strand, within MPMX19_05608at 320.846 kb on + strand, within MPMX19_05608at 320.846 kb on + strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.847 kb on - strand, within MPMX19_05608at 320.864 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.921 kb on + strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 320.922 kb on - strand, within MPMX19_05608at 321.026 kb on + strand, within MPMX19_05608at 321.026 kb on + strand, within MPMX19_05608at 321.026 kb on + strand, within MPMX19_05608at 321.027 kb on - strand, within MPMX19_05608at 321.027 kb on - strand, within MPMX19_05608at 321.268 kb on + strandat 321.268 kb on + strandat 321.282 kb on + strandat 321.282 kb on + strandat 321.282 kb on + strandat 321.283 kb on - strandat 321.283 kb on - strandat 321.306 kb on - strandat 321.306 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
316,821 + MPMX19_05605 0.81 -0.2
316,821 + MPMX19_05605 0.81 +0.9
316,822 - MPMX19_05605 0.81 -0.6
316,822 - MPMX19_05605 0.81 -1.2
316,822 - MPMX19_05605 0.81 -1.4
317,051 + -0.7
317,051 + -0.8
317,051 + -1.2
317,051 + -0.8
317,051 + +0.0
317,051 + +0.6
317,052 - +0.8
317,052 - +1.0
317,052 - -0.8
317,052 - +0.8
317,052 - +0.0
317,090 + +0.8
317,090 + -0.3
317,090 + +0.1
317,090 + +0.0
317,090 + +0.4
317,207 + MPMX19_05606 0.39 +0.6
317,207 + MPMX19_05606 0.39 -0.8
317,207 + MPMX19_05606 0.39 -1.8
317,207 + MPMX19_05606 0.39 +0.7
317,563 + +0.7
317,564 - -0.9
317,564 - +1.7
318,711 + MPMX19_05607 0.41 -1.3
318,711 + MPMX19_05607 0.41 -1.1
318,711 + MPMX19_05607 0.41 -0.8
319,488 + MPMX19_05607 0.69 -1.0
319,489 - MPMX19_05607 0.69 -1.9
319,716 + MPMX19_05607 0.78 -0.6
319,716 + MPMX19_05607 0.78 +0.2
319,716 + MPMX19_05607 0.78 -1.6
319,716 + MPMX19_05607 0.78 -0.8
319,716 + MPMX19_05607 0.78 +0.2
319,717 - MPMX19_05607 0.78 -0.8
319,717 - MPMX19_05607 0.78 +0.5
319,717 - MPMX19_05607 0.78 -1.5
319,717 - MPMX19_05607 0.78 -0.6
319,947 + MPMX19_05607 0.86 -0.8
319,947 + MPMX19_05607 0.86 -1.8
319,947 + MPMX19_05607 0.86 -1.2
319,947 + MPMX19_05607 0.86 -1.0
319,948 - MPMX19_05607 0.86 -0.8
319,948 - MPMX19_05607 0.86 +0.2
319,948 - MPMX19_05607 0.86 -1.6
320,067 + -0.4
320,067 + -0.2
320,067 + +0.3
320,067 + -0.9
320,067 + -0.2
320,067 + +1.2
320,068 - -1.6
320,068 - -1.1
320,068 - +1.5
320,068 - +0.9
320,122 - -1.7
320,122 - -0.4
320,122 - -0.4
320,122 - -0.8
320,122 - +0.6
320,122 - +0.3
320,122 - +0.0
320,122 - -0.3
320,214 + -0.1
320,215 - -1.0
320,438 + MPMX19_05608 0.13 -2.2
320,438 + MPMX19_05608 0.13 +0.4
320,438 + MPMX19_05608 0.13 -0.6
320,438 + MPMX19_05608 0.13 -1.2
320,439 - MPMX19_05608 0.13 -0.0
320,439 - MPMX19_05608 0.13 +0.3
320,439 - MPMX19_05608 0.13 -0.5
320,439 - MPMX19_05608 0.13 -1.3
320,525 + MPMX19_05608 0.23 +0.8
320,525 + MPMX19_05608 0.23 -0.8
320,525 + MPMX19_05608 0.23 +0.0
320,525 + MPMX19_05608 0.23 +0.5
320,525 + MPMX19_05608 0.23 +0.1
320,525 + MPMX19_05608 0.23 -0.9
320,525 + MPMX19_05608 0.23 +0.5
320,525 + MPMX19_05608 0.23 +0.7
320,525 + MPMX19_05608 0.23 -0.3
320,525 + MPMX19_05608 0.23 +1.1
320,525 + MPMX19_05608 0.23 -1.2
320,525 + MPMX19_05608 0.23 +0.0
320,525 + MPMX19_05608 0.23 -2.5
320,525 + MPMX19_05608 0.23 -0.7
320,525 + MPMX19_05608 0.23 +0.2
320,526 - MPMX19_05608 0.23 +0.4
320,526 - MPMX19_05608 0.23 +1.2
320,526 - MPMX19_05608 0.23 -0.9
320,526 - MPMX19_05608 0.23 +0.4
320,526 - MPMX19_05608 0.23 -0.8
320,526 - MPMX19_05608 0.23 -0.5
320,526 - MPMX19_05608 0.23 -2.5
320,526 - MPMX19_05608 0.23 -0.9
320,678 + MPMX19_05608 0.41 -1.7
320,678 + MPMX19_05608 0.41 +0.4
320,678 + MPMX19_05608 0.41 +0.9
320,678 + MPMX19_05608 0.41 -0.6
320,678 + MPMX19_05608 0.41 +2.0
320,679 - MPMX19_05608 0.41 -2.7
320,679 - MPMX19_05608 0.41 +0.2
320,679 - MPMX19_05608 0.41 +1.6
320,679 - MPMX19_05608 0.41 +0.7
320,679 - MPMX19_05608 0.41 +1.0
320,679 - MPMX19_05608 0.41 +1.8
320,679 - MPMX19_05608 0.41 -1.2
320,679 - MPMX19_05608 0.41 +0.8
320,798 + MPMX19_05608 0.55 +0.3
320,798 + MPMX19_05608 0.55 -0.2
320,798 + MPMX19_05608 0.55 -0.3
320,799 - MPMX19_05608 0.55 +0.4
320,799 - MPMX19_05608 0.55 -0.4
320,846 + MPMX19_05608 0.61 -0.6
320,846 + MPMX19_05608 0.61 +1.2
320,846 + MPMX19_05608 0.61 -1.0
320,846 + MPMX19_05608 0.61 -0.9
320,847 - MPMX19_05608 0.61 -1.8
320,847 - MPMX19_05608 0.61 +0.8
320,847 - MPMX19_05608 0.61 -1.0
320,847 - MPMX19_05608 0.61 +0.0
320,847 - MPMX19_05608 0.61 -2.3
320,847 - MPMX19_05608 0.61 +0.1
320,864 + MPMX19_05608 0.63 -0.8
320,921 + MPMX19_05608 0.69 +0.9
320,921 + MPMX19_05608 0.69 +0.1
320,921 + MPMX19_05608 0.69 -0.8
320,921 + MPMX19_05608 0.69 -1.7
320,921 + MPMX19_05608 0.69 -0.1
320,921 + MPMX19_05608 0.69 +0.7
320,921 + MPMX19_05608 0.69 +0.1
320,921 + MPMX19_05608 0.69 -0.7
320,921 + MPMX19_05608 0.69 -0.5
320,921 + MPMX19_05608 0.69 +0.0
320,921 + MPMX19_05608 0.69 -0.7
320,922 - MPMX19_05608 0.70 +0.0
320,922 - MPMX19_05608 0.70 +0.7
320,922 - MPMX19_05608 0.70 +0.7
320,922 - MPMX19_05608 0.70 +1.0
320,922 - MPMX19_05608 0.70 +0.7
320,922 - MPMX19_05608 0.70 -0.3
320,922 - MPMX19_05608 0.70 -0.1
320,922 - MPMX19_05608 0.70 -1.5
320,922 - MPMX19_05608 0.70 -0.6
320,922 - MPMX19_05608 0.70 +0.9
320,922 - MPMX19_05608 0.70 -0.2
320,922 - MPMX19_05608 0.70 -1.2
321,026 + MPMX19_05608 0.82 -2.5
321,026 + MPMX19_05608 0.82 +0.1
321,026 + MPMX19_05608 0.82 +0.3
321,027 - MPMX19_05608 0.82 +0.1
321,027 - MPMX19_05608 0.82 -1.0
321,268 + -1.5
321,268 + +0.2
321,282 + +0.1
321,282 + -0.6
321,282 + -0.5
321,283 - -0.1
321,283 - -0.5
321,306 - +0.3
321,306 - -0.7

Or see this region's nucleotide sequence